View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_137 (Length: 234)

Name: NF18993_low_137
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_137
NF18993_low_137
[»] chr1 (14 HSPs)
chr1 (3-220)||(11808192-11808409)
chr1 (3-130)||(23074104-23074231)
chr1 (124-222)||(38887086-38887197)
chr1 (124-222)||(14792562-14792673)
chr1 (124-222)||(18121545-18121656)
chr1 (124-222)||(44892391-44892502)
chr1 (177-221)||(41225454-41225498)
chr1 (177-221)||(41226707-41226751)
chr1 (177-218)||(21243761-21243802)
chr1 (184-222)||(45755535-45755573)
chr1 (175-224)||(21188031-21188080)
chr1 (144-177)||(40390112-40390145)
chr1 (124-177)||(41225511-41225564)
chr1 (124-177)||(41226764-41226817)
[»] chr8 (12 HSPs)
chr8 (124-224)||(22474698-22474811)
chr8 (124-221)||(29762868-29762978)
chr8 (124-222)||(41680132-41680243)
chr8 (124-178)||(17978472-17978526)
chr8 (124-177)||(22208210-22208263)
chr8 (124-221)||(21579206-21579316)
chr8 (124-224)||(36405129-36405242)
chr8 (176-224)||(20517033-20517081)
chr8 (124-221)||(12037164-12037274)
chr8 (182-224)||(20879485-20879527)
chr8 (124-177)||(22258364-22258417)
chr8 (144-177)||(22966772-22966805)
[»] chr4 (14 HSPs)
chr4 (124-224)||(19565915-19566028)
chr4 (124-224)||(12623258-12623371)
chr4 (124-224)||(33243291-33243404)
chr4 (124-224)||(44023600-44023713)
chr4 (124-224)||(40230248-40230361)
chr4 (124-177)||(33186844-33186897)
chr4 (124-177)||(46741141-46741194)
chr4 (128-177)||(12424350-12424399)
chr4 (176-224)||(14477638-14477686)
chr4 (182-224)||(13165145-13165187)
chr4 (144-178)||(20150787-20150821)
chr4 (176-222)||(26921508-26921554)
chr4 (177-222)||(46741207-46741252)
chr4 (176-224)||(18463030-18463078)
[»] scaffold0630 (1 HSPs)
scaffold0630 (124-224)||(9005-9118)
[»] scaffold0063 (1 HSPs)
scaffold0063 (124-224)||(62660-62773)
[»] scaffold0048 (1 HSPs)
scaffold0048 (124-222)||(56918-57026)
[»] chr3 (9 HSPs)
chr3 (124-224)||(53646056-53646169)
chr3 (124-177)||(54330364-54330417)
chr3 (124-177)||(14152457-14152510)
chr3 (176-224)||(3160624-3160672)
chr3 (182-224)||(21845649-21845691)
chr3 (124-177)||(5215588-5215641)
chr3 (176-224)||(50350813-50350861)
chr3 (186-224)||(48631348-48631386)
chr3 (145-177)||(15566706-15566738)
[»] chr2 (8 HSPs)
chr2 (124-220)||(23968624-23968733)
chr2 (176-224)||(19647240-19647288)
chr2 (176-224)||(28652549-28652597)
chr2 (177-221)||(14179728-14179772)
chr2 (177-221)||(14183466-14183510)
chr2 (124-178)||(14183522-14183576)
chr2 (124-177)||(24717961-24718014)
chr2 (177-217)||(24718027-24718067)
[»] scaffold0121 (1 HSPs)
scaffold0121 (125-177)||(20142-20194)
[»] scaffold0439 (1 HSPs)
scaffold0439 (124-222)||(4363-4474)
[»] scaffold0385 (1 HSPs)
scaffold0385 (124-222)||(287-398)
[»] scaffold0371 (2 HSPs)
scaffold0371 (124-222)||(10445-10556)
scaffold0371 (177-222)||(3882-3927)
[»] scaffold0020 (1 HSPs)
scaffold0020 (124-222)||(174163-174274)
[»] chr6 (11 HSPs)
chr6 (124-222)||(7217243-7217353)
chr6 (124-224)||(23431444-23431557)
chr6 (124-224)||(25921943-25922056)
chr6 (124-222)||(18455072-18455183)
chr6 (124-222)||(31734649-31734760)
chr6 (124-177)||(22557190-22557243)
chr6 (124-177)||(23658030-23658083)
chr6 (124-224)||(32259787-32259900)
chr6 (182-224)||(1818965-1819007)
chr6 (176-224)||(25601327-25601375)
chr6 (188-224)||(31166259-31166295)
[»] chr5 (9 HSPs)
chr5 (124-222)||(26762344-26762455)
chr5 (124-221)||(8503888-8503998)
chr5 (124-224)||(14025804-14025917)
chr5 (134-222)||(1626917-1627018)
chr5 (124-177)||(8833263-8833316)
chr5 (133-222)||(26749982-26750084)
chr5 (182-224)||(21504152-21504194)
chr5 (177-218)||(8833209-8833250)
chr5 (144-177)||(24068191-24068224)
[»] chr7 (9 HSPs)
chr7 (124-221)||(14160856-14160966)
chr7 (124-224)||(14318014-14318127)
chr7 (124-177)||(43276801-43276854)
chr7 (124-222)||(15119306-15119417)
chr7 (124-177)||(9743136-9743189)
chr7 (124-177)||(8513811-8513864)
chr7 (176-224)||(42565830-42565878)
chr7 (177-206)||(9743094-9743123)
chr7 (188-224)||(33060457-33060493)
[»] scaffold0401 (1 HSPs)
scaffold0401 (124-222)||(8763-8874)
[»] scaffold0039 (2 HSPs)
scaffold0039 (176-222)||(9927-9973)
scaffold0039 (124-172)||(9990-10038)
[»] scaffold1160 (1 HSPs)
scaffold1160 (124-177)||(626-679)
[»] scaffold0011 (1 HSPs)
scaffold0011 (124-224)||(33396-33509)
[»] scaffold0261 (1 HSPs)
scaffold0261 (176-222)||(6419-6465)
[»] scaffold0431 (1 HSPs)
scaffold0431 (128-177)||(5576-5625)
[»] scaffold0337 (1 HSPs)
scaffold0337 (176-224)||(3211-3259)
[»] scaffold0217 (1 HSPs)
scaffold0217 (176-224)||(28720-28768)
[»] scaffold0092 (1 HSPs)
scaffold0092 (176-224)||(38439-38487)
[»] scaffold0165 (1 HSPs)
scaffold0165 (182-224)||(31942-31984)
[»] scaffold1939 (1 HSPs)
scaffold1939 (182-223)||(140-181)
[»] scaffold0145 (1 HSPs)
scaffold0145 (144-177)||(8086-8119)
[»] scaffold0125 (1 HSPs)
scaffold0125 (191-224)||(7223-7256)
[»] scaffold0120 (1 HSPs)
scaffold0120 (144-177)||(29273-29306)
[»] scaffold1800 (1 HSPs)
scaffold1800 (188-224)||(626-662)
[»] scaffold0059 (1 HSPs)
scaffold0059 (188-224)||(49748-49784)
[»] scaffold0058 (1 HSPs)
scaffold0058 (176-224)||(59653-59701)
[»] scaffold0017 (1 HSPs)
scaffold0017 (176-224)||(23620-23668)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 11808409 - 11808192
Alignment:
Q  3 gtatcagtaaaatttcacttgttaatcatgcatcgaaagaatttatatgaagccaattagtcataaatagttaattcaaaattcacgcatcaattcaaaa 102  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11808409 gtattagtaaaatttcacttgttaatcatgcatcgaaagaatttatatgaagccaattagtcataaatagttaattcaaaattcacgcatcaattcaaaa 11808310  T
Q  103 acaagaacagtccgctaaccggtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaattacatacttatgattaaagaaggt 202  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11808309 acaagaacagtccgctaaccggtttcaaatcctaattctgaaacatcaaaacctattaacaactacaaggttaaattacatacttatgattaaagaaggt 11808210  T
Q  203 tagtttcacccttacctt 220  Q
    |||| |||||||||||||    
T  11808209 tagtctcacccttacctt 11808192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 23074104 - 23074231
Alignment:
Q  3 gtatcagtaaaatttcacttgttaatcatgcatcgaaagaatttatatgaagccaattagtcataaatagttaattcaaaattcacgcatcaattcaaaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23074104 gtatcagtaaaatttcacttgttaatcatgcatcgaaagaatttatatgaagccaattagtcataaatagttaattcaaaattcacgcatcaattcaaaa 23074203  T
Q  103 acaagaacagtccgctaaccggtttcaa 130  Q
    ||||||||||||||||||||||||||||    
T  23074204 acaagaacagtccgctaaccggtttcaa 23074231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 38887197 - 38887086
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||| |||||             |||||||||||||||||||||||||||||||||    
T  38887197 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaagattaaaccctttttcaggattacatacttatgattaaagaaggttagtttca 38887098  T
Q  211 cccttaccttag 222  Q
    ||||||||||||    
T  38887097 cccttaccttag 38887086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 14792673 - 14792562
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| |||||| |||||||||||||| ||||||||||||             |||||||||||||||||||||||||||||  ||    
T  14792673 gtttcaaaccctaattctacaacatcgaaacctattaacaactacaaggttaaaccctttttcaggattacatacttatgattaaagaaggttagtccca 14792574  T
Q  211 cccttaccttag 222  Q
    ||||||||||||    
T  14792573 cccttaccttag 14792562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 18121545 - 18121656
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| | |||||||| ||||||||||||||||||||| |||||||||||             |||||||||||||||||||||||||||| |  ||    
T  18121545 gtttcaaaccttaattctacaacatcaaaacctattaacaactacaaggttaaatcctttttcaggattacatacttatgattaaagaaggttaatccca 18121644  T
Q  211 cccttaccttag 222  Q
    ||||||||||||    
T  18121645 cccttaccttag 18121656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 44892391 - 44892502
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| || |||||||||||||||||| |||||||||||             ||||||||||||||||||||||||||||||  ||    
T  44892391 gtttcaaaccctaattctacaatatcaaaacctattaacaactacaaggttaaatcctttttcaagattacatacttatgattaaagaaggttagtccca 44892490  T
Q  211 cccttaccttag 222  Q
    |||||| |||||    
T  44892491 cccttaacttag 44892502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 41225498 - 41225454
Alignment:
Q  177 attacatacttatgattaaagaaggttagtttcacccttacctta 221  Q
    ||||||||||||||||||||||||||||||  |||||||||||||    
T  41225498 attacatacttatgattaaagaaggttagtcccacccttacctta 41225454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 41226751 - 41226707
Alignment:
Q  177 attacatacttatgattaaagaaggttagtttcacccttacctta 221  Q
    ||||||||||||||||||||||||||||||  |||||||||||||    
T  41226751 attacatacttatgattaaagaaggttagtcccacccttacctta 41226707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 21243802 - 21243761
Alignment:
Q  177 attacatacttatgattaaagaaggttagtttcacccttacc 218  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  21243802 attacatatttatgattaaagaaggttagtctcacccttacc 21243761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 45755535 - 45755573
Alignment:
Q  184 acttatgattaaagaaggttagtttcacccttaccttag 222  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  45755535 acttataattaaagaaggttagtctcacccttaccttag 45755573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 21188080 - 21188031
Alignment:
Q  175 aaattacatacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    |||||| ||||| ||||||||| |||||||||  ||||||||||||||||    
T  21188080 aaattatatactcatgattaaaaaaggttagtcccacccttaccttagat 21188031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 40390112 - 40390145
Alignment:
Q  144 aacatcaaaacctattaacaattacaaggttaaa 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  40390112 aacatcaaaacctattaacaactacaaggttaaa 40390145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 41225564 - 41225511
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| ||||| |||| ||||||||||||||||| ||| | ||||||||||    
T  41225564 gtttcaaaccctaactctacaacatcaaaacctattatcaactgcaaggttaaa 41225511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 41226817 - 41226764
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| ||||| |||| ||||||||||||||||| ||| | ||||||||||    
T  41226817 gtttcaaaccctaactctacaacatcaaaacctattatcaactgcaaggttaaa 41226764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 22474698 - 22474811
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||||||||             ||||||||||||||||||||||||||||||  ||    
T  22474698 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaaggttaaaccctttttcaggattacatacttatgattaaagaaggttagtccca 22474797  T
Q  211 cccttaccttagat 224  Q
    ||||||||||||||    
T  22474798 cccttaccttagat 22474811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 29762978 - 29762868
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    ||||||||  ||||||||| ||||||||||| ||||||||| ||||||||||||             |||||||||||||||||||||||||||||||||    
T  29762978 gtttcaaactctaattctacaacatcaaaacttattaacaactacaaggttaaaccctttttcaggattacatacttatgattaaagaaggttagtttca 29762879  T
Q  211 cccttacctta 221  Q
    |||||||||||    
T  29762878 cccttacctta 29762868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 41680243 - 41680132
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||||||||             ||||||||||||||||||||||||||||||  ||    
T  41680243 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaaggttaaaccctttatcaggattacatacttatgattaaagaaggttagtccca 41680144  T
Q  211 cccttaccttag 222  Q
    || |||||||||    
T  41680143 cctttaccttag 41680132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 17978526 - 17978472
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaat 178  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||    
T  17978526 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaaggttaaat 17978472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 22208210 - 22208263
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  22208210 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaaggttaaa 22208263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 21579316 - 21579206
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    ||||| || |||||||||| ||||||||||| ||||||||| ||||||||||||             |||||||||||||||||||||||||||||  ||    
T  21579316 gtttcgaaccctaattctacaacatcaaaacatattaacaactacaaggttaaaccctttttcaggattacatacttatgattaaagaaggttagtcaca 21579217  T
Q  211 cccttacctta 221  Q
    |||||||||||    
T  21579216 cccttacctta 21579206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 36405242 - 36405129
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| | ||||||||  |||||||||||||||||||| ||||||||||||             |||||||||||||||||||||| ||||||  ||    
T  36405242 gtttcaaaccataattctacgacatcaaaacctattaacaactacaaggttaaacccttttcagggattacatacttatgattaaagaaagttagtcaca 36405143  T
Q  211 cccttaccttagat 224  Q
    ||||||||||||||    
T  36405142 cccttaccttagat 36405129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 20517081 - 20517033
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  20517081 aattatatacttatgattaaagaaggttagtcccacccttaccttagat 20517033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 12037274 - 12037164
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| ||| |||||| |||||||||| |||||||||| |||||||||||             |||||||||||||||||||| |||||||||  ||    
T  12037274 gtttcaaaccctgattctacaacatcaaaagctattaacaactacaaggttaaaccctttttcaggattacatacttatgattaaacaaggttagtccca 12037175  T
Q  211 cccttacctta 221  Q
    |||||||||||    
T  12037174 cccttacctta 12037164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 20879485 - 20879527
Alignment:
Q  182 atacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    |||||||||||||||||||||||||  ||||||||||||||||    
T  20879485 atacttatgattaaagaaggttagtcccacccttaccttagat 20879527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 22258417 - 22258364
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| |||||||||| ||||||||||||||| ||||| | ||||||||||    
T  22258417 gtttcaaaacctaattctacaacatcaaaacctatcaacaactgcaaggttaaa 22258364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 22966772 - 22966805
Alignment:
Q  144 aacatcaaaacctattaacaattacaaggttaaa 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  22966772 aacatcaaaacctattaacaactacaaggttaaa 22966805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 19566028 - 19565915
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||||||||             ||||||||||||||||||||||||||||||  ||    
T  19566028 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaaggttaaaccctttttcaggattacatacttatgattaaagaaggttagtacca 19565929  T
Q  211 cccttaccttagat 224  Q
    ||||||||||||||    
T  19565928 cccttaccttagat 19565915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 12623258 - 12623371
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||||||||             ||||||||| ||||||||||||||||||||  ||    
T  12623258 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaaggttaaaccctttttcaggattacatacctatgattaaagaaggttagtccca 12623357  T
Q  211 cccttaccttagat 224  Q
    ||||||||||||||    
T  12623358 cccttaccttagat 12623371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 33243404 - 33243291
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||| |||||             |||||||||||||||||||||| |||||| |||    
T  33243404 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaagattaaaccctatttcaagattacatacttatgattaaagaatgttagtctca 33243305  T
Q  211 cccttaccttagat 224  Q
    ||||||||||||||    
T  33243304 cccttaccttagat 33243291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 44023713 - 44023600
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| |||||||||||||| |||||| ||||||||||||             |||||||||||||||||||||||||||||  ||    
T  44023713 gtttcaaaccctaattctacaacatcaaaacctactaacaagtacaaggttaaaccctttttcaagattacatacttatgattaaagaaggttagtcgca 44023614  T
Q  211 cccttaccttagat 224  Q
    ||||||||||||||    
T  44023613 cccttaccttagat 44023600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 40230248 - 40230361
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||| |||||             ||||||||||||||||||||||| ||||||  ||    
T  40230248 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaatgttaaaccctttttcaagattacatacttatgattaaagaaagttagtccca 40230347  T
Q  211 cccttaccttagat 224  Q
    ||||||||||||||    
T  40230348 cccttaccttagat 40230361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 33186844 - 33186897
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| |||||||||| |||||||||||||||||||||  |||||||||||    
T  33186844 gtttcaaaccctaattctacaacatcaaaacctattaacaaccacaaggttaaa 33186897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 46741141 - 46741194
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| |||||||||| |||||||||||| |||||||| ||||||||||||    
T  46741141 gtttcaaaccctaattctacaacatcaaaaccaattaacaactacaaggttaaa 46741194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 12424399 - 12424350
Alignment:
Q  128 caaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||| |||||||||| ||||||||||||||||||||| ||||| ||||||    
T  12424399 caaaccctaattctacaacatcaaaacctattaacaactacaaagttaaa 12424350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 14477638 - 14477686
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||| ||||| |||||||||||||||||||  ||||||||||||||||    
T  14477638 aattatatactcatgattaaagaaggttagtgccacccttaccttagat 14477686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 13165145 - 13165187
Alignment:
Q  182 atacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||| |||||||||||||||||||  ||||||||||||||||    
T  13165145 atactcatgattaaagaaggttagtcccacccttaccttagat 13165187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 20150787 - 20150821
Alignment:
Q  144 aacatcaaaacctattaacaattacaaggttaaat 178  Q
    ||||||||||||||||||||| |||||||||||||    
T  20150787 aacatcaaaacctattaacaactacaaggttaaat 20150821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 26921554 - 26921508
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttag 222  Q
    |||||||||||||||||||| ||||||||||   |||||||||||||    
T  26921554 aattacatacttatgattaatgaaggttagtcctacccttaccttag 26921508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 46741207 - 46741252
Alignment:
Q  177 attacatacttatgattaaagaaggttagtttcacccttaccttag 222  Q
    |||||||| |||||||||||||||||||||  ||| ||||||||||    
T  46741207 attacatatttatgattaaagaaggttagtcccacacttaccttag 46741252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 18463030 - 18463078
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||| ||||| |||||||||||||||||||  |||| |||||||||||    
T  18463030 aattatatactcatgattaaagaaggttagtcccacctttaccttagat 18463078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0630 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0630
Description:

Target: scaffold0630; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 9005 - 9118
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||| |||||             |||||||||||||||||||||||||||||  ||    
T  9005 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaagattaaaccctttttcaggattacatacttatgattaaagaaggttagtccca 9104  T
Q  211 cccttaccttagat 224  Q
    ||||||||||||||    
T  9105 cccttaccttagat 9118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 62660 - 62773
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| |||||||||||||||||||||  |||||||||||             ||||||||||||||||||||||||||||| |||    
T  62660 gtttcaaaccctaattctacaacatcaaaacctattaacaaccacaaggttaaaccctttttcaggattacatacttatgattaaagaaggttagtctca 62759  T
Q  211 cccttaccttagat 224  Q
     |||||||||||||    
T  62760 tccttaccttagat 62773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 56918 - 57026
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa----------attacatacttatgattaaagaaggttagtttcaccc 213  Q
    |||||||| |||||||||| ||||||||||||||||||||  ||||||||||           ||||||||||||||||||||||||||||||  |||||    
T  56918 gtttcaaaccctaattctacaacatcaaaacctattaacatctacaaggttacctttttcaggattacatacttatgattaaagaaggttagtcccaccc 57017  T
Q  214 ttaccttag 222  Q
    |||||||||    
T  57018 ttaccttag 57026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 53646169 - 53646056
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||||||||             |||||||| |||||||||||||||||||||  ||    
T  53646169 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaaggttaaaccctttttcaggattacatatttatgattaaagaaggttagtccca 53646070  T
Q  211 cccttaccttagat 224  Q
    ||||||||||||||    
T  53646069 cccttaccttagat 53646056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 54330417 - 54330364
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  54330417 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaaggttaaa 54330364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 14152510 - 14152457
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| |||||||||| |||||||||||||| |||||| ||||||||||||    
T  14152510 gtttcaaaccctaattctacaacatcaaaacctactaacaactacaaggttaaa 14152457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 3160672 - 3160624
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  3160672 aattatatactcatgattaaagaaggttagtctcacccttaccttagat 3160624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 21845691 - 21845649
Alignment:
Q  182 atacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    |||||||||||||||||||||||||  ||||||||||||||||    
T  21845691 atacttatgattaaagaaggttagtcccacccttaccttagat 21845649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 5215588 - 5215641
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||| ||| |||||||||| |||||||||||||||||| || ||||||||||||    
T  5215588 gttttaaaccctaattctacaacatcaaaacctattaataactacaaggttaaa 5215641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 50350861 - 50350813
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||| ||||| |||||||||||||||||||  ||||||||||||||||    
T  50350861 aattatatactcatgattaaagaaggttagtcccacccttaccttagat 50350813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 48631348 - 48631386
Alignment:
Q  186 ttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  48631348 ttatgattaaagaaggttagtcccacccttaccttagat 48631386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 15566706 - 15566738
Alignment:
Q  145 acatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||||||||||||||| ||||||||||||    
T  15566706 acatcaaaacctattaacaactacaaggttaaa 15566738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 23968733 - 23968624
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||| | ||||||||||||             ||||||||||||||||||||||||||||| |||    
T  23968733 gtttcaaaccctaattctacaacatcaaaacctattaacgactacaaggttaaaccttttttcaggattacatacttatgattaaagaaggttagtctca 23968634  T
Q  211 cccttacctt 220  Q
    ||||||||||    
T  23968633 cccttacctt 23968624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 19647240 - 19647288
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  19647240 aattatatacttatgattaaagaaggttagtctcacccataccttagat 19647288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 28652597 - 28652549
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    |||||||||||||||||||| ||||||||||  ||||||||||||||||    
T  28652597 aattacatacttatgattaatgaaggttagtcccacccttaccttagat 28652549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 14179772 - 14179728
Alignment:
Q  177 attacatacttatgattaaagaaggttagtttcacccttacctta 221  Q
    |||||||||| |||||||||||||||||||  |||||||||||||    
T  14179772 attacatactcatgattaaagaaggttagtcccacccttacctta 14179728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 14183510 - 14183466
Alignment:
Q  177 attacatacttatgattaaagaaggttagtttcacccttacctta 221  Q
    |||||||||| |||||||||||||||||||  |||||||||||||    
T  14183510 attacatactcatgattaaagaaggttagtcccacccttacctta 14183466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 14183576 - 14183522
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaat 178  Q
    |||||||| |||||||| | ||||||||||||||||||||| || |||| |||||    
T  14183576 gtttcaaaccctaattccacaacatcaaaacctattaacaagtataaggataaat 14183522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 24717961 - 24718014
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| || ||||||  |||||||||||||||| |||| ||||||||||||    
T  24717961 gtttcaaacccgaattctgcaacatcaaaacctattgacaaatacaaggttaaa 24718014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 24718027 - 24718067
Alignment:
Q  177 attacatacttatgattaaagaaggttagtttcacccttac 217  Q
    ||||||||||||||||||||||| ||||||  |||||||||    
T  24718027 attacatacttatgattaaagaatgttagtcccacccttac 24718067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 20142 - 20194
Alignment:
Q  125 tttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  20142 tttcaaaccctaattctaaaacatcaaaacctattaacaactacaaggttaaa 20194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 4363 - 4474
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||||||||             |||| |||||||||||||||||||||||||  ||    
T  4363 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaaggttaaaccttttttcgggattatatacttatgattaaagaaggttagtccca 4462  T
Q  211 cccttaccttag 222  Q
    ||||||||||||    
T  4463 cccttaccttag 4474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 287 - 398
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||||||||             |||||||||||||||||||||||| ||| | |||    
T  287 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaaggttaaaccctttttcaggattacatacttatgattaaagaagattaatctca 386  T
Q  211 cccttaccttag 222  Q
    ||||||||||||    
T  387 cccttaccttag 398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 10556 - 10445
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||             |||||||||||||||||||||||||||||  ||    
T  10556 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaatgttaaaccctttttcaggattacatacttatgattaaagaaggttagtccca 10457  T
Q  211 cccttaccttag 222  Q
    ||||||||||||    
T  10456 cccttaccttag 10445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 3882 - 3927
Alignment:
Q  177 attacatacttatgattaaagaaggttagtttcacccttaccttag 222  Q
    |||||||||||||| |||||||||||| ||  ||||||||||||||    
T  3882 attacatacttatgtttaaagaaggttggtcacacccttaccttag 3927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 174163 - 174274
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||||||||             ||||||||||||||||||||||||||||||  ||    
T  174163 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaaggttaaaccctttttcaggattacatacttatgattaaagaaggttagtccca 174262  T
Q  211 cccttaccttag 222  Q
    ||||||| ||||    
T  174263 cccttactttag 174274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 7217353 - 7217243
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||| ||||||||||| ||||||||||||             ||||||||||||||||||||||||||||| |||    
T  7217353 gtttcaaaccctaattctacaacatcaaa-cctattaacaactacaaggttaaaccctttttcaggattacatacttatgattaaagaaggttagtctca 7217255  T
Q  211 cccttaccttag 222  Q
    ||||||||||||    
T  7217254 cccttaccttag 7217243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 23431557 - 23431444
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||| ||| |||||||||||             ||||||||||||||||||||||||||||||  ||    
T  23431557 gtttcaaaccctaattctacaacatcaaaacctattagcaactacaaggttaaaccctttttcaggattacatacttatgattaaagaaggttagtccca 23431458  T
Q  211 cccttaccttagat 224  Q
    | ||||||||||||    
T  23431457 cgcttaccttagat 23431444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 25921943 - 25922056
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| | |||||||| ||||||||||||||||||||| |||||||||||             |||||||||||||||||||| |||||||||  ||    
T  25921943 gtttcaaaccttaattctacaacatcaaaacctattaacaactacaaggttaaacccttttttaggattacatacttatgattaaataaggttagtccca 25922042  T
Q  211 cccttaccttagat 224  Q
    ||||||||||||||    
T  25922043 cccttaccttagat 25922056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 18455183 - 18455072
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| || |||||||||||||||||| |||||||||||             |||||||||||||||||||||||||||| |  ||    
T  18455183 gtttcaaaccctaattctacaatatcaaaacctattaacaactacaaggttaaaacctttttcaggattacatacttatgattaaagaaggttactccca 18455084  T
Q  211 cccttaccttag 222  Q
    ||||||||||||    
T  18455083 cccttaccttag 18455072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 31734649 - 31734760
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| ||||||| || ||||||||||||||||||||| | ||||||||||             |||||||||||||||||||||||||||||  ||    
T  31734649 gtttcaaaccctaattttacaacatcaaaacctattaacaactgcaaggttaaaccctttttcagaattacatacttatgattaaagaaggttagtccca 31734748  T
Q  211 cccttaccttag 222  Q
    ||||||||||||    
T  31734749 cccttaccttag 31734760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 22557190 - 22557243
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| || ||||||| ||||||||||||||||||||| ||||||||||||    
T  22557190 gtttcaaacccgaattctacaacatcaaaacctattaacaactacaaggttaaa 22557243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 23658030 - 23658083
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||    
T  23658030 gtttcaaacccttattctacaacatcaaaacctattaacaactacaaggttaaa 23658083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 32259787 - 32259900
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||| |||||| || ||||||||||||             |||||||||||||||||||||||||||||  ||    
T  32259787 gtttcaaaccctaattctacaacatcaaaacttattaaaaactacaaggttaaactctttttcaggattacatacttatgattaaagaaggttagtcaca 32259886  T
Q  211 cccttaccttagat 224  Q
    ||||||||| ||||    
T  32259887 cccttacctaagat 32259900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 1818965 - 1819007
Alignment:
Q  182 atacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  1818965 atactcatgattaaagaaggttagtctcacccttaccttagat 1819007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 25601375 - 25601327
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    |||||||| ||||||||||| |||||||||| || ||||||||||||||    
T  25601375 aattacattcttatgattaatgaaggttagtctctcccttaccttagat 25601327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 31166259 - 31166295
Alignment:
Q  188 atgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  31166259 atgattaaagatggttagtctcacccttaccttagat 31166295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 26762344 - 26762455
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||||||||             |||||||| |||||||||||||||||||||  ||    
T  26762344 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaaggttaaaccctttttcaggattacataattatgattaaagaaggttagtccca 26762443  T
Q  211 cccttaccttag 222  Q
    ||||||||||||    
T  26762444 cccttaccttag 26762455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 8503998 - 8503888
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||||||||             ||||||||||||||||| ||||||||||||  ||    
T  8503998 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaaggttaaactcttgttcaggattacatacttatgattgaagaaggttagtccca 8503899  T
Q  211 cccttacctta 221  Q
    |||||||||||    
T  8503898 cccttacctta 8503888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 14025917 - 14025804
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| ||||||| || |||||||||| |||||||||| ||||||||||||             |||||||||||||||||||||||||||||  ||    
T  14025917 gtttcaaaccctaattatacaacatcaaaatctattaacaactacaaggttaaaccctttttcaggattacatacttatgattaaagaaggttagtccca 14025818  T
Q  211 cccttaccttagat 224  Q
    ||||||||||||||    
T  14025817 cccttaccttagat 14025804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 1627018 - 1626917
Alignment:
Q  134 ctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttcacccttacctt 220  Q
    |||||| || ||||||||||||||||||||| |||||||||||             ||||||||||||||||||||||||||||||  ||||||||||||    
T  1627018 ctaattttacaacatcaaaacctattaacaactacaaggttaaaccctttttcaggattacatacttatgattaaagaaggttagtcacacccttacctt 1626919  T
Q  221 ag 222  Q
    ||    
T  1626918 ag 1626917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 8833316 - 8833263
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| |||||||||| ||||||||||||||||||||| || |||||||||    
T  8833316 gtttcaaaccctaattctacaacatcaaaacctattaacaactataaggttaaa 8833263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 26749982 - 26750084
Alignment:
Q  133 cctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttcacccttacct 219  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||             ||| ||||||||||||||| ||||||||| ||||||||||||    
T  26749982 cctaattctacaacatcaaaacttattaacaactacaaggttaaaccccttttcaggattatatacttatgattaaaaaaggttagtctcacccttacct 26750081  T
Q  220 tag 222  Q
    |||    
T  26750082 tag 26750084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 21504152 - 21504194
Alignment:
Q  182 atacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    |||||||||||||||||||||||||  |||| |||||||||||    
T  21504152 atacttatgattaaagaaggttagtcccacctttaccttagat 21504194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 8833250 - 8833209
Alignment:
Q  177 attacatacttatgattaaagaaggttagtttcacccttacc 218  Q
    |||||||||||||||||||||||||| |||  ||||||||||    
T  8833250 attacatacttatgattaaagaaggtcagtcccacccttacc 8833209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 24068191 - 24068224
Alignment:
Q  144 aacatcaaaacctattaacaattacaaggttaaa 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  24068191 aacatcaaaacctattaacaactacaaggttaaa 24068224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 14160966 - 14160856
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||||||||             ||||||||||||||||||||||||||||||  ||    
T  14160966 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaaggttaaaccccttttcaggattacatacttatgattaaagaaggttagtccca 14160867  T
Q  211 cccttacctta 221  Q
    |||||| ||||    
T  14160866 cccttatctta 14160856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 14318014 - 14318127
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| | |||||||||             ||||||||||||||||||||||||||| ||  ||    
T  14318014 gtttcaaaccctaattctacaacatcaaaacctattaacaactgcaaggttaaaccctttttcaggattacatacttatgattaaagaaggtttgtccca 14318113  T
Q  211 cccttaccttagat 224  Q
    ||||||||||||||    
T  14318114 cccttaccttagat 14318127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 43276854 - 43276801
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  43276854 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaaggttaaa 43276801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 15119417 - 15119306
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaa-------------attacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| |||||||||| |||||||||| |||||||||||             ||||||||||||||||||||||||||||||   |    
T  15119417 gtttcaaaccctaattctacaacatcaaaatctattaacaactacaaggttaaaccctttttcaagattacatacttatgattaaagaaggttagtccta 15119318  T
Q  211 cccttaccttag 222  Q
    ||||||||||||    
T  15119317 cccttaccttag 15119306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 9743189 - 9743136
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||    
T  9743189 gtttcaaaccctaattctacaacatcaaaacttattaacaactacaaggttaaa 9743136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 8513864 - 8513811
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| |||||||||| | ||||||||||||| ||||| ||||||||||||    
T  8513864 gtttcaaaccctaattctacagcatcaaaacctataaacaactacaaggttaaa 8513811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 42565878 - 42565830
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||| ||| ||||||||||||||| ||||| |||||||||||||||||    
T  42565878 aattatatatttatgattaaagaagattagtctcacccttaccttagat 42565830  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 9743123 - 9743094
Alignment:
Q  177 attacatacttatgattaaagaaggttagt 206  Q
    ||||||||||||||||||||||||||||||    
T  9743123 attacatacttatgattaaagaaggttagt 9743094  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 33060457 - 33060493
Alignment:
Q  188 atgattaaagaaggttagtttcacccttaccttagat 224  Q
    |||||||||||||||||||  ||||||||||||||||    
T  33060457 atgattaaagaaggttagtcccacccttaccttagat 33060493  T

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Target: scaffold0401 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 8763 - 8874
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| |||||||||||| |||||||  ||||||||||||             |||||||||||||||||||||||||||||  ||    
T  8763 gtttcaaaccctaattctacaacatcaaaaccgattaacatctacaaggttaaaccctttttcaggattacatacttatgattaaagaaggttagtccca 8862  T
Q  211 cccttaccttag 222  Q
    ||||||||||||    
T  8863 cccttaccttag 8874  T

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Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 9973 - 9927
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttag 222  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||    
T  9973 aattacatacttatgattaaagaaggttagtcccacccttaccttag 9927  T

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Target: scaffold0039; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 10038 - 9990
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaagg 172  Q
    |||||||| |||||||||| |||||||||||||||||  || |||||||    
T  10038 gtttcaaaccctaattctacaacatcaaaacctattagaaactacaagg 9990  T

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Target: scaffold1160 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 626 - 679
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||    
T  626 gtttcaaaccctaattctacaacatcaaaacctattaacaactacaatgttaaa 679  T

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Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 33396 - 33509
Alignment:
Q  124 gtttcaaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa-------------ttacatacttatgattaaagaaggttagtttca 210  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||| | |||||             ||| |||||||||||||||||||||||||  ||    
T  33396 gtttcaaaccctaattctacaacatcaaaacctattaacaactacacgtttaaaccctttttcaggattaaatacttatgattaaagaaggttagtccca 33495  T
Q  211 cccttaccttagat 224  Q
    ||||||||||||||    
T  33496 cccttaccttagat 33509  T

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Target: scaffold0261 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 6465 - 6419
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttag 222  Q
    |||||||||||||||||||| ||||||||||  ||||||||||||||    
T  6465 aattacatacttatgattaatgaaggttagtcccacccttaccttag 6419  T

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Target: scaffold0431 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 5576 - 5625
Alignment:
Q  128 caaatcctaattctaaaacatcaaaacctattaacaattacaaggttaaa 177  Q
    |||| |||||||||| ||||||||||||||||||||| ||||| ||||||    
T  5576 caaaccctaattctacaacatcaaaacctattaacaactacaaagttaaa 5625  T

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Target: scaffold0337 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 3211 - 3259
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||| ||||| |||||||||||||||||||  ||||||||||||||||    
T  3211 aattatatactcatgattaaagaaggttagtcccacccttaccttagat 3259  T

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Target: scaffold0217 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 28720 - 28768
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||| |||||||||||||||||||||||||  ||| ||||||||||||    
T  28720 aattatatacttatgattaaagaaggttagtcccactcttaccttagat 28768  T

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Target: scaffold0092 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 38487 - 38439
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||| ||||| |||||||||||||||||||  ||||||||||||||||    
T  38487 aattatatactcatgattaaagaaggttagtcacacccttaccttagat 38439  T

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Target: scaffold0165 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 31942 - 31984
Alignment:
Q  182 atacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||| ||||||||||| ||||||| |||||||||||||||||    
T  31942 atactcatgattaaagatggttagtctcacccttaccttagat 31984  T

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Target: scaffold1939 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1939
Description:

Target: scaffold1939; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 140 - 181
Alignment:
Q  182 atacttatgattaaagaaggttagtttcacccttaccttaga 223  Q
    ||||| |||||||||||||||||||  |||||||||||||||    
T  140 atactaatgattaaagaaggttagtcccacccttaccttaga 181  T

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Target: scaffold0145 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 8086 - 8119
Alignment:
Q  144 aacatcaaaacctattaacaattacaaggttaaa 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  8086 aacatcaaaacctattaacaactacaaggttaaa 8119  T

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Target: scaffold0125 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 7256 - 7223
Alignment:
Q  191 attaaagaaggttagtttcacccttaccttagat 224  Q
    |||||||||||||||| |||||||||||||||||    
T  7256 attaaagaaggttagtctcacccttaccttagat 7223  T

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Target: scaffold0120 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 29273 - 29306
Alignment:
Q  144 aacatcaaaacctattaacaattacaaggttaaa 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  29273 aacatcaaaacctattaacaactacaaggttaaa 29306  T

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Target: scaffold1800 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1800
Description:

Target: scaffold1800; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 626 - 662
Alignment:
Q  188 atgattaaagaaggttagtttcacccttaccttagat 224  Q
    |||||||||||||||||||  ||||||||||||||||    
T  626 atgattaaagaaggttagtcccacccttaccttagat 662  T

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Target: scaffold0059 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 49748 - 49784
Alignment:
Q  188 atgattaaagaaggttagtttcacccttaccttagat 224  Q
    |||||||||||||||||||  ||||||||||||||||    
T  49748 atgattaaagaaggttagtcccacccttaccttagat 49784  T

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Target: scaffold0058 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 59701 - 59653
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||| ||||| ||||||||||||||||||   ||||||||||||||||    
T  59701 aattatatactcatgattaaagaaggttagacccacccttaccttagat 59653  T

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Target: scaffold0017 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 23620 - 23668
Alignment:
Q  176 aattacatacttatgattaaagaaggttagtttcacccttaccttagat 224  Q
    ||||| ||||| ||||||||||||||| |||  ||||||||||||||||    
T  23620 aattatatactcatgattaaagaaggtcagtcccacccttaccttagat 23668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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