View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_144 (Length: 227)
Name: NF18993_low_144
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_144 |
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| [»] scaffold0012 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 31810417 - 31810609
Alignment:
| Q |
26 |
tatgtgaaatatttgattttaatcttttaaaataaagactaaaatgtatattataaagaaaccaatgatttgccaatgtggttgatgagtttcactcaaa |
125 |
Q |
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| T |
31810417 |
tatgtgaaatacttgattttaatcttttaaaataaagactaaaatgtatattataaagaaaccaatgatttgccaatgtggttgatgagtttcactcaaa |
31810516 |
T |
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| Q |
126 |
tgatgaatcgtttggaagaacccaaattcaatttctgagtgaaatagttattgattagactatatttacttcactatcgaactacatattatt |
218 |
Q |
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| T |
31810517 |
tgatgaatcgttcagaagaatccaaattcgatttctgagtgaaatagttatcgatcagactatatttacttcactatcgaactacatattatt |
31810609 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 31810304 - 31810333
Alignment:
| Q |
1 |
aaatcatttaatttgtgatcgtgcctatgt |
30 |
Q |
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| T |
31810304 |
aaatcatttaatttgtgatcgtgcctatgt |
31810333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 1106461 - 1106509
Alignment:
| Q |
33 |
aatatttgattttaatcttttaaaataaagactaaaatgtatattataa |
81 |
Q |
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| T |
1106461 |
aatatttgattttagtctcttaaaataatgaataaaatgaatattataa |
1106509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 33932704 - 33932752
Alignment:
| Q |
33 |
aatatttgattttaatcttttaaaataaagactaaaatgtatattataa |
81 |
Q |
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| T |
33932704 |
aatatttgattttagtctctttaaataaagactaaaatggatattataa |
33932752 |
T |
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Target: scaffold0012 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 122754 - 122696
Alignment:
| Q |
26 |
tatgtgaaatatttgattttaatcttttaaaataaagactaaaatgtatattataaagaa |
85 |
Q |
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||||| |||||||||||||||| | ||||||||| ||||||||||||||||| |||||| |
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| T |
122754 |
tatgtcaaatatttgattttaa-cacttaaaataaggactaaaatgtatattaaaaagaa |
122696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 213101 - 213043
Alignment:
| Q |
26 |
tatgtgaaatatttgattttaatcttttaaaataaagactaaaatgtatattataaagaa |
85 |
Q |
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||||| |||||||||||||||| | ||||||||| ||||||||||||||||| |||||| |
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| T |
213101 |
tatgtcaaatatttgattttaa-cacttaaaataaggactaaaatgtatattaaaaagaa |
213043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 23177256 - 23177209
Alignment:
| Q |
33 |
aatatttgattttaatcttttaaaataaagactaaaatgtatattata |
80 |
Q |
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||||||||||||||||| ||||||||| |||||||||| |||||||| |
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| T |
23177256 |
aatatttgattttaatcccttaaaataaggactaaaatgaatattata |
23177209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 25384361 - 25384412
Alignment:
| Q |
27 |
atgtgaaatatttgattttaatcttttaaaataaagactaaaatgtatatta |
78 |
Q |
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|||| |||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
25384361 |
atgtaaaatatttgattttaatccctcgaaataaagactaaaatgtatatta |
25384412 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 6869107 - 6869145
Alignment:
| Q |
33 |
aatatttgattttaatcttttaaaataaagactaaaatg |
71 |
Q |
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||||||| ||||| ||||||||||||||||||||||||| |
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| T |
6869107 |
aatatttaatttttatcttttaaaataaagactaaaatg |
6869145 |
T |
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