View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_126 (Length: 239)
Name: NF18993_low_126
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_126 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 23073623 - 23073845
Alignment:
| Q |
17 |
atatagctataacagtaatgtacttatctctctttaaattattataagaaaatgatgtcatataaactaaaactcataagagctacggccagtagctaga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23073623 |
atatagctataacagtaatgtacttatctctctttaaattattataagaaaaggatgtcatataaactaaaactcataagacctacggccagtagctaga |
23073722 |
T |
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| Q |
117 |
catgtttctctagttctaattctccaattatagcaattgaaattcagaaaacaaaacaagttgtgtggacatctcaagtataaaagacaaggtactaaga |
216 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23073723 |
catgtttctctagttttaattctccaattatagcaattgaaattcagaaaacaaaacaagttgtgtgtacatctcaagtataaaagacaaggtactaaga |
23073822 |
T |
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| Q |
217 |
caaattgactatgtagacaaatc |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
23073823 |
caaattgactatgtagacaaatc |
23073845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 11808890 - 11808668
Alignment:
| Q |
17 |
atatagctataacagtaatgtacttatctctctttaaattattataagaaaatgatgtcatataaactaaaactcataagagctacggccagtagctaga |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11808890 |
atatagctataagagtaatgtacttatctctctttaaattattataagaaaaggatgtcatataaactaaaactcataagacctacggccagtagctaga |
11808791 |
T |
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| Q |
117 |
catgtttctctagttctaattctccaattatagcaattgaaattcagaaaacaaaacaagttgtgtggacatctcaagtataaaagacaaggtactaaga |
216 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11808790 |
catgtttctctagttttaattctccaattatagcaattgaaattcagaaaacaaaacaagttgtgtgtacatctcaagtataaaagacaaggtactaaga |
11808691 |
T |
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| Q |
217 |
caaattgactatgtagacaaatc |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
11808690 |
caaattgactatgtagacaaatc |
11808668 |
T |
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