View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_13 (Length: 537)
Name: NF18993_low_13
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 16 - 525
Target Start/End: Original strand, 35887381 - 35887890
Alignment:
| Q |
16 |
acaaaagtaatataagagctgacttgggatttcatgtgtaacacacaattgtgtgcaatcccttaaactaatatatatggtaaattgcaacatagatttc |
115 |
Q |
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| T |
35887381 |
acaaaagtaatttaagagctgactttggatttcatgtgtaacacacaattgtgtgcaatcccttaaactaatatatatggtaaattgcaacatagatttc |
35887480 |
T |
|
| Q |
116 |
atgcatacctgttcacccaaaaactcactttccacaaagtctgccaaattcacatcaccagtctttgaggcaacctgtggaaaaacatacataaagttaa |
215 |
Q |
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| T |
35887481 |
atgcatacctgttcacccaaaaactcactttccacaaagtctgccaaattcacatcaccagtctttgaggcaacctgtggaaaaacatacataaagttaa |
35887580 |
T |
|
| Q |
216 |
gagaaaggaatttccattttatcgatttaaatgccaaaatgaactagacaatgatacaaagcacaatctgtaaaccagaaaccaaaactcaacaaacatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35887581 |
gagaaaggaatttccattttatcgatttaaatgccaaaatgaactagacaatgatacaaagcacaatctgtaaaccagaaaccaaaactcaacaaacatg |
35887680 |
T |
|
| Q |
316 |
tcttacattgtgcaggttaaggagtttctcatttgttagcttctccaaggacaatgcaagttccattgctgcaataagataagaatgttaaattctgata |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35887681 |
tcttacattgtgcaggttaaggagtttctcatttgttagcttctccaaggacaatgcaagttccattgctgcaataagataagaatgttaaattctgata |
35887780 |
T |
|
| Q |
416 |
tatagaaaatccaatcacccaagcaggtaacaattgtaaaatgttgacttctccatcttgtgttactcattgcattacacaataagacttcattttttaa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35887781 |
tatagaaaatccaatcacccaagcaggtaacaattgtaaaatgttgacttctccatcttgtgttactcattgcattacacaataagacttcattttttaa |
35887880 |
T |
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| Q |
516 |
gcaaatattg |
525 |
Q |
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|||||||||| |
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| T |
35887881 |
gcaaatattg |
35887890 |
T |
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