View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_140 (Length: 229)
Name: NF18993_low_140
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_140 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 51855897 - 51856097
Alignment:
| Q |
21 |
caaaagctattctccaacaacataattctaacattttatattcaaataaagttaagtcaacatgaacaaacattttnnnnnnn-cattaactagatcaaa |
119 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51855897 |
caaaggctattctccaataacataattctaacattttatattcaagtaaagttaagtcaacatgaacaaacattttaaaaaaaacattaactagatcaaa |
51855996 |
T |
|
| Q |
120 |
ttcaaacattaactaattaaacctgtttttgtctagaagcggcatcaagtaatgtccaaaacctcagcgtcaaggtccacctcacatcatgttcatctca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51855997 |
ttcaaacattaactaattaaacctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtccacctcacatcatgttcttctca |
51856096 |
T |
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| Q |
220 |
c |
220 |
Q |
| |
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| T |
51856097 |
c |
51856097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 8945084 - 8945283
Alignment:
| Q |
21 |
caaaagctattctccaacaacataattctaacattttatattcaaataaagttaagtcaacatgaacaaacattttnnnnnnncattaactagatcaaat |
120 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8945084 |
caaaggctattctccaataacataattctaacattttatattcaagtaaagttaagtcaacatgaacaaacattttaaaaaaacattaactagatcaaat |
8945183 |
T |
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| Q |
121 |
tcaaacattaactaattaaacctgtttttgtctagaagcggcatcaagtaatgtccaaaacctcagcgtcaaggtccacctcacatcatgttcatctcac |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||| |
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| T |
8945184 |
tcaaacattaactaattaaacctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcttctcac |
8945283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 24269829 - 24269889
Alignment:
| Q |
138 |
aaacctgtttttgtctagaagcggcatcaagtaatgtccaaaacctcagcgtcaaggtccac |
199 |
Q |
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|||||||||| ||||||||||| | ||||||| ||||||||||||||||| ||| ||||||| |
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| T |
24269829 |
aaacctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagcatcagggtccac |
24269889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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