View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_127 (Length: 238)

Name: NF18993_low_127
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_127
NF18993_low_127
[»] chr3 (13 HSPs)
chr3 (95-220)||(2469308-2469433)
chr3 (1-94)||(6806584-6806677)
chr3 (7-94)||(13719155-13719242)
chr3 (3-94)||(13723052-13723143)
chr3 (3-94)||(4100057-4100151)
chr3 (3-94)||(5378014-5378106)
chr3 (3-94)||(5383350-5383442)
chr3 (6-94)||(4099738-4099826)
chr3 (1-95)||(2185406-2185501)
chr3 (1-97)||(23619390-23619486)
chr3 (97-152)||(17756022-17756077)
chr3 (97-152)||(19057342-19057397)
chr3 (112-152)||(9856295-9856335)
[»] chr4 (6 HSPs)
chr4 (1-97)||(14027015-14027111)
chr4 (3-94)||(6746689-6746782)
chr4 (47-94)||(8724775-8724822)
chr4 (42-77)||(5504422-5504457)
chr4 (47-96)||(37537888-37537937)
chr4 (95-151)||(28813712-28813768)
[»] scaffold0015 (2 HSPs)
scaffold0015 (1-95)||(24210-24304)
scaffold0015 (1-94)||(29527-29620)
[»] chr8 (6 HSPs)
chr8 (1-94)||(86469-86562)
chr8 (1-94)||(29010782-29010875)
chr8 (1-94)||(91786-91879)
chr8 (1-94)||(19802940-19803033)
chr8 (21-88)||(26491752-26491817)
chr8 (97-152)||(38294742-38294797)
[»] chr6 (6 HSPs)
chr6 (1-94)||(16777802-16777895)
chr6 (1-95)||(16772465-16772559)
chr6 (1-94)||(32708211-32708304)
chr6 (1-94)||(32703834-32703927)
chr6 (25-95)||(26243683-26243754)
chr6 (97-139)||(23622804-23622846)
[»] chr5 (7 HSPs)
chr5 (1-94)||(12842933-12843026)
chr5 (1-97)||(37022663-37022759)
chr5 (3-91)||(24092098-24092186)
chr5 (36-94)||(656804-656862)
chr5 (97-151)||(7779736-7779790)
chr5 (95-152)||(14854536-14854593)
chr5 (95-132)||(16305910-16305947)
[»] chr1 (18 HSPs)
chr1 (1-94)||(2790575-2790668)
chr1 (1-94)||(2797005-2797098)
chr1 (3-94)||(14471544-14471635)
chr1 (3-94)||(14476907-14476998)
chr1 (3-94)||(23200353-23200444)
chr1 (3-94)||(23202722-23202813)
chr1 (3-94)||(39170145-39170236)
chr1 (1-91)||(42375326-42375416)
chr1 (1-94)||(21010396-21010490)
chr1 (25-92)||(14632655-14632722)
chr1 (25-94)||(394763-394832)
chr1 (59-94)||(42377395-42377430)
chr1 (97-152)||(46533198-46533253)
chr1 (25-95)||(49625747-49625818)
chr1 (97-150)||(23482410-23482463)
chr1 (95-151)||(51271962-51272018)
chr1 (97-151)||(3226707-3226761)
chr1 (42-78)||(34427170-34427206)
[»] chr7 (7 HSPs)
chr7 (1-93)||(11711344-11711436)
chr7 (1-94)||(11716589-11716682)
chr7 (1-94)||(13160540-13160635)
chr7 (1-94)||(13166996-13167091)
chr7 (97-152)||(41279126-41279181)
chr7 (97-151)||(16376242-16376296)
chr7 (25-96)||(37063216-37063286)
[»] chr2 (6 HSPs)
chr2 (6-94)||(20925392-20925480)
chr2 (97-151)||(41326965-41327019)
chr2 (95-151)||(10129012-10129068)
chr2 (97-152)||(15256326-15256381)
chr2 (105-152)||(27351804-27351851)
chr2 (64-94)||(36313780-36313810)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 2469308 - 2469433
Alignment:
Q  95 cttaatttccatgcaagctcgattaccctaatttccatagaaactcggctatatatagaaaatcaacgtttgatttttattttagagtatccaatattgg 194  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  2469308 cttaatttccatgcaaactcgattaccctaatttccatagaaactcgggtatatatagaaaatcaacgttgaatttttattttagagtatccaatattgg 2469407  T
Q  195 cagttttatcatgtgtcagttgcgca 220  Q
    ||||||||||||||||||||||||||    
T  2469408 cagttttatcatgtgtcagttgcgca 2469433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 6806677 - 6806584
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6806677 acttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 6806584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 13719242 - 13719155
Alignment:
Q  7 ttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13719242 ttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 13719155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 13723143 - 13723052
Alignment:
Q  3 ttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13723143 ttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgatagttagagagtggattctctcttggtttctgagcca 13723052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 4100057 - 4100151
Alignment:
Q  3 ttccttcatgtattagcacaatttgaaatatataaaa---cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4100057 ttccttcatgtattatcacaatttgaaatatataaaaaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 4100151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 5378106 - 5378014
Alignment:
Q  3 ttccttcatgtattagcacaattt-gaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5378106 ttccttcatgtatcatcacaattttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 5378014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 5383442 - 5383350
Alignment:
Q  3 ttccttcatgtattagcacaattt-gaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5383442 ttccttcatgtatcatcacaattttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 5383350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 4099826 - 4099738
Alignment:
Q  6 cttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  4099826 cttcatgtatcctcacaatttgaaatatataaaacttgagtttctcttttgagagttagagagtggattctctcttggtttatgagcca 4099738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 2185406 - 2185501
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatat-aaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccac 95  Q
    ||||||||||||||| | ||  | ||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||    
T  2185406 acttccttcatgtatcatcatcaattgaaatatatgaaaacttgagtttctcatttgaaagttagagaatggattctctcttgatttctgagccac 2185501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 23619390 - 23619486
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccactt 97  Q
    ||||||||||||||| | ||  | | |||| |||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  23619390 acttccttcatgtatcatcatcaatggaaacatataaaactcgagtttctcatttgagagtaatagagtggattctctcttggtttctgagctactt 23619486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 17756022 - 17756077
Alignment:
Q  97 taatttccatgcaagctcgattaccctaatttccatagaaactcggctatatatag 152  Q
    |||||||||||||| ||||  |||||||||||||||  |||||| |||||||||||    
T  17756022 taatttccatgcaaactcggctaccctaatttccatgcaaactcagctatatatag 17756077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 19057342 - 19057397
Alignment:
Q  97 taatttccatgcaagctcgattaccctaatttccatagaaactcggctatatatag 152  Q
    |||||||||||||| ||||  |||||||||||||||  |||||| |||||||||||    
T  19057342 taatttccatgcaaactcggctaccctaatttccatgcaaactcagctatatatag 19057397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 9856335 - 9856295
Alignment:
Q  112 ctcgattaccctaatttccatagaaactcggctatatatag 152  Q
    ||||| |||||||||||||||  ||||||||||||||||||    
T  9856335 ctcgactaccctaatttccatgcaaactcggctatatatag 9856295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 14027015 - 14027111
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccactt 97  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14027015 acttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccactt 14027111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 6746782 - 6746689
Alignment:
Q  3 ttccttcatgtattagcacaatttgaaatatataaaa--cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||| | |||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6746782 ttccttcatgtataatcacaatttgaaatatataaaaaacttgcgtttctcatttgagagttagagagtggattctctcttggtttctgagcca 6746689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 8724775 - 8724822
Alignment:
Q  47 ttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||    
T  8724775 ttctcatttgagagttagatagtggattctctcttggcttttgagcca 8724822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 5504457 - 5504422
Alignment:
Q  42 tgagtttctcatttgagagttagagagtggattctc 77  Q
    ||||||||||||| ||||||||||||||||||||||    
T  5504457 tgagtttctcattcgagagttagagagtggattctc 5504422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 37537937 - 37537888
Alignment:
Q  47 ttctcatttgagagttagagagtggattctctcttggtttctgagccact 96  Q
    |||||| ||||||||| |||||| |||||||| |||| ||||||||||||    
T  37537937 ttctcaattgagagttcgagagttgattctcttttggcttctgagccact 37537888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 28813712 - 28813768
Alignment:
Q  95 cttaatttccatgcaagctcgattaccctaatttccatagaaactcggctatatata 151  Q
    |||||||||||||||| ||||  |||||||||||||||  ||||| || ||||||||    
T  28813712 cttaatttccatgcaaactcggctaccctaatttccatgtaaacttggttatatata 28813768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 24304 - 24210
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccac 95  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24304 acttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccac 24210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 29620 - 29527
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29620 acttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 29527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 86469 - 86562
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  86469 acttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 86562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 29010875 - 29010782
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29010875 acttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttgatttctgagcca 29010782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 91786 - 91879
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  91786 actttcttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttatgagcca 91879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 19802940 - 19803033
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19802940 acttccttcatgtattacaacaatttgaaatatataaaacttgagtttctaatttgagagttagagagtggattctctcttggtttctgagcca 19803033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 26491817 - 26491752
Alignment:
Q  21 caatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttct 88  Q
    ||||||||||||||||||| ||||||||||||||||| ||||  |||||||||||||||||| |||||    
T  26491817 caatttgaaatatataaaatttgagtttctcatttgaaagtt--agagtggattctctcttgatttct 26491752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 38294797 - 38294742
Alignment:
Q  97 taatttccatgcaagctcgattaccctaatttccatagaaactcggctatatatag 152  Q
    ||||||| |||||| ||||  |||||||||||||||| ||||||| ||||||||||    
T  38294797 taatttctatgcaaactcggctaccctaatttccatacaaactcgactatatatag 38294742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 16777895 - 16777802
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16777895 acttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 16777802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 16772559 - 16772465
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccac 95  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16772559 acttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctattggtttctgagccac 16772465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 32708211 - 32708304
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32708211 acttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttagtttctgagcca 32708304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 32703834 - 32703927
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32703834 acttccttcatgtattaccacaatttgaaatgtataaaacttgagtttctcatttgagagttatagagtggattctctcttggtttctgagcca 32703927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 26243683 - 26243754
Alignment:
Q  25 ttgaaatatataaaact-tgagtttctcatttgagagttagagagtggattctctcttggtttctgagccac 95  Q
    ||||||||||||||| | |||||||||||||| ||||||||| | ||   |||||||| |||||||||||||    
T  26243683 ttgaaatatataaaattgtgagtttctcatttaagagttagaaaatgaggtctctcttagtttctgagccac 26243754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 23622804 - 23622846
Alignment:
Q  97 taatttccatgcaagctcgattaccctaatttccatagaaact 139  Q
    |||||||||||||| ||||| |||||||||||||||| |||||    
T  23622804 taatttccatgcaaactcgactaccctaatttccatataaact 23622846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 12842933 - 12843026
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12842933 acttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 12843026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 37022759 - 37022663
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccactt 97  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37022759 acttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttcttagccactt 37022663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 24092186 - 24092098
Alignment:
Q  3 ttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgag 91  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24092186 ttccttcatgtattctcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttagtttctgag 24092098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 656862 - 656804
Alignment:
Q  36 aaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656862 aaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 656804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 7779736 - 7779790
Alignment:
Q  97 taatttccatgcaagctcgattaccctaatttccatagaaactcggctatatata 151  Q
    |||||||||||||| ||||| ||||||||||| |||  |||||||| ||||||||    
T  7779736 taatttccatgcaaactcgactaccctaattttcatgcaaactcggatatatata 7779790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 14854536 - 14854593
Alignment:
Q  95 cttaatttccatgcaagctcgattaccctaatttccatagaaactcggctatatatag 152  Q
    |||||||||||||||| ||||  ||||||||||| |||  ||||||| ||||||||||    
T  14854536 cttaatttccatgcaaactcggctaccctaattttcatgcaaactcgactatatatag 14854593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 16305910 - 16305947
Alignment:
Q  95 cttaatttccatgcaagctcgattaccctaatttccat 132  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  16305910 cttaatttccatgcaaactcggttaccctaatttccat 16305947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 2790668 - 2790575
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2790668 acttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 2790575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 2797098 - 2797005
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2797098 acttccttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 2797005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 14471635 - 14471544
Alignment:
Q  3 ttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14471635 ttccttcatgtatcatcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 14471544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 14476998 - 14476907
Alignment:
Q  3 ttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14476998 ttccttcatgtatcatcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 14476907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 23200353 - 23200444
Alignment:
Q  3 ttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23200353 ttccttcatgtatcatcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 23200444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 23202722 - 23202813
Alignment:
Q  3 ttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23202722 ttccttcatgtatcatcacaatttgaaatatattaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 23202813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 39170145 - 39170236
Alignment:
Q  3 ttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    |||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39170145 ttccttcatgcatcatcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 39170236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 42375326 - 42375416
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgag 91  Q
    ||||| ||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42375326 acttctttcatgtattaccacaatttaaaatatacaaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgag 42375416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 21010490 - 21010396
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaa-cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||| | ||  | ||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  21010490 acttccttcatgtatcaacatcaattgaaatatataaaaacttgagtttctcatttcagagttagagagtggatactctcttggtttctgagcca 21010396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 14632722 - 14632655
Alignment:
Q  25 ttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagc 92  Q
    ||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||| |||| |||||    
T  14632722 ttgaaatatttaaaatttgagtttctcatttgaaagttaaagagtggattctctcttcgtttatgagc 14632655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 394832 - 394763
Alignment:
Q  25 ttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||| ||||||||| ||||||||||||||||| | ||| |||||| ||||||||||| |||||||||||    
T  394832 ttgaattatataaaatttgagtttctcatttgaaaattacagagtgaattctctcttgatttctgagcca 394763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 42377395 - 42377430
Alignment:
Q  59 agttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||||||||||||||||||||||||    
T  42377395 agttagagagtggattctctcttggtttctgagcca 42377430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 46533198 - 46533253
Alignment:
Q  97 taatttccatgcaagctcgattaccctaatttccatagaaactcggctatatatag 152  Q
    |||||| ||||||| ||||| |||||||||||||||  ||||||||||||||||||    
T  46533198 taattttcatgcaaactcgactaccctaatttccatgcaaactcggctatatatag 46533253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 49625747 - 49625818
Alignment:
Q  25 ttgaaatatataaaact-tgagtttctcatttgagagttagagagtggattctctcttggtttctgagccac 95  Q
    ||||||||||||||| | ||||||||||||| |||||||||||| |||| |||||||||  ||| |||||||    
T  49625747 ttgaaatatataaaattgtgagtttctcattagagagttagagaatggactctctcttgacttcagagccac 49625818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 23482463 - 23482410
Alignment:
Q  97 taatttccatgcaagctcgattaccctaatttccatagaaactcggctatatat 150  Q
    ||||||||||||||  |||| |||||||||||||||| |||||| |||||||||    
T  23482463 taatttccatgcaaattcgactaccctaatttccatacaaactcagctatatat 23482410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 51272018 - 51271962
Alignment:
Q  95 cttaatttccatgcaagctcgattaccctaatttccatagaaactcggctatatata 151  Q
    |||||||||||||||| ||||| |||||||||||||||  ||||| || ||||||||    
T  51272018 cttaatttccatgcaaactcgactaccctaatttccatgtaaacttggttatatata 51271962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 3226761 - 3226707
Alignment:
Q  97 taatttccatgcaagctcgattaccctaatttccatagaaactcggctatatata 151  Q
    |||||||||||||| ||||| |||||||||||||||  ||||| || ||||||||    
T  3226761 taatttccatgcaaactcgactaccctaatttccatgtaaacttggttatatata 3226707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 34427170 - 34427206
Alignment:
Q  42 tgagtttctcatttgagagttagagagtggattctct 78  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  34427170 tgagattctcgtttgagagttagagagtggattctct 34427206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 11711344 - 11711436
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcc 93  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11711344 acttccttcatgtatcaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcc 11711436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 11716589 - 11716682
Alignment:
Q  1 acttccttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11716589 acttccttcatgtatcaccataatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 11716682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 13160540 - 13160635
Alignment:
Q  1 acttccttcatgtattagcac-aatttgaaatatataaaa-cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  13160540 acttccttcatgtattatcaccaatttgaaatatataaaaacttgagtttctcatatgagagttagagagtggattctctcttcgtttctgagcca 13160635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 13166996 - 13167091
Alignment:
Q  1 acttccttcatgtattagcac-aatttgaaatatataaaa-cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  13166996 acttccttcatgtattatcaccaatttgaaatatataaaaacttgagtttctcatttgagagttagagagtgaattctctcttgatttctgagcca 13167091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 41279126 - 41279181
Alignment:
Q  97 taatttccatgcaagctcgattaccctaatttccatagaaactcggctatatatag 152  Q
    |||||||||||||| ||||  |||||||||||||||  ||||||||||||||||||    
T  41279126 taatttccatgcaaactcggctaccctaatttccatgcaaactcggctatatatag 41279181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 16376296 - 16376242
Alignment:
Q  97 taatttccatgcaagctcgattaccctaatttccatagaaactcggctatatata 151  Q
    |||||||||||||| ||||   ||||||||||||||  |||||||||||||||||    
T  16376296 taatttccatgcaaactcggccaccctaatttccatgcaaactcggctatatata 16376242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 37063216 - 37063286
Alignment:
Q  25 ttgaaatatataaaa-cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccact 96  Q
    ||||||||||||||| |||||||||| || | || | ||||||||||||  |||||||| |||||||||||||    
T  37063216 ttgaaatatataaaaacttgagtttcacactcgaaaattagagagtgga--ctctcttgatttctgagccact 37063286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 20925480 - 20925392
Alignment:
Q  6 cttcatgtattagcacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 94  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20925480 cttcatgtattaccacaatttgaaatatataaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 20925392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 41326965 - 41327019
Alignment:
Q  97 taatttccatgcaagctcgattaccctaatttccatagaaactcggctatatata 151  Q
    |||||||||||||| ||||  |||||||||||||||  |||||||||||||||||    
T  41326965 taatttccatgcaaactcggctaccctaatttccatgcaaactcggctatatata 41327019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 10129068 - 10129012
Alignment:
Q  95 cttaatttccatgcaagctcgattaccctaatttccatagaaactcggctatatata 151  Q
    |||||||||||||||| ||||| |||||||||||||||  ||||| || ||||||||    
T  10129068 cttaatttccatgcaaactcgactaccctaatttccatgtaaacttggttatatata 10129012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 15256381 - 15256326
Alignment:
Q  97 taatttccatgcaagctcgattaccctaatttccatagaaactcggctatatatag 152  Q
    |||||||||||||| ||||  |||||||||||||||  ||||| ||||||||||||    
T  15256381 taatttccatgcaaactcggctaccctaatttccatgcaaacttggctatatatag 15256326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 27351851 - 27351804
Alignment:
Q  105 atgcaagctcgattaccctaatttccatagaaactcggctatatatag 152  Q
    |||||| ||||| |||||||||||||||  ||||||||||||||||||    
T  27351851 atgcaaactcgactaccctaatttccatgcaaactcggctatatatag 27351804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 94
Target Start/End: Complemental strand, 36313810 - 36313780
Alignment:
Q  64 gagagtggattctctcttggtttctgagcca 94  Q
    |||||||||||||||||||||||||||||||    
T  36313810 gagagtggattctctcttggtttctgagcca 36313780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University