View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_low_130 (Length: 237)
Name: NF18993_low_130
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_130 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 32916853 - 32916681
Alignment:
| Q |
21 |
cacattagcatctctcccttaaatgtgagactctctccatcagtgatatatagacatagctaagatcagatggatgcacaactcgctnnnnnnngatagg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32916853 |
cacattagcatctctcccttaaatgtgagactctctgcatcagtgatatatagacatagctaagatcagatggatgcacaactcgctaaaaaaagatagg |
32916754 |
T |
|
| Q |
121 |
atggtaatgatttcatgtaacggggttttcgttcctcccttcatgaaaagagagaaaggtaattaaataaagg |
193 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32916753 |
atggtaatgatttcatgtaatggggtttttgttcctcccttcatgaaaagagagaaaggtaattaaataaagg |
32916681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 6560996 - 6560964
Alignment:
| Q |
22 |
acattagcatctctcccttaaatgtgagactct |
54 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
6560996 |
acattagcatctctcccttaactgtgagactct |
6560964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University