View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_124 (Length: 239)
Name: NF18993_low_124
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_124 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 44424134 - 44423938
Alignment:
| Q |
18 |
aatgtgaaggttgatgc-taagtactacacatgaaattcaaattttagcatgctatgagttgaagttatctaactaaccattaaaatgaaataataacta |
116 |
Q |
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| T |
44424134 |
aatgtgaaggttgatgcctaagtactacacatgaa-ttcaaatcttagcatgctatgagttgaagttatctaactaaccattaaaatgaaataataacta |
44424036 |
T |
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| Q |
117 |
cttatttcatcaatcatctgtgtcaaatttgaatgccaaaaaatttaaacaacaaaaagttcaacaatcaagttcttctagtttttacctataagatttg |
216 |
Q |
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| T |
44424035 |
cttatttc----------tgtgtcaaatttgaatgccaaaaaatttaaacaacaaaaagttcaacaatcaagttcttctagtttttacctataagatttg |
44423946 |
T |
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