View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_low_123 (Length: 240)
Name: NF18993_low_123
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_123 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34232634 - 34232413
Alignment:
| Q |
1 |
ttcagactccgaaggtcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34232634 |
ttcagactccgaaggtcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgtagggatgataaattag |
34232535 |
T |
|
| Q |
101 |
caagatattgtggaatgataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34232534 |
caagatattgtggaatgataccggtcaatttgttgtgcgccaagttgagaaatcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccag |
34232435 |
T |
|
| Q |
201 |
taagttagaactaagatcaaga |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34232434 |
taagttagaactaagatcaaga |
34232413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 41713379 - 41713169
Alignment:
| Q |
11 |
gaaggtcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattg |
110 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||||| |||||||||| | ||||||||||||||||| |||| |||| ||||||||||||||||| |||| |
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|
| T |
41713379 |
gaagctcactgtcctttgaaaagttacttggcaaagtgccataaaatttgttcatttgtagatccaaaacttcaaggtatgataaattagcaagacattg |
41713280 |
T |
|
| Q |
111 |
tggaatgataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaa |
210 |
Q |
| |
|
||||||| |||| ||||||||||||| ||||||||||||| || ||||| ||||| ||||||| |||| | |||| ||||| ||||||||| || |
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|
| T |
41713279 |
tggaatggtaccagtcaatttgttgtttgccaagttgagaaatcccagtgaactcatattgcaaattgacacaaagatttcaccacgtagtaagttataa |
41713180 |
T |
|
| Q |
211 |
ctaagatcaag |
221 |
Q |
| |
|
|| |||||||| |
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|
| T |
41713179 |
cttagatcaag |
41713169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41571851 - 41571630
Alignment:
| Q |
1 |
ttcagactccgaaggtcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattag |
100 |
Q |
| |
|
|||||| | |||||||||| ||||||||| ||||||||||| |||| |||||||||| | |||||||||| |||||| ||||||||||||||||| || | |
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|
| T |
41571851 |
ttcagagtacgaaggtcacagtactttgaaaagttacttggtaaagtgccataaaatttgttcatttgtaaatccaaaacttgaagggatgataagtttg |
41571752 |
T |
|
| Q |
101 |
caagatattgtggaatgataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccag |
200 |
Q |
| |
|
||||| | ||||||||| | || |||||||||||||| ||||||||||| | | ||||||| | || ||||||| ||| ||||||| ||||| | | |
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|
| T |
41571751 |
caagacaatgtggaatggtgcctgtcaatttgttgtgtgccaagttgagcaattgaagtgaagttctattgcaaattgacgaagagatgtcaccggctaa |
41571652 |
T |
|
| Q |
201 |
taagttagaactaagatcaaga |
222 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
41571651 |
taagttaaaactaagatcaaga |
41571630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 42129154 - 42129364
Alignment:
| Q |
11 |
gaaggtcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattg |
110 |
Q |
| |
|
|||| |||| ||||| ||| |||||||||||||||| |||||||||||||||||||| | |||||| ||||||||| | ||| ||||||||||| |||| |
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|
| T |
42129154 |
gaagctcacagtactctgaaaagttacttggcaaagttccataaaatctattcatttgcaaatccaaaacttgaaggaacgatgaattagcaagacattg |
42129253 |
T |
|
| Q |
111 |
tggaatgataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaa |
210 |
Q |
| |
|
|||||||||| | ||||| | ||||| ||||||||||| | | ||||||| ||| | ||||||| ||| ||||| ||||| ||||||||||| || |
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|
| T |
42129254 |
tggaatgatatctgtcaaatgattgtgtgccaagttgagtaattgaagtgaactcaaattgcaaattgactcagagaggtcaccagccagtaagttaaaa |
42129353 |
T |
|
| Q |
211 |
ctaagatcaag |
221 |
Q |
| |
|
||||||||||| |
|
|
| T |
42129354 |
ctaagatcaag |
42129364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 34240360 - 34240157
Alignment:
| Q |
18 |
actgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatg |
117 |
Q |
| |
|
|||| ||||||| |||||| | ||||||| ||||||||| | ||||||||||||||||| | ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
34240360 |
actggactttgaaaagttattaggcaaagtgccataaaagttgttcatttgtagatccaaaatttgaagggatggtaaattagcaagacattgtggaatg |
34240261 |
T |
|
| Q |
118 |
ataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaagat |
217 |
Q |
| |
|
|||| || || |||||||| |||||||||||| | ||| || ||| | ||||||| |||| ||||| | ||| | ||||||||| ||||||||| |
|
|
| T |
34240260 |
ttacctgtgaaattgttgtgtcccaagttgagaaattcaagggaactcaaattgcaaattgacacagagaggttaccaacaagtaagttaaaactaagat |
34240161 |
T |
|
| Q |
218 |
caag |
221 |
Q |
| |
|
|||| |
|
|
| T |
34240160 |
caag |
34240157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 222
Target Start/End: Original strand, 42118052 - 42118243
Alignment:
| Q |
31 |
aagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccggtcaatt |
130 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| | |||||| ||||||||| |||| ||||||||||| ||||||||||||| | ||||||| |
|
|
| T |
42118052 |
aagttacttggcaaagttccataaaatctattcatttgcaaatccaaaacttgaaggattgatgaattagcaagacattgtggaatgatgtctgtcaatt |
42118151 |
T |
|
| Q |
131 |
tgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaagatcaaga |
222 |
Q |
| |
|
||||| ||||||||||| | | |||||| ||| | ||||||| ||| ||||| ||||| ||| ||||||| |||||||||||||| |
|
|
| T |
42118152 |
gattgtgtgccaagttgagtagtttaagtgaactcaaattgcaaattgactcagagaggtcaccaaccactaagttaaaactaagatcaaga |
42118243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 221
Target Start/End: Original strand, 42123782 - 42123979
Alignment:
| Q |
24 |
ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccg |
123 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| | ||||||||||||| ||| ||||||||||||| | | | ||||| | |||||||||||||||| |
|
|
| T |
42123782 |
ctttgaaaagttacttggcaaagtaccataaaacatgttcatttgtagattcaaaacttgaagggatggtgattcagcaaaacattgtggaatgatacca |
42123881 |
T |
|
| Q |
124 |
gtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaagatcaag |
221 |
Q |
| |
|
||||| | ||||| |||||||||||| | ||||||| ||||| |||||| | ||||| ||| ||||| | |||||| ||| |||||||||||| |
|
|
| T |
42123882 |
gtcaaatcgttgtaacccaagttgagaaattgaagtgaactcatattgcaaactgccaaagggatttcaccattcagtaaattatgactaagatcaag |
42123979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 221
Target Start/End: Original strand, 12248744 - 12248941
Alignment:
| Q |
24 |
ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccg |
123 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
12248744 |
ctttgagaagttacttggcaaagtgccatgaaatttgttcatttgtagattcaaaacttgaagggatgataaatcagcaagacattgtggaatgatacct |
12248843 |
T |
|
| Q |
124 |
gtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaagatcaag |
221 |
Q |
| |
|
||||||| ||||| ||| |||||| || ||||||| |||| ||||||| || | ||||| ||||| | ||||||||| ||||||||||||| |
|
|
| T |
12248844 |
gtcaattgattgtgttccaggttgagtgtttgaagtgaactcatgttgcaaattgatacagagaggtcaccagctagtaagttaaaactaagatcaag |
12248941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 11994185 - 11994136
Alignment:
| Q |
24 |
ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagat |
73 |
Q |
| |
|
||||||||||||||||||||||| ||||| | || | ||||||||||||| |
|
|
| T |
11994185 |
ctttgagaagttacttggcaaagtgccatgacatgtgttcatttgtagat |
11994136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 25522840 - 25522713
Alignment:
| Q |
24 |
ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccg |
123 |
Q |
| |
|
|||||| |||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||| | | | ||||||| |||||||||||||||| |
|
|
| T |
25522840 |
ctttgaaaagttacttggcaaagtgccatgaaatctattcatttgtagattcaaaacttgaagggatgttgattcagcaagacattgtggaatgatacca |
25522741 |
T |
|
| Q |
124 |
gtcaatttgttgtgcgccaagttgagaa |
151 |
Q |
| |
|
||||| ||||||| |||||||||||| |
|
|
| T |
25522740 |
gtcaaattgttgtatcccaagttgagaa |
25522713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 24141113 - 24141225
Alignment:
| Q |
24 |
ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccg |
123 |
Q |
| |
|
|||||| |||||||||||||||| ||||| |||| | || |||||||||| ||| ||| ||||||||| | ||| || |||| ||||||||||||||||| |
|
|
| T |
24141113 |
ctttgaaaagttacttggcaaagtgccatgaaatgtgttgatttgtagattcaaaactcgaagggatggtgaatcagaaagacattgtggaatgataccg |
24141212 |
T |
|
| Q |
124 |
gtcaatttgttgt |
136 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
24141213 |
gtcaaattgttgt |
24141225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 8523391 - 8523483
Alignment:
| Q |
25 |
tttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatg |
117 |
Q |
| |
|
||||| |||||||||||||||| |||| |||| | ||||||||||||||||| |||| |||| ||||||||||||||||| ||||||||||| |
|
|
| T |
8523391 |
tttgaaaagttacttggcaaagttccatgaaatttgttcatttgtagatccaaaacttcaaggtatgataaattagcaagacattgtggaatg |
8523483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 11118427 - 11118539
Alignment:
| Q |
24 |
ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccg |
123 |
Q |
| |
|
|||||| |||||||| ||||||| ||||| |||| | ||||||||||||| ||| || | |||| ||| | | | ||||||| |||||||||||| ||| |
|
|
| T |
11118427 |
ctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatggtgattcagcaagacattgtggaatgacacca |
11118526 |
T |
|
| Q |
124 |
gtcaatttgttgt |
136 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
11118527 |
gtcaaattgttgt |
11118539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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