View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_14 (Length: 531)

Name: NF18993_low_14
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_14
NF18993_low_14
[»] chr4 (5 HSPs)
chr4 (3-512)||(25605877-25606388)
chr4 (95-145)||(40613275-40613325)
chr4 (94-155)||(22523774-22523835)
chr4 (112-166)||(37636119-37636173)
chr4 (105-169)||(37734078-37734142)
[»] chr5 (2 HSPs)
chr5 (105-167)||(1084065-1084127)
chr5 (114-155)||(37968971-37969012)
[»] chr3 (5 HSPs)
chr3 (112-169)||(24158449-24158506)
chr3 (112-169)||(22667483-22667540)
chr3 (112-169)||(22724122-22724179)
chr3 (112-153)||(44237513-44237554)
chr3 (94-130)||(43875585-43875621)
[»] chr2 (3 HSPs)
chr2 (112-167)||(40943995-40944050)
chr2 (105-155)||(37419593-37419643)
chr2 (112-169)||(5759508-5759565)
[»] chr1 (1 HSPs)
chr1 (112-155)||(50998638-50998681)
[»] chr8 (2 HSPs)
chr8 (113-167)||(8535989-8536043)
chr8 (114-155)||(25881350-25881391)
[»] chr7 (2 HSPs)
chr7 (97-155)||(24048634-24048692)
chr7 (98-144)||(41040270-41040316)
[»] chr6 (3 HSPs)
chr6 (98-144)||(7351590-7351636)
chr6 (105-154)||(29249488-29249537)
chr6 (121-169)||(33385609-33385657)
[»] scaffold0426 (1 HSPs)
scaffold0426 (113-169)||(4296-4352)


Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 3 - 512
Target Start/End: Complemental strand, 25606388 - 25605877
Alignment:
Q  3 aggagcagcacagactcggtatgcagtttttgtcttaatgagttaaattcattgcttcgtgtatacaggagctgttcttgacaatactcatggtttgttt 102  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25606388 aggagcagctcagactcggtattcagtttttgtattaatgagttaaattcattgcttcgtgtatacaggagctgttcttgacaatactcatggtttgttt 25606289  T
Q  103 caattgacgtatttgagtttatctactgatataagtacttgtaaaactgtttgcgaaagtttatggagcaacttataacacgactttcaacttattttca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25606288 caattgacgtatttgagtttatctactgatataagtacttgtaaaactgtttgcgaaagtttatggagcaacttataacacgactttcaacttattttca 25606189  T
Q  203 taggctctcacaaacgatgtgacttgtattccnnnnnnnnnnnnntgatgcggc-ttttttatctttgttgtagaaatcgcttatacataaacgtactta 301  Q
    ||||||||||||||||||||||||||||||||             ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25606188 taggctctcacaaacgatgtgacttgtattcc-aaaaagaaaaaatgatgcggctttttttatctttgttgtagaaatcgcttatacataaacgtactta 25606090  T
Q  302 taagttaatcaagatttttatccgaacagggtctcagtttgatatgataattatatgtttggtattttacttggtattatac--nnnnnnnnattgttcc 399  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||    
T  25606089 gaagttaatcaagatgtttatccgaacagggtctcagtttgatatgataattatatgtttggtattttacttggtattatacttttttttttattgttcc 25605990  T
Q  400 ctccataatcatgtgttctggtaaattatataaggtaagtcttagggaatggtattataattaggaattacatcagatataatagttgtatctaatagat 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25605989 ctccataatcatgtgttctggtaaattatataaggtaagtcttagggaatggtattataattaggaattacatcagatataatagttgtatctaatagat 25605890  T
Q  500 ttggtgggtttag 512  Q
    |||||||||||||    
T  25605889 ttggtgggtttag 25605877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 40613325 - 40613275
Alignment:
Q  95 gtttgtttcaattgacgtatttgagtttatctactgatataagtacttgta 145  Q
    |||||||||||||||| ||||||||||||||||| ||| |||| |||||||    
T  40613325 gtttgtttcaattgacttatttgagtttatctaccgatttaagcacttgta 40613275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 22523835 - 22523774
Alignment:
Q  94 ggtttgtttcaattgacgtatttgagtttatctactgatataagtacttgtaaaactgtttg 155  Q
    |||||||||| |||||  |||| ||||||||||||||| |||||||||||| | ||||||||    
T  22523835 ggtttgtttctattgatttattcgagtttatctactgacataagtacttgtgagactgtttg 22523774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 37636119 - 37636173
Alignment:
Q  112 tatttgagtttatctactgatataagtacttgtaaaactgtttgcgaaagtttat 166  Q
    |||||||||||||||||| | ||||| || |||||||||||||| || |||||||    
T  37636119 tatttgagtttatctactaacataagcacctgtaaaactgtttgggagagtttat 37636173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 37734142 - 37734078
Alignment:
Q  105 attgacgtatttgagtttatctactgatataagtacttgtaaaactgtttgcgaaagtttatgga 169  Q
    |||||||||||||||||||||||||||| |||  | |||| ||| |||||  || ||||||||||    
T  37734142 attgacgtatttgagtttatctactgatgtaaacatttgtgaaattgttttggagagtttatgga 37734078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 1084065 - 1084127
Alignment:
Q  105 attgacgtatttgagtttatctactgatataagtacttgtaaaactgtttgcgaaagtttatg 167  Q
    |||||| ||||||||||||| |||||| ||||| |||||| |||||||||| || ||||||||    
T  1084065 attgacttatttgagtttatttactgacataagcacttgtgaaactgtttgagagagtttatg 1084127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 37969012 - 37968971
Alignment:
Q  114 tttgagtttatctactgatataagtacttgtaaaactgtttg 155  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  37969012 tttgagcttatctactgacataagtacttgtgaaactgtttg 37968971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 24158449 - 24158506
Alignment:
Q  112 tatttgagtttatctactgatataagtacttgtaaaactgtttgcgaaagtttatgga 169  Q
    ||||| || ||||||||||| |||||||||||| ||||||||||||| || |||||||    
T  24158449 tatttaagcttatctactgacataagtacttgtgaaactgtttgcgagagcttatgga 24158506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 22667540 - 22667483
Alignment:
Q  112 tatttgagtttatctactgatataagtacttgtaaaactgtttgcgaaagtttatgga 169  Q
    |||||||| ||||||||||| ||||| |||||| | |||||||| || ||||||||||    
T  22667540 tatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatgga 22667483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 22724179 - 22724122
Alignment:
Q  112 tatttgagtttatctactgatataagtacttgtaaaactgtttgcgaaagtttatgga 169  Q
    |||||||| ||||||||||| ||||| |||||| | |||||||| || ||||||||||    
T  22724179 tatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatgga 22724122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 44237554 - 44237513
Alignment:
Q  112 tatttgagtttatctactgatataagtacttgtaaaactgtt 153  Q
    |||||||||||||||||||| ||||| |||||| ||||||||    
T  44237554 tatttgagtttatctactgacataagcacttgtgaaactgtt 44237513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 43875621 - 43875585
Alignment:
Q  94 ggtttgtttcaattgacgtatttgagtttatctactg 130  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  43875621 ggtttgtttgaattgacttatttgagtttatctactg 43875585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 40944050 - 40943995
Alignment:
Q  112 tatttgagtttatctactgatataagtacttgtaaaactgtttgcgaaagtttatg 167  Q
    |||||||||||||||| ||| ||||| |||||| ||||||||||  ||||||||||    
T  40944050 tatttgagtttatctaatgacataagcacttgtgaaactgtttggaaaagtttatg 40943995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 37419593 - 37419643
Alignment:
Q  105 attgacgtatttgagtttatctactgatataagtacttgtaaaactgtttg 155  Q
    |||||| |||||||||||||||||| ||||||| |||||| ||||| ||||    
T  37419593 attgacttatttgagtttatctacttatataagcacttgtgaaactctttg 37419643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 5759508 - 5759565
Alignment:
Q  112 tatttgagtttatctactgatataagtacttgtaaaactgtttgcgaaagtttatgga 169  Q
    |||||||||||||||| || ||||||||||||| | |||||||| || || |||||||    
T  5759508 tatttgagtttatctattggtataagtacttgtgagactgtttgggagagcttatgga 5759565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 50998681 - 50998638
Alignment:
Q  112 tatttgagtttatctactgatataagtacttgtaaaactgtttg 155  Q
    |||||||||||||||| ||||||||| |||| ||||||||||||    
T  50998681 tatttgagtttatctattgatataagaacttataaaactgtttg 50998638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 8535989 - 8536043
Alignment:
Q  113 atttgagtttatctactgatataagtacttgtaaaactgtttgcgaaagtttatg 167  Q
    |||||| |||||||||||| |||||||||||| | |||||||| || ||||||||    
T  8535989 atttgaatttatctactgacataagtacttgtgagactgtttgggagagtttatg 8536043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 25881350 - 25881391
Alignment:
Q  114 tttgagtttatctactgatataagtacttgtaaaactgtttg 155  Q
    |||||||||||||||||| |||||||||||| | ||||||||    
T  25881350 tttgagtttatctactgacataagtacttgtgagactgtttg 25881391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 24048692 - 24048634
Alignment:
Q  97 ttgtttcaattgacgtatttgagtttatctactgatataagtacttgtaaaactgtttg 155  Q
    |||||| |||| || |||||||||||||||||||| ||||||||||  || ||||||||    
T  24048692 ttgtttgaatttacttatttgagtttatctactgacataagtacttaaaagactgtttg 24048634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 41040316 - 41040270
Alignment:
Q  98 tgtttcaattgacgtatttgagtttatctactgatataagtacttgt 144  Q
    ||||| ||||||  |||||||||||||||||||||||||||| ||||    
T  41040316 tgtttgaattgatttatttgagtttatctactgatataagtatttgt 41040270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 7351590 - 7351636
Alignment:
Q  98 tgtttcaattgacgtatttgagtttatctactgatataagtacttgt 144  Q
    ||||| ||||||| |||||||||||||||||||| ||||| ||||||    
T  7351590 tgtttaaattgacttatttgagtttatctactgacataagcacttgt 7351636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 29249537 - 29249488
Alignment:
Q  105 attgacgtatttgagtttatctactgatataagtacttgtaaaactgttt 154  Q
    |||||| |||||||| |||| ||||| ||||||||||||||| |||||||    
T  29249537 attgacttatttgagcttatttactgttataagtacttgtaagactgttt 29249488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 33385657 - 33385609
Alignment:
Q  121 ttatctactgatataagtacttgtaaaactgtttgcgaaagtttatgga 169  Q
    ||||||||||||||||| |||||| ||||||||||  | ||||||||||    
T  33385657 ttatctactgatataagcacttgtgaaactgtttggaagagtttatgga 33385609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 4352 - 4296
Alignment:
Q  113 atttgagtttatctactgatataagtacttgtaaaactgtttgcgaaagtttatgga 169  Q
    ||||||||||||||||||||| || || |||| | ||||||||  ||||||||||||    
T  4352 atttgagtttatctactgataaaaatatttgtgagactgtttgaaaaagtttatgga 4296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University