View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_131 (Length: 236)

Name: NF18993_low_131
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_131
NF18993_low_131
[»] chr8 (7 HSPs)
chr8 (6-236)||(14338713-14338943)
chr8 (21-236)||(3598921-3599136)
chr8 (71-234)||(14338851-14339015)
chr8 (70-179)||(14338923-14339034)
chr8 (71-234)||(3599044-3599216)
chr8 (94-179)||(3599148-3599235)
chr8 (184-234)||(3213529-3213580)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 236
Target Start/End: Original strand, 14338713 - 14338943
Alignment:
Q  6 aggagcacagagagtagtattagactattaatgcactttaatgattgctcgagttaatttaagaattaccatccatccacatgttataccatagcctaaa 105  Q
    |||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14338713 aggaccacaaagagtagtattagactattagtgcactttaatgattgctcgagttaatttaagaattaccatccatcaacatgttataccatagcctaaa 14338812  T
Q  106 gtgtgaatttgacaatgtcactaaaattcttcaaaaatttaccatccatccacatgctaaccatagcctaaagtgtaaatttggcaatataataaaattc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14338813 gtgtgaatttgacaatgtcactaaaattcttcaaaaatttaccatccatccacatgctaaccatggcctaaagtgtaaatttggcaatataataaaattc 14338912  T
Q  206 ttccaaaaatattaccatccatcaacatgat 236  Q
    |||||||||||||||||||||||||||||||    
T  14338913 ttccaaaaatattaccatccatcaacatgat 14338943  T

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Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 3598921 - 3599136
Alignment:
Q  21 agtattagactattaatgcactttaatgattgctcgagttaatttaagaattaccatccatccacatgttataccatagcctaaagtgtgaatttgacaa 120  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||    
T  3598921 agtattagactattagtgcactttaatgattgctcgagttaatttaagaattatcatccatccacatgttataccagtgcctaaagtgtgaatttgacaa 3599020  T
Q  121 tgtcactaaaattcttcaaaaatttaccatccatccacatgctaaccatagcctaaagtgtaaatttggcaatataataaaattcttccaaaaatattac 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3599021 tgtcactaaaattcttcaaaaatttaccatccatccacatgctaaccatagcctaaagtgtaaatttggcaatataataaaattcttccaaaaatattac 3599120  T
Q  221 catccatcaacatgat 236  Q
    ||||||||||||||||    
T  3599121 catccatcaacatgat 3599136  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 14338851 - 14339015
Alignment:
Q  71 ttaccatccatccacatgttataccatagcctaaagtgtgaatttgacaatgtcactaaaattcttc-aaaaat-ttaccatccatccacatgcta-acc 167  Q
    |||||||||||||||||| || ||||| ||||||||||| |||||| |||| | | ||||||||||| |||||| |||||||||||| ||||| || |||    
T  14338851 ttaccatccatccacatgcta-accatggcctaaagtgtaaatttggcaatataa-taaaattcttccaaaaatattaccatccatcaacatgatatacc 14338948  T
Q  168 atagcctaaagtgtaaatttggcaatataataaaattcttccaaaaatattaccatccatcaacatg 234  Q
    |||||| ||||||| ||||||||||||| |  ||||||||| ||||||||||| ||||||| |||||    
T  14338949 atagcccaaagtgtgaatttggcaatatcaataaattcttctaaaaatattacaatccatccacatg 14339015  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 14338923 - 14339034
Alignment:
Q  70 attaccatccatccacatgttataccatagcctaaagtgtgaatttgacaatgtcactaaaattcttc-aaaaat-ttaccatccatccacatgcta-ac 166  Q
    ||||||||||||| ||||| |||||||||||| |||||||||||||| |||| ||| | ||||||||| |||||| |||| |||||||||||||||| ||    
T  14338923 attaccatccatcaacatgatataccatagcccaaagtgtgaatttggcaatatcaat-aaattcttctaaaaatattacaatccatccacatgctatac 14339021  T
Q  167 catagcctaaagt 179  Q
    |||||||||||||    
T  14339022 catagcctaaagt 14339034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 3599044 - 3599216
Alignment:
Q  71 ttaccatccatccacatgttataccatagcctaaagtgtgaatttgacaatgtcactaaaattcttc-aaaaat-ttaccatccatccacatgctaa--- 165  Q
    |||||||||||||||||| || ||||||||||||||||| |||||| |||| | | ||||||||||| |||||| |||||||||||| ||||| ||        
T  3599044 ttaccatccatccacatgcta-accatagcctaaagtgtaaatttggcaatataa-taaaattcttccaaaaatattaccatccatcaacatgatatacc 3599141  T
Q  166 ------ccatagcctaaagtgtaaatttggcaatataataaaattcttccaaaaatattaccatccatcaacatg 234  Q
          |||||||| ||||||| || |||||||||| |  |||||||| |||||||||||| ||||||| |||||    
T  3599142 ataggtccatagcccaaagtgtgaacttggcaatatcactaaattctttcaaaaatattacaatccatccacatg 3599216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 3599148 - 3599235
Alignment:
Q  94 ccatagcctaaagtgtgaatttgacaatgtcactaaaattcttcaaaaat-ttaccatccatccacatgcta-accatagcctaaagt 179  Q
    |||||||| |||||||||| ||| |||| |||||||| |  ||||||||| |||| ||||||||||||||||  ||||||||||||||    
T  3599148 ccatagcccaaagtgtgaacttggcaatatcactaaattctttcaaaaatattacaatccatccacatgctatgccatagcctaaagt 3599235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 3213580 - 3213529
Alignment:
Q  184 atttggcaatataa-taaaattcttccaaaaatattaccatccatcaacatg 234  Q
    |||||||||||| | |||||||||||||||||||| |||||||||| |||||    
T  3213580 atttggcaatatcactaaaattcttccaaaaatatcaccatccatccacatg 3213529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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