View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_low_125 (Length: 239)
Name: NF18993_low_125
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_125 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 33788265 - 33788464
Alignment:
| Q |
10 |
gtataattgcgtacactaattcatttaaaccagaccacagcaacaattgtttaagtcccttaaccatttgattaagaatttgatctttgatttgttcgca |
109 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||| || | ||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33788265 |
gtataattgcgtacattaattcatttgaaccagaccacagtaatatgtgtttaattcccttaaccatttgattaagaatttgatctttgattttttcgca |
33788364 |
T |
|
| Q |
110 |
tgaaaatatataatttaaaagagatcaacctcttaaatagattctaattattacctacataaatcttttatagtggtgtattgggataccttggtttacc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33788365 |
tgaaaatatataatttaaaagagatcaacctcttaaatagattataattattacctacataaatcttttatagtggtgtattgggataccttggtttacc |
33788464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University