View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_141 (Length: 228)
Name: NF18993_low_141
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_141 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 8326738 - 8326924
Alignment:
| Q |
10 |
gtttcataaatggtaaagttaaaagaaaaaactacgtcaaattccttgatgttcattttatatataagttttaaatataagattatggtaattttatata |
109 |
Q |
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| T |
8326738 |
gtttaataaatggtaaagttaaaagaaaaaactacgtcaaattccttgatgttcattttatatat-------------aagattatggtaattttatata |
8326824 |
T |
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| Q |
110 |
ttgcttgagttcaaaccatcacctttgagtaaatataaggtgcaaaatggaaatatgagtctattttacttctttttcttttgggttgtgctaacaagta |
209 |
Q |
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| T |
8326825 |
ttgcttgagttcaaaccatcacctttgagtaaatataaggtgcaaaattgaaatatgagtctattttacttctttttcttttgggttgtgctaacaagta |
8326924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 8325839 - 8325913
Alignment:
| Q |
117 |
agttcaaaccatcacctttgagtaaata--taaggtgcaaaatggaaatatgagtctattttacttctttttctt |
189 |
Q |
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| T |
8325839 |
agttcaaatcaccacctttgagtaaaaaaataaggtgcaaaattgaaatatgagtctattttacttctttttctt |
8325913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 8331690 - 8331755
Alignment:
| Q |
10 |
gtttcataaatggtaaagttaaaagaaaaaactacgtcaaattccttgatgttcattttatatata |
75 |
Q |
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| T |
8331690 |
gtttaataaataataaagttaaaagaaaaaactacatcaaattccttgatgttcaatttatatata |
8331755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 7510697 - 7510659
Alignment:
| Q |
117 |
agttcaaaccatcacctttgagtaaatataaggtgcaaa |
155 |
Q |
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| T |
7510697 |
agttcaaaccatcacatttgagtaaaaataaggtgcaaa |
7510659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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