View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_150 (Length: 216)

Name: NF18993_low_150
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_150
NF18993_low_150
[»] chr5 (28 HSPs)
chr5 (21-197)||(8456916-8457092)
chr5 (39-198)||(38397616-38397774)
chr5 (42-197)||(6257363-6257517)
chr5 (39-197)||(37168986-37169143)
chr5 (42-197)||(39862440-39862594)
chr5 (39-197)||(23218503-23218660)
chr5 (21-197)||(10081144-10081322)
chr5 (39-197)||(16618523-16618680)
chr5 (39-197)||(15631631-15631789)
chr5 (21-145)||(614397-614521)
chr5 (26-159)||(9737972-9738107)
chr5 (21-164)||(11856294-11856437)
chr5 (21-194)||(25560284-25560456)
chr5 (21-150)||(36769074-36769202)
chr5 (21-197)||(42119621-42119797)
chr5 (21-195)||(29491369-29491541)
chr5 (35-159)||(3341111-3341234)
chr5 (35-148)||(27916153-27916266)
chr5 (21-150)||(6174744-6174874)
chr5 (47-163)||(10115185-10115301)
chr5 (24-164)||(33271256-33271395)
chr5 (38-159)||(29790210-29790329)
chr5 (44-161)||(10052489-10052606)
chr5 (37-136)||(15475408-15475507)
chr5 (116-170)||(2676501-2676555)
chr5 (21-83)||(10052599-10052661)
chr5 (21-92)||(22903256-22903329)
chr5 (62-114)||(19322058-19322110)
[»] chr1 (29 HSPs)
chr1 (21-197)||(38859850-38860026)
chr1 (39-197)||(48392359-48392516)
chr1 (39-197)||(42517247-42517408)
chr1 (39-195)||(5975006-5975161)
chr1 (39-197)||(7742732-7742889)
chr1 (39-197)||(49902486-49902643)
chr1 (21-197)||(47022703-47022877)
chr1 (39-197)||(10155969-10156126)
chr1 (39-197)||(3346804-3346961)
chr1 (21-163)||(10907635-10907777)
chr1 (39-197)||(23908303-23908450)
chr1 (21-112)||(30252783-30252874)
chr1 (21-145)||(26835337-26835461)
chr1 (39-197)||(29149511-29149658)
chr1 (35-150)||(30745357-30745472)
chr1 (35-150)||(30766808-30766923)
chr1 (21-162)||(44107379-44107517)
chr1 (21-145)||(5558309-5558431)
chr1 (21-150)||(42456570-42456700)
chr1 (26-144)||(14796880-14796998)
chr1 (26-144)||(14805754-14805872)
chr1 (35-143)||(13131910-13132017)
chr1 (26-164)||(26511620-26511756)
chr1 (86-166)||(37189704-37189783)
chr1 (26-83)||(37189307-37189364)
chr1 (37-150)||(45968683-45968795)
chr1 (35-83)||(8430508-8430556)
chr1 (21-68)||(1106775-1106822)
chr1 (21-71)||(44462560-44462610)
[»] chr2 (22 HSPs)
chr2 (39-197)||(42769711-42769868)
chr2 (39-197)||(14941997-14942154)
chr2 (39-197)||(29846460-29846617)
chr2 (39-197)||(40277241-40277398)
chr2 (39-197)||(19181566-19181723)
chr2 (39-197)||(14186391-14186548)
chr2 (21-197)||(3956571-3956747)
chr2 (21-145)||(6318463-6318588)
chr2 (27-148)||(33009677-33009799)
chr2 (21-150)||(14539704-14539833)
chr2 (21-125)||(1387313-1387416)
chr2 (21-145)||(2888040-2888164)
chr2 (111-197)||(3597843-3597929)
chr2 (21-114)||(23685406-23685499)
chr2 (21-145)||(40780054-40780179)
chr2 (21-140)||(41674716-41674836)
chr2 (21-164)||(28321689-28321832)
chr2 (36-150)||(43139760-43139875)
chr2 (21-98)||(32486243-32486320)
chr2 (21-95)||(25665223-25665297)
chr2 (122-197)||(1386115-1386190)
chr2 (43-103)||(3597914-3597973)
[»] chr4 (29 HSPs)
chr4 (21-197)||(17888503-17888679)
chr4 (39-197)||(1535789-1535946)
chr4 (21-197)||(31377389-31377564)
chr4 (21-197)||(35018937-35019110)
chr4 (39-195)||(49284375-49284530)
chr4 (26-197)||(20818571-20818742)
chr4 (21-197)||(11054452-11054630)
chr4 (44-197)||(16338166-16338318)
chr4 (39-197)||(36012139-36012295)
chr4 (39-197)||(37801217-37801374)
chr4 (39-163)||(34241011-34241134)
chr4 (39-163)||(25954768-25954891)
chr4 (21-164)||(46473993-46474136)
chr4 (26-185)||(9742496-9742657)
chr4 (39-193)||(46583508-46583651)
chr4 (36-185)||(322509-322663)
chr4 (36-181)||(12792200-12792345)
chr4 (91-195)||(36851342-36851446)
chr4 (39-194)||(52632536-52632680)
chr4 (21-164)||(50328795-50328938)
chr4 (48-150)||(10094393-10094495)
chr4 (33-149)||(54090191-54090307)
chr4 (27-150)||(35322704-35322827)
chr4 (66-148)||(47084056-47084138)
chr4 (37-145)||(19124743-19124851)
chr4 (31-83)||(24991962-24992014)
chr4 (58-114)||(5780790-5780846)
chr4 (21-148)||(33982001-33982130)
chr4 (39-83)||(16338311-16338354)
[»] chr3 (30 HSPs)
chr3 (21-197)||(8950457-8950631)
chr3 (39-197)||(21853215-21853372)
chr3 (21-197)||(1781761-1781937)
chr3 (26-197)||(20382523-20382692)
chr3 (39-197)||(13856117-13856274)
chr3 (39-197)||(44994921-44995079)
chr3 (39-197)||(40845870-40846027)
chr3 (21-197)||(36539631-36539807)
chr3 (33-197)||(43347289-43347453)
chr3 (39-197)||(5391475-5391632)
chr3 (36-163)||(10839367-10839494)
chr3 (21-164)||(8926765-8926909)
chr3 (21-160)||(3178703-3178841)
chr3 (39-170)||(32352865-32352995)
chr3 (18-145)||(54546901-54547027)
chr3 (21-162)||(19649360-19649502)
chr3 (39-125)||(23467519-23467604)
chr3 (22-150)||(22845362-22845488)
chr3 (21-145)||(33103743-33103866)
chr3 (21-137)||(48206853-48206968)
chr3 (33-120)||(47889736-47889824)
chr3 (18-150)||(19644327-19644461)
chr3 (29-150)||(46685784-46685903)
chr3 (36-152)||(51336224-51336339)
chr3 (21-148)||(6280361-6280487)
chr3 (85-149)||(27642723-27642787)
chr3 (36-114)||(791831-791906)
chr3 (21-84)||(36826020-36826083)
chr3 (21-112)||(47315142-47315233)
chr3 (65-145)||(50663177-50663257)
[»] chr7 (24 HSPs)
chr7 (39-197)||(34707134-34707291)
chr7 (39-197)||(10576691-10576848)
chr7 (39-197)||(34259536-34259693)
chr7 (39-197)||(44164696-44164853)
chr7 (39-197)||(29238096-29238253)
chr7 (39-197)||(29981066-29981223)
chr7 (21-166)||(10334177-10334322)
chr7 (33-197)||(19334513-19334678)
chr7 (39-197)||(29555892-29556049)
chr7 (39-163)||(24320426-24320549)
chr7 (37-163)||(33057644-33057770)
chr7 (21-163)||(17303101-17303244)
chr7 (39-153)||(32876527-32876640)
chr7 (44-192)||(9770682-9770830)
chr7 (21-145)||(26284383-26284506)
chr7 (66-145)||(15017817-15017896)
chr7 (21-83)||(2702287-2702349)
chr7 (21-145)||(43342420-43342533)
chr7 (128-194)||(2702188-2702254)
chr7 (37-83)||(23032192-23032238)
chr7 (21-114)||(41853132-41853226)
chr7 (128-170)||(41853217-41853259)
chr7 (21-62)||(25128163-25128204)
chr7 (90-150)||(23032104-23032164)
[»] chr8 (21 HSPs)
chr8 (33-197)||(35806806-35806969)
chr8 (39-197)||(22324614-22324771)
chr8 (36-197)||(42072443-42072603)
chr8 (39-197)||(26021413-26021572)
chr8 (39-197)||(21525376-21525533)
chr8 (39-197)||(33934322-33934479)
chr8 (39-197)||(42013890-42014047)
chr8 (21-197)||(10112046-10112222)
chr8 (36-159)||(24065288-24065410)
chr8 (71-186)||(16523155-16523270)
chr8 (21-150)||(19334783-19334911)
chr8 (37-149)||(43282852-43282964)
chr8 (21-112)||(34697427-34697518)
chr8 (21-184)||(16818939-16819104)
chr8 (37-187)||(21488082-21488231)
chr8 (76-148)||(16591377-16591449)
chr8 (66-145)||(2271239-2271318)
chr8 (36-147)||(2824185-2824295)
chr8 (33-83)||(23756547-23756599)
chr8 (21-77)||(16523069-16523125)
chr8 (21-53)||(16591440-16591472)
[»] chr6 (17 HSPs)
chr6 (39-197)||(9231807-9231964)
chr6 (39-197)||(24694604-24694761)
chr6 (39-197)||(13627558-13627715)
chr6 (39-197)||(14309752-14309908)
chr6 (21-197)||(28750603-28750779)
chr6 (26-159)||(13103109-13103242)
chr6 (47-170)||(1727913-1728035)
chr6 (21-145)||(34103685-34103808)
chr6 (37-116)||(11212687-11212765)
chr6 (37-116)||(11279556-11279634)
chr6 (36-150)||(27863714-27863828)
chr6 (21-85)||(24500765-24500829)
chr6 (100-197)||(11084668-11084764)
chr6 (78-198)||(24497526-24497646)
chr6 (123-197)||(34383364-34383438)
chr6 (37-83)||(7517031-7517077)
chr6 (39-72)||(11084628-11084661)
[»] scaffold0079 (2 HSPs)
scaffold0079 (44-197)||(54542-54694)
scaffold0079 (39-83)||(54506-54549)
[»] scaffold0045 (1 HSPs)
scaffold0045 (27-145)||(34457-34575)
[»] scaffold0086 (1 HSPs)
scaffold0086 (65-145)||(20836-20916)
[»] scaffold0016 (2 HSPs)
scaffold0016 (21-61)||(85510-85550)
scaffold0016 (74-114)||(85552-85592)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 1e-64; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 8457092 - 8456916
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  8457092 aacatatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattcatagg 8456993  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||| |||||||||||| ||||||||||| || ||||||||||||||||  |||||||||||||| ||||||||||    
T  8456992 gatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcatggggtcgccgggccatagaaccgcc 8456916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 39 - 198
Target Start/End: Original strand, 38397616 - 38397774
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  38397616 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 38397714  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcct 198  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  38397715 caaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcct 38397774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 42 - 197
Target Start/End: Complemental strand, 6257517 - 6257363
Alignment:
Q  42 ataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaa 141  Q
    ||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||| ||||| |||||||||||||||| || ||||||||||||    
T  6257517 ataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttgtataagaaattcatagggatttacacaagaaattgcaa 6257419  T
Q  142 aaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  6257418 aaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcc 6257363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 37169143 - 37168986
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || || ||||||    
T  37169143 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattg 37169045  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||    
T  37169044 caaaaaatttggcccggagcccgggcaagtgcccggggtcgccgggccttagaaccgcc 37168986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 42 - 197
Target Start/End: Complemental strand, 39862594 - 39862440
Alignment:
Q  42 ataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaa 141  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| |||| || ||||||||||||    
T  39862594 ataagaaattgcaagcaaataat-aaaaaatctaaagaaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattgcaa 39862496  T
Q  142 aaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    |||| ||||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  39862495 aaaaattggcccggagctcgggcgagtgcccggggtcgccgggccttagaaccgcc 39862440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 23218503 - 23218660
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  23218503 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 23218601  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    |||||| |||||||| || ||||||||||||| |||| |||||||||||||||||||||    
T  23218602 caaaaactttggcccggaacccgggcgagtgcccgggatcgccgggccttagaaccgcc 23218660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 10081144 - 10081322
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| | ||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| ||||||||| |||||||||||    
T  10081144 aacacatttataggagtttacataagaaattgtaagcaaataataaaaaaatctaaagaaattgcccaatttataggggtttatataagaaattcatagg 10081243  T
Q  121 gatttgcataagaaattg--caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||| ||||||||||||   |||||| |||| |||||||||||||||||||  ||| |||||||||| ||||||||||    
T  10081244 gatttacataagaaattgaaaaaaaaaattgggccagagcccgggcgagtgcctgggatcgccgggccatagaaccgcc 10081322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 16618680 - 16618523
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||| |||||  ||||||||||||  ||||||||| |||||||||||||||| || |||||||||    
T  16618680 tacataagaaattgcaagcaaataat-aaaaaatataaaaaaattgtccaatttataggagtttatataagaaattcatagggatttacacaagaaattg 16618582  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
     |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||    
T  16618581 taaaaaatttggcccggagcccggacgagtgcccggggtcgccgggccttagaaccgcc 16618523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 15631631 - 15631789
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttataggga-tttatataaaaaattcatagggatttgcataagaaatt 137  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||  |||||||||||||  ||||||||| ||||||||||||||||  | ||||||||    
T  15631631 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttatagggggtttatataagaaattcatagggatttatacaagaaatt 15631729  T
Q  138 gcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    | |||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||    
T  15631730 gtaaaaaatttggcctggagcccgggcgagtgcccggggtcgccgggccttagaaccgcc 15631789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 614521 - 614397
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||| |||    
T  614521 aacacatttataggtgtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgccaaatttatagggatttatataaaaaattcagagg 614422  T
Q  121 gatttgcataagaaattgcaaaaaa 145  Q
     |||| |||||||||||||||||||    
T  614421 aatttacataagaaattgcaaaaaa 614397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 9738107 - 9737972
Alignment:
Q  26 atttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcataggga--t 123  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||  |    
T  9738107 atttataggggtttacataagaaattgcaagcaaataaacaaaaaatctaaagaaattgtccaatttatagggatttatataagaaattcatagggattt 9738008  T
Q  124 ttgcataagaaattgcaaaaaatttggcccagagcc 159  Q
    || |||||||||||| |||||| ||||  |||||||    
T  9738007 ttacataagaaattgaaaaaaaattgggtcagagcc 9737972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 11856294 - 11856437
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||     
T  11856294 aacatatttataggagtttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatataagaaattcagagc 11856393  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggc 164  Q
    ||||| ||||||||||| || |||| |||| ||  |||||||||    
T  11856394 gatttacataagaaattacagaaaacttgggccgaagcccgggc 11856437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 25560456 - 25560284
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||  |||||||||||   ||||||||| ||||| ||| |    
T  25560456 aacacatttatatgggtttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatataagaaatttataag 25560357  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaacc 194  Q
    ||||| |||||||||||| |||||| |||  || |||||||| ||||||  |||||| |||||||| |||||||    
T  25560356 gatttacataagaaattg-aaaaaaattgagccggagcccggacgagtggccggggttgccgggccatagaacc 25560284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 36769202 - 36769074
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| || |||| |||| | ||||||||| ||||||| |||    
T  36769202 aacacatttataggggtttacatatgaaattgcaagcaaataatcaaaaa-tctaaagaaattgcctaattcatagaggtttatataagaaattcagagg 36769104  T
Q  121 gatttgcataagaaattgcaaaaaatttgg 150  Q
     |||| ||||||||||||||||||||||||    
T  36769103 aatttacataagaaattgcaaaaaatttgg 36769074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 42119621 - 42119797
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||  ||||||||||| | ||||||||| ||||||| |||    
T  42119621 aacacatttataggggtttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatttatagaggtttatataagaaattcagagg 42119720  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
     |||| ||||||||||| ||||||||| ||   ||||||||| ||| ||| | || ||||||| ||||  |||||||    
T  42119721 aatttacataagaaattacaaaaaattcgggttagagcccggacgactgccccggctcgccggaccttcaaaccgcc 42119797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 29491541 - 29491369
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| | |||| |||||||||||||||||||||||||||||||| ||||| ||||  |||||||||||||  |||||||| ||||||||||     
T  29491541 aacacatttatatgtgtttgcataagaaattgcaagcaaataatcaaaaaatttaaag-aattgtccaatttataggg-gttatataagaaattcataga 29491444  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccg 195  Q
     |||| ||||||||||||||||| |||||| |   ||||||| ||||||  ||||||||||||||| | ||||||    
T  29491443 aatttacataagaaattgcaaaagatttgggctgaagcccggacgagtgtccggggtcgccgggccatcgaaccg 29491369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 35 - 159
Target Start/End: Complemental strand, 3341234 - 3341111
Alignment:
Q  35 ggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataa-aaaattcatagggatttgcataaga 133  Q
    ||||||||||| |||||| |||||||||||||||||  ||||||||||||||||||||||||||  |||||||| |||||||| | | |||| |||||||    
T  3341234 ggtttacataaaaaattgaaagcaaataatcaaaaag-ctaaagaaatttcccaatttataggggattatataaaaaaattcaga-gaatttacataaga 3341137  T
Q  134 aattgcaaaaaatttggcccagagcc 159  Q
    ||||||||||||||||| ||||||||    
T  3341136 aattgcaaaaaatttgggccagagcc 3341111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 27916153 - 27916266
Alignment:
Q  35 ggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaa 134  Q
    |||||| |||||||||||||| |||||||| ||||||||||| |||||| | |||||||||||  ||||||||| ||||||| ||| |||| ||||||||    
T  27916153 ggtttatataagaaattgcaaacaaataataaaaaaatctaatgaaattgctcaatttataggagtttatataagaaattcagaggaatttacataagaa 27916252  T
Q  135 attgcaaaaaattt 148  Q
    ||||||||||||||    
T  27916253 attgcaaaaaattt 27916266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 6174744 - 6174874
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttata--gggatttatataaaaaattcata 118  Q
    |||||||||||  ||||||||||| ||||||||||||||||||| ||||||| ||||||||||  ||||||||||  ||| ||||||||| ||||||| |    
T  6174744 aacatatttatgggggtttacataggaaattgcaagcaaataat-aaaaaatataaagaaattgtccaatttataggggggtttatataagaaattcaga 6174842  T
Q  119 gggatttgcataagaaattgcaaaaaatttgg 150  Q
     | |||| | ||||||||| ||||||||||||    
T  6174843 agaatttacgtaagaaattacaaaaaatttgg 6174874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 10115185 - 10115301
Alignment:
Q  47 aaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaaaat 146  Q
    |||||||||||||||||| ||||||||||||||||||  | ||||||| ||| ||||||||| |||| || ||| |||| ||||| |||||||||||||     
T  10115185 aaattgcaagcaaataattaaaaaatctaaagaaattgtctaatttattggggtttatataagaaatccagaggaatttacataaaaaattgcaaaaaaa 10115284  T
Q  147 ttggcccagagcccggg 163  Q
    |||| || |||||||||    
T  10115285 ttgggccggagcccggg 10115301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 33271395 - 33271256
Alignment:
Q  24 atatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggat 123  Q
    ||||||||| ||||||| |||||||||| ||| |||||||| ||||||| ||||||||||  ||||||||||| | ||||||||| |||||||  || ||    
T  33271395 atatttataggggtttatataagaaattacaaacaaataat-aaaaaatataaagaaattgtccaatttatagaggtttatataagaaattcaacggaat 33271297  T
Q  124 ttgcataagaaattgcaaaaaatttggcccagagcccgggc 164  Q
    || |||||||||||| |||||| |||| || ||| ||||||    
T  33271296 ttacataagaaattgtaaaaaaattgggccggagtccgggc 33271256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 29790329 - 29790210
Alignment:
Q  38 ttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaatt 137  Q
    ||||||||||||||  |||||||||||||||||  ||||||||||| |||||||||||  | ||||||||| ||||||||| | |||| |||||||||||    
T  29790329 ttacataagaaattaaaagcaaataatcaaaaa--ctaaagaaattgcccaatttataaaggtttatataagaaattcataagaatttacataagaaatt 29790232  T
Q  138 gcaaaaaatttggcccagagcc 159  Q
    | ||||| |||||  |||||||    
T  29790231 gtaaaaattttgggtcagagcc 29790210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 10052606 - 10052489
Alignment:
Q  44 aagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaa 143  Q
    |||||||||||||||||||||| |||| | |||||||||| || |||||||||   |||||||||  | |||| |||||||| |||||||||||| ||||    
T  10052606 aagaaattgcaagcaaataatctaaaattttaaagaaattacctaatttatagacgtttatataagtagttcagagggatttacataagaaattgtaaaa 10052507  T
Q  144 aatttggcccagagcccg 161  Q
    || |||| || |||||||    
T  10052506 aaattgggccggagcccg 10052489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 15475507 - 15475408
Alignment:
Q  37 tttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaat 136  Q
    ||||||||||||||| | || |||||||  |||||| |||||||||||  |||||||||  ||||||||||||||||| | ||  |||| ||||||||||    
T  15475507 tttacataagaaattacgagaaaataatacaaaaatttaaagaaatttttcaatttatatagatttatataaaaaattaagagaaatttacataagaaat 15475408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 2676555 - 2676501
Alignment:
Q  116 atagggatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgc 170  Q
    |||||| ||| |||||||||||| |||||| |||| |||||||||||||||||||    
T  2676555 ataggggtttacataagaaattgaaaaaaaattggaccagagcccgggcgagtgc 2676501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 10052661 - 10052599
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatt 83  Q
    |||||||||||| |  ||||||||||||||||||||||||||||  |||| | ||||||||||    
T  10052661 aacatatttataggcttttacataagaaattgcaagcaaataatttaaaattttaaagaaatt 10052599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 22903256 - 22903329
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagc--aaataatcaaaaaatctaaagaaatttcccaattt 92  Q
    |||| |||||||  |||||||||||||||||||||||  ||| ||| |||||| ||||||||||| ||||||||    
T  22903256 aacacatttatagaggtttacataagaaattgcaagcaaaaagaataaaaaaaactaaagaaattgcccaattt 22903329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 19322110 - 19322058
Alignment:
Q  62 aatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaatt 114  Q
    ||||||||||||||||| |||| |||||||||||||  ||||||||| |||||    
T  19322110 aatcaaaaaatctaaagtaattgcccaatttataggagtttatataagaaatt 19322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 38859850 - 38860026
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||| ||||||||| |||||||||||    
T  38859850 aacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaaaaaattgcccaatttataggggtttatataagaaattcatagg 38859949  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
     |||| |||||||||||| ||||||||||| || |||||||||||||||| ||||||||||||||| ||||||||||    
T  38859950 aatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgccgggccatagaaccgcc 38860026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 48392516 - 48392359
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||||||||||| |||||||||||||||| || |||||||||    
T  48392516 tacataagaaattgcaagcaaataat-aaaaaatgtaatgaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaattg 48392418  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||| ||||| | |||||||||||||||| || |||||||||||||||||||||||    
T  48392417 caaaaaaattggctcggagcccgggcgagtgcccgaggtcgccgggccttagaaccgcc 48392359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 42517408 - 42517247
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttataggg----atttatataaaaaattcatagggatttgcataagaa 134  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||     ||||||||| |||||||||||||||| || |||||    
T  42517408 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttgtttatataagaaattcatagggatttacacaagaa 42517310  T
Q  135 attgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  42517309 attgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcc 42517247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 39 - 195
Target Start/End: Original strand, 5975006 - 5975161
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||||| ||||||||| |||||| ||||||||| || |||||||||    
T  5975006 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcttagggatttacacaagaaattg 5975104  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccg 195  Q
     |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  5975105 aaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccg 5975161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 7742889 - 7742732
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| ||||||||| |||||| || |||||||||    
T  7742889 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcataaggatttacacaagaaattg 7742791  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||| || || | |||||||||||||||| ||||||||||||||||||||||||||    
T  7742790 caaaaaaatttgctcggagcccgggcgagtgcccggggtcgccgggccttagaaccgcc 7742732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 49902486 - 49902643
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  49902486 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgccctatttataggggtttatataagaaattcatagggatttacacaagaaattg 49902584  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| ||||||| |||||||| ||| |||||||| |||||||||||||    
T  49902585 caaaaaatttggcccggagcccgagcgagtgcccggagtcgccggaccttagaaccgcc 49902643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 47022703 - 47022877
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||||||||||| |||  ||||||||||||| |||| ||||||| ||||||| |||||||||| || ||||||||||  ||||||||| ||||||||||     
T  47022703 aacatatttata-gggcgtacataagaaattacaagtaaataat-aaaaaatataaagaaattgcctaatttataggagtttatataagaaattcataga 47022800  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  47022801 gatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcc 47022877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 10156126 - 10155969
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||  |||||||||||   ||||||||| ||||||||||| |||| || |||||||||    
T  10156126 tacataagaaattgcaagcaaataat-aaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcataggaatttacacaagaaattg 10156028  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  10156027 caaaaaaattggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcc 10155969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 3346804 - 3346961
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||||| ||||||||| |||||||||||||||| || || ||||||    
T  3346804 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaacaaattg 3346902  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    |||||||||||||||  ||| ||||||||||| |||| |||| || |||||||| ||||    
T  3346903 caaaaaatttggcccgaagctcgggcgagtgcccgggatcgctggaccttagaatcgcc 3346961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 10907777 - 10907635
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| | || |||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||| ||||||||| ||||||| |||    
T  10907777 aacacatttataggtgtctacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgtctgatttataggggtttatataagaaattcagagg 10907678  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccggg 163  Q
     |||| |||||||||||||||||||||||| || |||||||||    
T  10907677 aatttacataagaaattgcaaaaaatttgggccggagcccggg 10907635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 23908303 - 23908450
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||  ||||||||||||||||||||||| ||||||||||| |||| ||              
T  23908303 tacataagaaattgcaagcaaataat-aaaaaacataaagaaattgtccaatttatagggatttatataagaaattcataggaatttaca---------- 23908391  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  23908392 caaaaaatttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcc 23908450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 30252874 - 30252783
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaa 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||||    
T  30252874 aacatatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaagttgtctaatttatagggatttatataaaaaa 30252783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 26835337 - 26835461
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||   |||||||||||  ||||||||| ||||||||| |    
T  26835337 aacacatttatatgggtttacatgagaaattgcaagcaaataatcaaaaaatctaaaaaaattgttcaatttataggagtttatataagaaattcatatg 26835436  T
Q  121 gatttgcataagaaattgcaaaaaa 145  Q
     |||| ||||| |||||||||||||    
T  26835437 aatttacataataaattgcaaaaaa 26835461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 29149658 - 29149511
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||  |||||||||| |||||||||||||| ||||||||| |||||||||||||||| ||              
T  29149658 tacataagaaattgcaagcaaataat-aaaaaacgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca---------- 29149570  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    |||||||||||| || ||||||||||||||||  ||||||||| ||||||| |||||||    
T  29149569 caaaaaatttggtccggagcccgggcgagtgcctggggtcgccaggccttaaaaccgcc 29149511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 30745357 - 30745472
Alignment:
Q  35 ggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaa 134  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||  |||||||||||||||||||| || ||||||| ||  |||| ||||| ||    
T  30745357 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaa 30745456  T
Q  135 attgcaaaaaatttgg 150  Q
    ||||||||| ||||||    
T  30745457 attgcaaaatatttgg 30745472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 30766808 - 30766923
Alignment:
Q  35 ggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaa 134  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||  |||||||||||||||||||| || ||||||| ||  |||| ||||| ||    
T  30766808 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaa 30766907  T
Q  135 attgcaaaaaatttgg 150  Q
    ||||||||| ||||||    
T  30766908 attgcaaaatatttgg 30766923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 44107517 - 44107379
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||    ||||||||||| ||||||||||||| ||| |||    
T  44107517 aacacatttataaggttttacataagaaattgcaagtaaataatcaaaaaatctgaagaaattaattaatttataggggtttatataaaaaaatcagagg 44107418  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgg 162  Q
     |||| ||||||||   |||||||| |||| || ||||||||    
T  44107417 aatttacataagaa---gcaaaaaaattggaccggagcccgg 44107379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 5558309 - 5558431
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||||||||||| | ||||| ||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||| ||||||||| ||||||  | |    
T  5558309 aacatatttataggagtttatatatgaaattgcaagcaaataatc-aaaaatctaaagaaattgtccaatttataggggtttatataagaaattcggaag 5558407  T
Q  121 gatttgcataagaaattgcaaaaaa 145  Q
    | ||| |||||||||||||||||||    
T  5558408 g-tttacataagaaattgcaaaaaa 5558431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 42456570 - 42456700
Alignment:
Q  21 aacatatttataaggg-tttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatag 119  Q
    |||| ||||||| ||| |||||||||||||||||||| | ||||| ||    | |||||||||| |||||||||||||| ||||||||| ||||||||||    
T  42456570 aacacatttataggggatttacataagaaattgcaagtagataataaatttttttaaagaaattgcccaatttataggggtttatataagaaattcatag 42456669  T
Q  120 ggatttgcataagaaattgcaaaaaatttgg 150  Q
    | |||| |||||||||| |||||||||||||    
T  42456670 gaatttacataagaaatagcaaaaaatttgg 42456700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 26 - 144
Target Start/End: Original strand, 14796880 - 14796998
Alignment:
Q  26 atttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggattt 125  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||||||||| |||  || |||||||| |  | ||||||| ||||||| ||| ||||    
T  14796880 atttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattcagaggaattt 14796979  T
Q  126 gcataagaaattgcaaaaa 144  Q
     ||||| ||||||||||||    
T  14796980 acataaaaaattgcaaaaa 14796998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 26 - 144
Target Start/End: Original strand, 14805754 - 14805872
Alignment:
Q  26 atttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggattt 125  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||||||||| |||  || |||||||| |  | ||||||| ||||||| ||| ||||    
T  14805754 atttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattcagaggaattt 14805853  T
Q  126 gcataagaaattgcaaaaa 144  Q
     ||||| ||||||||||||    
T  14805854 acataaaaaattgcaaaaa 14805872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 13131910 - 13132017
Alignment:
Q  35 ggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaa 134  Q
    |||||||||||||||||||||| | ||||  |||||  |||||||||||  ||||||||||| ||||||||||||||||| | ||| |||| ||||||||    
T  13131910 ggtttacataagaaattgcaaggagataagtaaaaag-ctaaagaaattgtccaatttatagtgatttatataaaaaatttagaggaatttacataagaa 13132008  T
Q  135 attgcaaaa 143  Q
    ||| |||||    
T  13132009 attacaaaa 13132017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 26511756 - 26511620
Alignment:
Q  26 atttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggattt 125  Q
    ||||||| || ||||| |||||||||| ||| ||||||||| ||||| ||||||||||   ||||||| ||| |||||||||| |||||||  ||| |||    
T  26511756 atttatagggatttacgtaagaaattgtaagtaaataatca-aaaatttaaagaaattattcaatttacaggaatttatataagaaattca-gggggttt 26511659  T
Q  126 gcataagaaattgcaaaaaatttggcccagagcccgggc 164  Q
     ||||||||||||||||||| || | || ||||||||||    
T  26511658 acataagaaattgcaaaaaaattaggccggagcccgggc 26511620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 37189704 - 37189783
Alignment:
Q  86 ccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaaaatttggcccagagcccgggcga 166  Q
    ||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||| |||||||||| || ||| ||||||||    
T  37189704 ccaatttatagagatttatataagaaattcatagagatttacataagaaattgc-aaaaatttgggccggagtccgggcga 37189783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 37189307 - 37189364
Alignment:
Q  26 atttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatt 83  Q
    |||||||  ||||||||||||||||||||| |||||||||||||||| |||| |||||    
T  37189307 atttatagaggtttacataagaaattgcaaacaaataatcaaaaaatttaaataaatt 37189364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 150
Target Start/End: Original strand, 45968683 - 45968795
Alignment:
Q  37 tttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaat 136  Q
    |||||||||||||||||||| |||||||| ||||||||| | |||||  |||||||||| |   ||||||||||||||||   | | || ||||| | ||    
T  45968683 tttacataagaaattgcaagtaaataatc-aaaaatctataaaaattgtccaatttataagagattatataaaaaattcaggagaacttacataaaatat 45968781  T
Q  137 tgcaaaaaatttgg 150  Q
    ||||||||||||||    
T  45968782 tgcaaaaaatttgg 45968795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 8430556 - 8430508
Alignment:
Q  35 ggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatt 83  Q
    |||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  8430556 ggttaacataagaaattgcaagcaaataataaaaaaatttaaagaaatt 8430508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 1106775 - 1106822
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaa 68  Q
    |||| |||||||||  ||||||||||||||||||||||||||||||||    
T  1106775 aacacatttataagaatttacataagaaattgcaagcaaataatcaaa 1106822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 44462610 - 44462560
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaa 71  Q
    ||||||||| || ||||||| |||||||| |||||| ||||||||||||||    
T  44462610 aacatatttttaggggtttatataagaaactgcaagtaaataatcaaaaaa 44462560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 42769868 - 42769711
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  42769868 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 42769770  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  42769769 caaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcc 42769711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 14942154 - 14941997
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  14942154 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 14942056  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||||    
T  14942055 caaaaaatttggcccggagcccgggcgagtgtccggggtcgccgagccttagaaccgcc 14941997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 29846460 - 29846617
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  29846460 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 29846558  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||    
T  29846559 caaaaaatttggcccggagcccgggcgagtgcccggggtcgtcgggccttagaaccgcc 29846617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 40277398 - 40277241
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||    
T  40277398 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatttatagggatttacataaaaaattg 40277300  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| |||||||| | ||||| ||||||||||||||||||||||||||    
T  40277299 caaaaaatttggcccggagcccggacaagtgcccggggtcgccgggccttagaaccgcc 40277241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 19181566 - 19181723
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| ||||||||||| |||| || |||||||||    
T  19181566 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattg 19181664  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    |||||||||||||||| ||||| ||||||||  ||||||||||||||||||||||||||    
T  19181665 caaaaaatttggcccatagcccaggcgagtgtccggggtcgccgggccttagaaccgcc 19181723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 14186548 - 14186391
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||| | |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || ||||||||     
T  14186548 tacataagaaattgcaagcaaataat-aaaaagtgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaatta 14186450  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| |||| |||||||||||  |||||||||||||||||||||||||    
T  14186449 caaaaaatttggcccggagctcgggcgagtgcctggggtcgccgggccttagaaccgcc 14186391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 3956571 - 3956747
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| |||||||  |||||||||  ||||||||||||||||||| ||||| | ||||||||||  |||||||| |||| ||||||||| |||||||||||    
T  3956571 aacacatttatagaggtttacatttgaaattgcaagcaaataataaaaaattttaaagaaattgtccaatttacaggggtttatataataaattcatagg 3956670  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||| ||||| |||||| |||   ||||| || |||||||||||||||| ||||||| ||||||| ||||||||||    
T  3956671 gatttacataaaaaattgaaaattttttgggccggagcccgggcgagtgcccggggtcaccgggccatagaaccgcc 3956747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 6318588 - 6318463
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaa-tctaaagaaatttcccaatttatagggatttatataaaaaattcatag 119  Q
    |||| ||||||| ||| ||||||  ||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| ||||||||||    
T  6318588 aacacatttataggggcttacatttgaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttatagggatttatataagaaattcatag 6318489  T
Q  120 ggatttgcataagaaattgcaaaaaa 145  Q
    |||||| |||||||||||| ||||||    
T  6318488 ggatttacataagaaattgaaaaaaa 6318463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 33009677 - 33009799
Alignment:
Q  27 tttataagggtttacataagaaattgcaagcaaataatca-aaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggattt 125  Q
    |||||| |||||||||||| |||||||||||||||||| | |||||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||    
T  33009677 tttatatgggtttacataaaaaattgcaagcaaataataataaaaatctaaagaaattgtccaatttataaggatttatataacaaattcatagggattt 33009776  T
Q  126 gcataagaaattgcaaaaaattt 148  Q
      ||||||||||| |||||||||    
T  33009777 atataagaaattgtaaaaaattt 33009799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 14539833 - 14539704
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| | ||||| ||||||||||||||| ||||||| |||||||||||||||||| || |||||||||| |||||||||| ||||||| |||    
T  14539833 aacacatttataggtgtttatataagaaattgcaagaaaataataaaaaaatctaaagaaattgcctaatttataggaatttatataagaaattcagagg 14539734  T
Q  121 gatttgcataagaaattgcaaaaaatttgg 150  Q
     | || ||||||||||||||||||||||||    
T  14539733 aaattacataagaaattgcaaaaaatttgg 14539704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 1387416 - 1387313
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||    
T  1387416 aacacatttgtaagggtttacataagaaattgcaagcaaataat-aaaaaatctaaagaaattacccaatttataggggtttatctaagaaattcatagg 1387318  T
Q  121 gattt 125  Q
    |||||    
T  1387317 gattt 1387313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 2888040 - 2888164
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||||||||||| ||||||||||||||  |||| ||||| |||| |||||||||||| |||||   |||||||||||  ||||||||||||||||||||     
T  2888040 aacatatttataggggtttacataagactttgctagcaattaataaaaaaatctaaaaaaattgttcaatttataggagtttatataaaaaattcataga 2888139  T
Q  121 gatttgcataagaaattgcaaaaaa 145  Q
    ||||| ||||||||||| |||||||    
T  2888140 gatttacataagaaattacaaaaaa 2888164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 3597929 - 3597843
Alignment:
Q  111 aattcatagggatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    |||| |||||||||| || |||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  3597929 aatttatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcc 3597843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 23685499 - 23685406
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||  | |||||||| |||||||||||| |||||    
T  23685499 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaatatataaataaattgtcaaatttataaggatttatataagaaatt 23685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 40780054 - 40780179
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttataggg-atttatataaaaaattcatag 119  Q
    ||||||||||||  |||||||||||||||||||||||||||||| ||||||| |||| |||||  | |||||||||||  ||||||||| ||||||| ||    
T  40780054 aacatatttatagcggtttacataagaaattgcaagcaaataattaaaaaatttaaaaaaattgtcaaatttatagggtgtttatataagaaattcagag 40780153  T
Q  120 ggatttgcataagaaattgcaaaaaa 145  Q
    | |||| ||||||||||| |||||||    
T  40780154 gaatttacataagaaattacaaaaaa 40780179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 41674836 - 41674716
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaa-tctaaagaaatttcccaatttatagggatttatataaaaaattcatag 119  Q
    |||| ||||||| || |||| ||||||||||||||||||||| | |||||| ||||||||||||  |||||||||| || ||||||||||||||||| ||    
T  41674836 aacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaaatctaaagaaattgtccaatttataagggtttatataaaaaattcagag 41674737  T
Q  120 ggatttgcataagaaattgca 140  Q
     ||||| ||||||||||||||    
T  41674736 agatttacataagaaattgca 41674716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 28321832 - 28321689
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| ||||||| ||||||||||| |||||||||||||||||||  || |||||| ||||||||||| || ||||||||| | |||||   |    
T  28321832 aacacatttataggggtttatataagaaattggaagcaaataatcaaaaaattcaatgaaattgcccaatttataagggtttatataagatattcaggag 28321733  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggc 164  Q
     |||| ||||||||||||||||||| |||| | || ||||||||    
T  28321732 aatttacataagaaattgcaaaaaaattgggcaagtgcccgggc 28321689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 43139760 - 43139875
Alignment:
Q  36 gtttacataagaaattgcaagcaaataatcaaaa-aatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaa 134  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||| ||||||||| ||||| | ||| | || ||||||||    
T  43139760 gtttatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgctcaatttataggggtttatataagaaattaagaggaacttacataagaa 43139859  T
Q  135 attgcaaaaaatttgg 150  Q
    ||||||||||| ||||    
T  43139860 attgcaaaaaaattgg 43139875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 32486243 - 32486320
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttataggg 98  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||| || ||||| ||||||||||||||    
T  32486243 aacacatttataagtgtttatataagaaattgcaagcaaataattaaaaaatcttaaaaaattacccaatttataggg 32486320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 25665223 - 25665297
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttata 95  Q
    ||||||||||||  |||||  |||| |||||||||||||||||||||||||  |||||||||| |||||||||||    
T  25665223 aacatatttatagcggtttgtataaaaaattgcaagcaaataatcaaaaaacttaaagaaattacccaatttata 25665297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 1386190 - 1386115
Alignment:
Q  122 atttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    |||| ||||||||||||||||||| ||||  | |||||||||||||||| |||||||| || ||| ||||||||||    
T  1386190 atttacataagaaattgcaaaaaaattgggtccgagcccgggcgagtgcccggggtcgtcgagccatagaaccgcc 1386115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 3597973 - 3597914
Alignment:
Q  43 taagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggattta 103  Q
    |||||||||||||| ||||||| ||||||| ||||||||||  ||||||||||||||||||    
T  3597973 taagaaattgcaagtaaataat-aaaaaatgtaaagaaattgtccaatttatagggattta 3597914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 17888679 - 17888503
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  17888679 aacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattcatagg 17888580  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
     |||| |||||||||||| ||||||||||| || |||||||||||||||| |||||||||| |||| ||||||||||    
T  17888579 aatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgcctggccatagaaccgcc 17888503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 1535789 - 1535946
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  1535789 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 1535887  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||    
T  1535888 caaaaaatttggcccggagcccgggcgagtgccccgggtcgccgggccttagaaccgcc 1535946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 31377389 - 31377564
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| |||||||  |||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||| |  |||||||| |||||||||||    
T  31377389 aacacatttatagcggtttacataagaaattgcaagcaaatagttaaaaaatctaaagaaattgcccaatttatagagggttatataagaaattcatagg 31377488  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||| |||||||||||| ||||||||||| || |||||||||||||||| ||||||||||||||| ||||||||||    
T  31377489 gatttacataagaaattg-aaaaaatttgggccggagcccgggcgagtgcccggggtcgccgggccatagaaccgcc 31377564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 35018937 - 35019110
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| |||||||||| | |||||||||||||||||||||||||| ||||||| |||||||||| || |||||||| || ||||||||| |||||||||||    
T  35018937 aacacatttataagg-tgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattacctaatttataagggtttatataagaaattcatagg 35019034  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
     |||| || ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  35019035 -atttacacaagaaattgtaaaaaatttggcccagagcccgggcgagtgcccagggtcgccgggccttagaaccgcc 35019110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 39 - 195
Target Start/End: Original strand, 49284375 - 49284530
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  49284375 tacataagaaattgcaaacaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 49284473  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccg 195  Q
    ||||||||||||||| |||||||| ||||||| |||| |||| ||||||||||||||    
T  49284474 caaaaaatttggcccggagcccggacgagtgcccgggttcgctgggccttagaaccg 49284530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 20818571 - 20818742
Alignment:
Q  26 atttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggattt 125  Q
    |||||||  ||||||||||||||||||||| ||||||||||||||||||||| |||||  ||||||||||||  ||||||||| ||||||||||||||||    
T  20818571 atttatagaggtttacataagaaattgcaaacaaataatcaaaaaatctaaaaaaattgaccaatttataggagtttatataagaaattcatagggattt 20818670  T
Q  126 gcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
     || |||||||||||||||||||||  |||||||||||||||||| ||| ||||||||  | ||||||||||    
T  20818671 acaaaagaaattgcaaaaaatttgggtcagagcccgggcgagtgcccggagtcgccggatcatagaaccgcc 20818742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 11054452 - 11054630
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaat---ctaaagaaatttcccaatttatagggatttatataaaaaattcat 117  Q
    |||| |||||||| |||||||||||||||||||||||||||||  ||||||    ||||||| ||| |||||||||||| | ||||||||| ||||||||    
T  11054452 aacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttatataagaaattcat 11054551  T
Q  118 agggatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    |||||||| ||||||||||||||||||| |||| || ||||||||| |||||||||||||||||||||| ||||||||||    
T  11054552 agggatttacataagaaattgcaaaaaa-ttggaccggagcccgggtgagtgctcggggtcgccgggccatagaaccgcc 11054630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 44 - 197
Target Start/End: Complemental strand, 16338318 - 16338166
Alignment:
Q  44 aagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaa 143  Q
    ||||||||||||||||||||| ||||||| ||||||||||  ||||||||||||||||||||||||||||||||||| |||| || || |||||||||||    
T  16338318 aagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaa 16338220  T
Q  144 aatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    || ||||||| ||  |||||||| ||| ||||||||||||||||||||||||||    
T  16338219 aaattggcccggaatccgggcgaatgcccggggtcgccgggccttagaaccgcc 16338166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 36012295 - 36012139
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    ||||||| |||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || || ||||||    
T  36012295 tacataaaaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattg 36012197  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    |||||||||||||||  ||||| | ||||||| | ||||||||||||||||||||||||    
T  36012196 caaaaaatttggcccgaagccc-gacgagtgcccagggtcgccgggccttagaaccgcc 36012139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 37801374 - 37801217
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||||||||||||||||||||||  |||| || |||||||||    
T  37801374 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaatttgcccaatttatagggatttatataaaaaattcatagaaatttacacaagaaattg 37801276  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    |||||||||| |||| |||||||| ||| |||  | | ||| |||||||||||||||||    
T  37801275 caaaaaatttagcccggagcccggacgaatgcctgagatcgtcgggccttagaaccgcc 37801217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 34241011 - 34241134
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||| | || |||||||||    
T  34241011 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatctacacaagaaattg 34241109  T
Q  139 caaaaaatttggcccagagcccggg 163  Q
    ||||||||||||||| |||||||||    
T  34241110 caaaaaatttggcccggagcccggg 34241134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 25954768 - 25954891
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||  ||||||||| ||||||||||| |||| || |||||||||    
T  25954768 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggagtttatataagaaattcataggaatttacacaagaaattg 25954866  T
Q  139 caaaaaatttggcccagagcccggg 163  Q
    ||||||||||||||| |||||||||    
T  25954867 caaaaaatttggcccggagcccggg 25954891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 46473993 - 46474136
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| |||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||   ||||||||| || ||||||||||||||||| |||    
T  46473993 aacacatttataaggatttacataagaaattacaagcaaataatacaaaaatctaaagaaattgtacaatttatatgggtttatataaaaaattcacagg 46474092  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggc 164  Q
     |||| |||||||||||||||||||||||| || |||| |||||    
T  46474093 aatttacataagaaattgcaaaaaatttgggccggagctcgggc 46474136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 9742657 - 9742496
Alignment:
Q  26 atttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggattt 125  Q
    ||||||| | ||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| || |||||| ||||||| ||| ||||    
T  9742657 atttataggtgtttacataagaaattgcatgaaaataatcaaaaaatctaaagaaattgcccaatttataggggttaatataagaaattcagaggaattt 9742558  T
Q  126 gcataagaaattg---caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggc 185  Q
     ||||||||||||    |||||| |||| |||||||| | ||| |||| ||||||||||||||    
T  9742557 acataagaaattgtaaaaaaaaaattgggccagagccggtgcgcgtgc-cggggtcgccgggc 9742496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 39 - 193
Target Start/End: Complemental strand, 46583651 - 46583508
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||||| ||||||||| |||||||||||||||| ||              
T  46583651 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcatagggatttaca---------- 46583563  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaac 193  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||| |||||||||    
T  46583562 caaaaaatttgacccggagcccgggcgagtgcccggggtcgccggaccttagaac 46583508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 322663 - 322509
Alignment:
Q  36 gtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaa----ttcatagggatttgca-ta 130  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||| ||||||||| |||    |||| ||| |||| || ||    
T  322663 gtttacataagaaattgcaagcaaataatcaaaaaatttaaagaaattgtccaatttataggggtttatataagaaattccttcagaggaatttacatta 322564  T
Q  131 agaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggc 185  Q
    | ||||||||||||||||||  || |||||||||| |||| |||| |||||||||    
T  322563 aaaaattgcaaaaaatttgggtcatagcccgggcgcgtgcccgggatcgccgggc 322509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 12792345 - 12792200
Alignment:
Q  36 gtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaa 135  Q
    ||||| |||||||||| ||||||||||||| |||||||||||| |||| |||||||||||||| ||||||||| ||||||| ||  |||| |||||||||    
T  12792345 gtttatataagaaatttcaagcaaataatctaaaaatctaaagtaattgcccaatttataggggtttatataagaaattcagagaaatttacataagaaa 12792246  T
Q  136 ttgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgcc 181  Q
    || ||||||| |||| ||| ||||||| || |||| |||| |||||    
T  12792245 ttacaaaaaaattgggccaaagcccggacgcgtgcccgggatcgcc 12792200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 91 - 195
Target Start/End: Complemental strand, 36851446 - 36851342
Alignment:
Q  91 ttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttag 190  Q
    |||||||| ||||||||| |||||||||||||||| || |||||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||||||     
T  36851446 ttataggggtttatataataaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccaggcgagtgcccggggtcgctgggccttaa 36851347  T
Q  191 aaccg 195  Q
    |||||    
T  36851346 aaccg 36851342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 194
Target Start/End: Original strand, 52632536 - 52632680
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||| | ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||              
T  52632536 tacataagaaattgcaagcaaatatt-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca---------- 52632624  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaacc 194  Q
    ||| ||||||||||| |||||| ||| ||||| ||||||| |||||||||||||||    
T  52632625 caagaaatttggcccggagcccaggcaagtgcccggggtcaccgggccttagaacc 52632680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 50328795 - 50328938
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| |||||||||||||||||||| ||||||||||  |||||| ||||||| ||||||||||  ||||||||||| | ||||||||| ||||| | |||    
T  50328795 aacacatttataagggtttacataaaaaattgcaagtgaataataaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattaagagg 50328894  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggc 164  Q
     |||| || |||||||||||||||| |||  |||||||||||||    
T  50328895 aatttacaaaagaaattgcaaaaaaattgagccagagcccgggc 50328938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 10094495 - 10094393
Alignment:
Q  48 aattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaaaatt 147  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||| ||  |||| ||||||||||| |||||||||    
T  10094495 aattgcaagcaaataatcaaaaaatctaaataaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattacaaaaaatt 10094396  T
Q  148 tgg 150  Q
    |||    
T  10094395 tgg 10094393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 54090191 - 54090307
Alignment:
Q  33 agggtttacataagaaa-ttgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataa 131  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||||| ||||| ||||||||||| |  ||||||||| ||||||| |||||||| || ||    
T  54090191 agggtttacataaaaaaattgcaagcaaataat-aaaaaatctaaaaaaattgcccaatttataagagtttatataataaattcagagggatttacaaaa 54090289  T
Q  132 gaaattgcaaaaaatttg 149  Q
    | ||||||||||||||||    
T  54090290 ggaattgcaaaaaatttg 54090307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 35322827 - 35322704
Alignment:
Q  27 tttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttg 126  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||||| | ||||||||| | ||||| ||  ||||     
T  35322827 tttataggggtttatataagaaattgcaagcaaataatcaaaaaatctaaagaaattgttcaatttatagaggtttatataagagattcagagaaattta 35322728  T
Q  127 cataagaaattgcaaaaaatttgg 150  Q
     |||| ||||| ||||||| ||||    
T  35322727 tataaaaaattacaaaaaaattgg 35322704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 47084056 - 47084138
Alignment:
Q  66 aaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaaaattt 148  Q
    |||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||  |||| ||||||||||||||||||||||    
T  47084056 aaaaaatctaaagaaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattgcaaaaaattt 47084138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 19124851 - 19124743
Alignment:
Q  37 tttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaat 136  Q
    |||||||||||||||| ||| ||||||| ||||||| ||||||||||   ||||||| ||   ||||||||| ||||||| ||| |||| ||||||||||    
T  19124851 tttacataagaaattgtaagtaaataataaaaaaatttaaagaaattgatcaatttacagatgtttatataagaaattcagaggaatttacataagaaat 19124752  T
Q  137 tgcaaaaaa 145  Q
    |||||||||    
T  19124751 tgcaaaaaa 19124743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 24991962 - 24992014
Alignment:
Q  31 taagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatt 83  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  24991962 taagggtttacataagaaattgccagcaaataatcataaaatctaaagaaatt 24992014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 5780846 - 5780790
Alignment:
Q  58 aaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaatt 114  Q
    ||||||| ||||||| |||||||||| ||||||||||| |||||||||||| |||||    
T  5780846 aaataataaaaaaatttaaagaaattgcccaatttataaggatttatataagaaatt 5780790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 33982001 - 33982130
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaa--taatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcata 118  Q
    |||| ||||| | |||||||||||| ||||||||||||||  || | | | ||||||||||||||  | |||||||| |  ||||||||| ||||| | |    
T  33982001 aacacatttacatgggtttacataaaaaattgcaagcaaaaatattaatacaatctaaagaaattatctaatttataagagtttatataagaaatttaga 33982100  T
Q  119 gggatttgcataagaaattgcaaaaaattt 148  Q
    ||||||| || ||||||||  |||||||||    
T  33982101 gggatttacaaaagaaattttaaaaaattt 33982130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 16338354 - 16338311
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatt 83  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||    
T  16338354 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaatt 16338311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 8950631 - 8950457
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||||||||||| |||  ||||||||||||| |||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||    
T  8950631 aacatatttata-gggcgtacataagaaatttcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagg 8950534  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
     |||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  8950533 aatttacacaagaaattgcaaaaaatttggcccagagcccgggcgagtgcccggggtcgccaggccttagaaccgcc 8950457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 21853215 - 21853372
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  21853215 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggttttatataagaaattcatagggatttacacaagaaattg 21853313  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||    
T  21853314 caaaaaatttggcccggagcccggccgagtgcccggggtcgccgggccttagaaccgcc 21853372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 1781761 - 1781937
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||| |||    
T  1781761 aacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttattggggtttatataagaaattcagagg 1781860  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||| |||||||||||||||||||||||| |||||||| |||||| ||| |||| ||||||||||||  |||||||    
T  1781861 gatttacataagaaattgcaaaaaatttgggccagagcctgggcgactgcacgggctcgccgggccttgaaaccgcc 1781937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 20382523 - 20382692
Alignment:
Q  26 atttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggattt 125  Q
    ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  20382523 atttataggagtttacataagaaattgcaagcaaataataaaaaaatctaaagaaatttcccaatttataggggtttatataagaaattcatagggattt 20382622  T
Q  126 gcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
     |||||||||||  ||||||||||| || |||||||||| ||||| |||||||||| |||| ||||||||||    
T  20382623 acataagaaatt-aaaaaaatttgggccggagcccgggcaagtgcccggggtcgcc-ggccatagaaccgcc 20382692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 13856117 - 13856274
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||||||||||||||| |||||||||||||||| || |||||||||    
T  13856117 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttatagggatttatataagaaattcatagggatttacacaagaaattg 13856215  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
     |||||||||||||| |||||||||| ||||| | ||||||||||||||||||||||||    
T  13856216 aaaaaaatttggcccggagcccgggcaagtgccctgggtcgccgggccttagaaccgcc 13856274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 44995079 - 44994921
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttata-gggatttatataaaaaattcatagggatttgcataagaaatt 137  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||| ||| ||||||||| |||||||||||||||| || ||||||||    
T  44995079 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataaggggtttatataagaaattcatagggatttacacaagaaatt 44994981  T
Q  138 gcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    |||||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||    
T  44994980 gcaaaaaatttggcccggagcccgagcgagtacccggggtcgccgggccttagaaccgcc 44994921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 40846027 - 40845870
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || || ||||||    
T  40846027 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattg 40845929  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||| ||| || ||||||||| ||| || |||||||||||||||||||||||    
T  40845928 caaaaaatttgacccggaacccgggcgaatgcccgaggtcgccgggccttagaaccgcc 40845870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 36539631 - 36539807
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| ||||||||||| |||||||||| |||||||||||||||| |||||||||| ||||||||||||||  |||||||| ||||| |||||    
T  36539631 aacacatttataggggtttacataggaaattgcaaacaaataatcaaaaaatttaaagaaattgcccaatttataggggattatataagaaatttatagg 36539730  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||| |||||||||||||| ||||||| | || |||||||||||| ||| || | ||||| |||||||||||||||    
T  36539731 gatttacataagaaattgcataaaatttaggccggagcccgggcgactgcccgagctcgccaggccttagaaccgcc 36539807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 43347453 - 43347289
Alignment:
Q  33 agggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataag 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||| ||| |||| ||||||    
T  43347453 agggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttgtaggggtttatataagaaattcagaggaatttacataag 43347354  T
Q  133 aaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||||||  | |||||||| | | ||| |  | |||||||| ||||||||||||    
T  43347353 aaattgcaaaaaatttgggtcggagcccggacaactgcccaagctcgccgggtcttagaaccgcc 43347289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 5391475 - 5391632
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  5391475 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 5391573  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
      ||||| ||||| | |||||||||||||||| | ||||||||||||| ||||||||||    
T  5391574 tcaaaaaattggcgcggagcccgggcgagtgcccagggtcgccgggccatagaaccgcc 5391632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 36 - 163
Target Start/End: Complemental strand, 10839494 - 10839367
Alignment:
Q  36 gtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaa 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||||||| ||  |||| |||||||||    
T  10839494 gtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttatagaggtttatataagaaattcagagaaatttacataagaaa 10839395  T
Q  136 ttgcaaaaaatttggcccagagcccggg 163  Q
    |||||||||||||||  | |||||||||    
T  10839394 ttgcaaaaaatttgggtcggagcccggg 10839367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 8926765 - 8926909
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||||||| | ||||||| |||    
T  8926765 aacacatttataagggttaacataagaaattgcaagcaaataatcaaaaaatctacagaaattgccaaatttataggggtttatatcagaaattcagagg 8926864  T
Q  121 gatttgcataagaaattgc-aaaaaatttggcccagagcccgggc 164  Q
     |||| |||| |||||||| |||||| |||| |||||||||||||    
T  8926865 aatttacatatgaaattgcaaaaaaaattgggccagagcccgggc 8926909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 3178703 - 3178841
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||||||||||| | ||||||||| ||||||||||||||||||  |||||| ||||||||||| |||||||||||| ||||||||||| |||||||||||    
T  3178703 aacatatttataggagtttacatacgaaattgcaagcaaataaaaaaaaaa-ctaaagaaattgcccaatttatagagatttatataagaaattcatagg 3178801  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagccc 160  Q
    ||||| || ||||||||| ||||||||||| || ||||||    
T  3178802 gatttacacaagaaattgaaaaaaatttgggccggagccc 3178841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 32352865 - 32352995
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||| ||||||||||| ||||||| |||||||||| || ||||||||||| ||||||||| ||||||||||||||||  | |||||||||    
T  32352865 tacataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcatagggatttatacaagaaattg 32352963  T
Q  139 caaaaaatttggcccagagcccgggcgagtgc 170  Q
    ||||||| ||||||| ||||||||||||||||    
T  32352964 caaaaaaattggcccggagcccgggcgagtgc 32352995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 54546901 - 54547027
Alignment:
Q  18 tgtaacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcat 117  Q
    ||||||| ||||||| || |||||||||||||||| |||||||||||||||| |||||||||||||  ||||||||||||| ||||||||| |||||||     
T  54546901 tgtaacacatttatagggatttacataagaaattgtaagcaaataatcaaaa-atctaaagaaattgtccaatttataggggtttatataagaaattcaa 54546999  T
Q  118 agggatttgcataagaaattgcaaaaaa 145  Q
    ||| |||| | |||||||||||||||||    
T  54547000 aggaatttacgtaagaaattgcaaaaaa 54547027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 19649502 - 19649360
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatc-aaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatag 119  Q
    |||| ||||||| ||  |||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||| || ||||||||| ||||||||||    
T  19649502 aacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttataagggtttatataagaaattcatag 19649403  T
Q  120 ggatttgcataagaaattgcaaaaaatttggcccagagcccgg 162  Q
     ||||| ||||||||||| ||||||| |||  || ||||||||    
T  19649402 cgatttacataagaaattacaaaaaagttgtgccggagcccgg 19649360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 23467604 - 23467519
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggattt 125  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  23467604 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggattt 23467519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 22845488 - 22845362
Alignment:
Q  22 acatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcataggg 121  Q
    ||||||||||| ||||||| |||| |||||||||||||||||| ||||||||||||||||||  | ||||||||||| ||||||||| ||||| |   |     
T  22845488 acatatttata-gggtttatataaaaaattgcaagcaaataat-aaaaaatctaaagaaattgtcaaatttataggggtttatataagaaatttaggtga 22845391  T
Q  122 atttgcataagaaattgcaaaaaatttgg 150  Q
    |||| ||||||||||||||||||||||||    
T  22845390 atttacataagaaattgcaaaaaatttgg 22845362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 33103743 - 33103866
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| |||||||||| ||||||||||||||| |||||||||||| ||||||| |||| |||||  |||||||||||||| |||||||| ||||| |  ||    
T  33103743 aacacatttataaggatttacataagaaattacaagcaaataat-aaaaaatttaaataaattatccaatttatagggacttatataagaaatttaaggg 33103841  T
Q  121 gatttgcataagaaattgcaaaaaa 145  Q
     |||| |||||||||||||||||||    
T  33103842 aatttacataagaaattgcaaaaaa 33103866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 48206853 - 48206968
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||  | ||||||||||| ||||||| || |||||| |||    
T  48206853 aacacatttataagtgtttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggggtttatat-aagaattcagagg 48206951  T
Q  121 gatttgcataagaaatt 137  Q
     |||| ||||| |||||    
T  48206952 aatttacataaaaaatt 48206968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 47889736 - 47889824
Alignment:
Q  33 agggtttacataagaaattg-caagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    ||||||||||| |||||||| |||| ||||||| ||||||| |||||||||| ||||||||||||| |||||||||| |||||||||||    
T  47889736 agggtttacattagaaattgtcaagtaaataataaaaaaatttaaagaaattgcccaatttataggaatttatataagaaattcatagg 47889824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 19644461 - 19644327
Alignment:
Q  18 tgtaacatatttataagggtttacataagaaattgcaagcaaataatc-aaaaaatctaaagaaatttcc-caatttatagggatttatataaaaaattc 115  Q
    ||||||| ||||||| ||  |||||||||||||||||| ||||||||| |||||||||||| ||| ||   |||||||||  ||||||||||||||||||    
T  19644461 tgtaacacatttatagggaattacataagaaattgcaatcaaataatccaaaaaatctaaaaaaaattgttcaatttataaagatttatataaaaaattc 19644362  T
Q  116 atagggatttgcataagaaattgcaaaaaatttgg 150  Q
    ||||  |||| ||||| ||||| ||||||| ||||    
T  19644361 atagcaatttacataaaaaattacaaaaaaattgg 19644327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 46685903 - 46685784
Alignment:
Q  29 tataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgca 128  Q
    |||| |||||| ||||||||||||||| |||||||| ||||||| ||||||||||  | ||||||||||  ||||||||| ||||| |  ||||||| ||    
T  46685903 tataggggtttgcataagaaattgcaaacaaataat-aaaaaatataaagaaattgtcaaatttataggagtttatataagaaatttagggggatttaca 46685805  T
Q  129 taagaaattgcaaaaaatttgg 150  Q
    ||||||| ||||||||||||||    
T  46685804 taagaaa-tgcaaaaaatttgg 46685784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 51336224 - 51336339
Alignment:
Q  36 gtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaa 135  Q
    |||||| |||||||||||||| ||||||| ||||||| ||||||||||  | ||||||||  |||||||||||||||||||   | |||| ||||| |||    
T  51336224 gtttacgtaagaaattgcaagtaaataat-aaaaaatttaaagaaattgtcaaatttataaagatttatataaaaaattcaggagaatttacataaaaaa 51336322  T
Q  136 ttgcaaaaaatttggcc 152  Q
    |||||||||| ||||||    
T  51336323 ttgcaaaaaaattggcc 51336339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 6280487 - 6280361
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| |||||||| ||||||||||| |||| |||||||||| |||||||| |||||| |||||  | ||||||||| | ||||||||| |||||||  |     
T  6280487 aacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcaggga 6280389  T
Q  121 gatttgcataagaaattgcaaaaaattt 148  Q
     |||| |||||||||||||| |||||||    
T  6280388 aatttacataagaaattgcacaaaattt 6280361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 27642723 - 27642787
Alignment:
Q  85 cccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaaaatttg 149  Q
    ||||||||||| |||||||||||| ||||||| | |||||| |||||||||||||||||||||||    
T  27642723 cccaatttataaggatttatataagaaattcaaaaggatttacataagaaattgcaaaaaatttg 27642787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 791831 - 791906
Alignment:
Q  36 gtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaatt 114  Q
    |||||||||||||||| |||   |||||||||||||| |||||||||| | ||||||||||| |||||||||| |||||    
T  791831 gtttacataagaaattacaa---aataatcaaaaaatataaagaaattacgcaatttataggaatttatataagaaatt 791906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 36826083 - 36826020
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattt 84  Q
    |||| ||||||| |||||||||||||||| ||||||||||| || ||||||| |||||||||||    
T  36826083 aacacatttataggggtttacataagaaactgcaagcaaatcattaaaaaatttaaagaaattt 36826020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 47315233 - 47315142
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaa 112  Q
    |||||||||||| | ||||||||||||||||||||  ||||||||||||||  ||| ||||||   |||||| ||| | |||||||| ||||    
T  47315233 aacatatttataggagtttacataagaaattgcaaataaataatcaaaaaaattaaggaaattgttcaatttttagaggtttatatataaaa 47315142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 50663177 - 50663257
Alignment:
Q  65 caaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaaaa 145  Q
    ||||||||  ||||||||||  ||||||||| || ||||||||| ||||| | ||| || | |||||||||||||||||||    
T  50663177 caaaaaatacaaagaaatttttcaatttataagggtttatataagaaatttagaggaatctacataagaaattgcaaaaaa 50663257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 34707134 - 34707291
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  34707134 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 34707232  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||    
T  34707233 caaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggtcttagaaccgcc 34707291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 10576691 - 10576848
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  10576691 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 10576789  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||| |||||||||||||    
T  10576790 caaaaaatttggcccggagcccgggtgagtgcccggggtcgccggaccttagaaccgcc 10576848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 34259536 - 34259693
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  34259536 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 34259634  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  34259635 caaaaaaattggcccggagcccgggcgagtgcccggagtcgccgggccttagaaccgcc 34259693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 44164853 - 44164696
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| ||||||||||  |||| || |||||||||    
T  44164853 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagaaatttacacaagaaattg 44164755  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  44164754 caaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcc 44164696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 29238253 - 29238096
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||| ||||||||||| ||||||| ||||||||||| ||||||| ||||| ||||||||| |||||||||||||||| || |||||||||    
T  29238253 tacataagaaattgtaagcaaataat-aaaaaatgtaaagaaattttccaatttttaggggtttatataagaaattcatagggatttacacaagaaattg 29238155  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||| ||||||| |||||||||||||||| |||||| |||||||||||||||||||    
T  29238154 caaaaaaattggcccggagcccgggcgagtgcccggggttgccgggccttagaaccgcc 29238096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 29981223 - 29981066
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||  |||||||||||   ||||||||| |||||||||||||||| || |||||||||    
T  29981223 tacataagaaattgcaagcaaataat-aaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcatagggatttacacaagaaattg 29981125  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||| | ||||||| |||||||||||||||| || |||||||||| ||||||||||||    
T  29981124 caaaagaattggcccggagcccgggcgagtgcccgaggtcgccgggtcttagaaccgcc 29981066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 10334177 - 10334322
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| ||||||||||||||||||||||||||||| | |||| ||||||||||||| ||||||||||| |  ||||||||| ||||||| |||    
T  10334177 aacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcccaatttataagagtttatataagaaattcagagg 10334276  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcga 166  Q
     |||| ||||||||||||||||||| |||| |||||||||||||||    
T  10334277 aatttacataagaaattgcaaaaaaattgggccagagcccgggcga 10334322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 19334678 - 19334513
Alignment:
Q  33 agggtttacataagaaattgcaagcaaataatcaaaaaa-tctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataa 131  Q
    |||||||| ||||||||||||||||||||||| |||||| ||||||||||||  ||||||||||||| ||||||||| ||||||||||| |||| |||||    
T  19334678 agggtttatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcataggtatttacataa 19334579  T
Q  132 gaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    |||||||||||||| |||| ||  | || ||| |||||  ||||||||||||||| ||||||||||    
T  19334578 gaaattgcaaaaaaattgggccgaaacctgggggagtgaccggggtcgccgggccatagaaccgcc 19334513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 29556049 - 29555892
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||||| ||||||||| ||||||||||| |||| || |||||||||    
T  29556049 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcataggaatttacacaagaaattg 29555951  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
      ||||| ||||||| ||| |||||||||||| | ||||||| ||||| ||||||||||    
T  29555950 tcaaaaaattggcccggaggccgggcgagtgcccagggtcgctgggccatagaaccgcc 29555892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 24320549 - 24320426
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||| |||| |||| || |||||||||    
T  24320549 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcgtaggaatttacacaagaaattg 24320451  T
Q  139 caaaaaatttggcccagagcccggg 163  Q
    ||||||||||||||| |||||||||    
T  24320450 caaaaaatttggcccggagcccggg 24320426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 37 - 163
Target Start/End: Complemental strand, 33057770 - 33057644
Alignment:
Q  37 tttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaat 136  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||  |||||||| |||||||||||||||| ||||||||||    
T  33057770 tttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatataagaaattcatagggatttacataagaaat 33057671  T
Q  137 tgcaaaaaatttggcccagagcccggg 163  Q
    || |||||| |||| || |||||||||    
T  33057670 tgaaaaaaaattgggccggagcccggg 33057644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 17303244 - 17303101
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaa-tctaaagaaatttcccaatttatagggatttatataaaaaattcatag 119  Q
    |||| |||||||  |||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| | || ||||||||| ||||||||||    
T  17303244 aacacatttatagtggtttacataagaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttacaagggtttatataagaaattcatag 17303145  T
Q  120 ggatttgcataagaaattgcaaaaaatttggcccagagcccggg 163  Q
    | |||| ||||||||||||||||||| ||||  | |||||||||    
T  17303144 gaatttacataagaaattgcaaaaaaattgggtcggagcccggg 17303101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 32876640 - 32876527
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||||| ||||||||| |||||||||||||| | || |||||||||    
T  32876640 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatctacacaagaaattg 32876542  T
Q  139 caaaaaatttggccc 153  Q
    |||||||||||||||    
T  32876541 caaaaaatttggccc 32876527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 44 - 192
Target Start/End: Original strand, 9770682 - 9770830
Alignment:
Q  44 aagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgc-aaa 142  Q
    |||||||||||||||||||||| |||| ||||||||||||  |||||| |||| | ||||||||| |||||||    ||||| ||||||||||||| |||    
T  9770682 aagaaattgcaagcaaataatc-aaaagtctaaagaaattgtccaattcatagtggtttatataagaaattcaggatgatttacataagaaattgcaaaa 9770780  T
Q  143 aaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaa 192  Q
    ||| |||| ||  || |||||| ||||| | || ||||||||||||||||    
T  9770781 aaaattgggccgaagtccgggcaagtgcccaggctcgccgggccttagaa 9770830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 26284506 - 26284383
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||||||  ||||||||||   | || ||||| ||||||| |||    
T  26284506 aacacatttataggggtttacaaaagaaattgcaagaaaataat-aaaaaatctaaagaaattgtccaatttata-ctagttttataagaaattcagagg 26284409  T
Q  121 ga-tttgcataagaaattgcaaaaaa 145  Q
    || ||| |||||||||||||||||||    
T  26284408 gattttacataagaaattgcaaaaaa 26284383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 15017817 - 15017896
Alignment:
Q  66 aaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaaaa 145  Q
    ||||||||||||||||||  |||||||||| |  ||||||||| ||||||| ||| |||| |||||||||||||||||||    
T  15017817 aaaaaatctaaagaaattgtccaatttatacgcgtttatataagaaattcagaggaatttacataagaaattgcaaaaaa 15017896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 2702349 - 2702287
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatt 83  Q
    ||||||||| || ||||||||||||||||||||| | ||||||| |||||||||||| |||||    
T  2702349 aacatatttttatgggtttacataagaaattgcatgaaaataataaaaaaatctaaaaaaatt 2702287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 43342420 - 43342533
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||| | ||||||||||||||||||||  |||     |||||||||||||||||| |||||     |||| ||||||||| ||||||| |||    
T  43342420 aacacatttataggtgtttacataagaaattgcaataaaa-----aaaaaatctaaagaaattgcccaa-----aggg-tttatataagaaattcagagg 43342508  T
Q  121 gatttgcataagaaattgcaaaaaa 145  Q
     |||| |||||||||||||||||||    
T  43342509 aatttacataagaaattgcaaaaaa 43342533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 2702254 - 2702188
Alignment:
Q  128 ataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaacc 194  Q
    |||| ||||||||||||| |||| || |||||||||| ||||| |||| ||||||||| ||||||||    
T  2702254 ataaaaaattgcaaaaaacttgggccggagcccgggcaagtgcacgggctcgccgggcattagaacc 2702188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 23032238 - 23032192
Alignment:
Q  37 tttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatt 83  Q
    |||| |||| ||||| |||||||||||||||||||||||||||||||    
T  23032238 tttagataaaaaattacaagcaaataatcaaaaaatctaaagaaatt 23032192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 41853132 - 41853226
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatc-aaaaaatctaaagaaatttcccaatttatagggatttatataaaaaatt 114  Q
    |||| |||||||  |||||| |||  ||||||||||||||||||| |||||||||||| |||||  |||| ||||||| ||||| |||| |||||    
T  41853132 aacacatttatagaggtttatatagaaaattgcaagcaaataatcaaaaaaatctaaaaaaattgtccaacttataggaatttaaataagaaatt 41853226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 41853217 - 41853259
Alignment:
Q  128 ataagaaattgcaaaaaatttggcccagagcccgggcgagtgc 170  Q
    ||||||||||||||||||||||| || ||||||||||||||||    
T  41853217 ataagaaattgcaaaaaatttgggccggagcccgggcgagtgc 41853259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 25128204 - 25128163
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaata 62  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  25128204 aacatatttatatgggtttacataagaaattgcatgcaaata 25128163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 23032164 - 23032104
Alignment:
Q  90 tttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaaaatttgg 150  Q
    ||||||| | |||||||||||| |||| |||||||| ||||| |||||| ||||| |||||    
T  23032164 tttatagaggtttatataaaaatttcagagggatttacataaaaaattgtaaaaattttgg 23032104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 35806806 - 35806969
Alignment:
Q  33 agggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataag 132  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||| ||||| || |||    
T  35806806 agggtgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttacacaag 35806904  T
Q  133 aaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||    
T  35806905 aaattgcaaaaaatttggcccggagcccggccgagtgcccggggtcgccgggccttagaaccgcc 35806969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 22324614 - 22324771
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || ||||||||     
T  22324614 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaatta 22324712  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||    
T  22324713 caaaaaatttggcccggagcccgggcgagtgcccggggttgccgggccttagaaccgcc 22324771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 42072443 - 42072603
Alignment:
Q  36 gtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaa 135  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||||| ||||||||| |||||||||||||||| || ||||||    
T  42072443 gtttacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaa 42072541  T
Q  136 ttgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    |||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||||||    
T  42072542 ttgcaaaaaaattggcccggagcccgggcgagtgcccggggtcgccgggccatagaaccgcc 42072603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 26021413 - 26021572
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  26021413 tacataagaaattgcaagcaaataataaaaaaatgtaaagaaattacccaatttataggggtttatataagaaattcatagggatttacaaaagaaattg 26021512  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgcc-gggccttagaaccgcc 197  Q
    ||||||||||||| | |||||||||| ||||| ||||||| || ||||||||||||||||    
T  26021513 caaaaaatttggcacggagcccgggctagtgcccggggtcaccggggccttagaaccgcc 26021572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 21525376 - 21525533
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  21525376 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 21525474  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||| ||| |||||| ||||||||| ||||||| ||||||||||||||||||    
T  21525475 caaaaaatttgacccggagccctggcgagtgcccggggtcaccgggccttagaaccgcc 21525533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 33934479 - 33934322
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||| ||||||||| ||||||||||| |||| || |||||||||    
T  33934479 tacataagaaattgcaagcaaataat-aaaaaatataaaaaaattgcccaatttataggggtttatataagaaattcataggaatttacaaaagaaattg 33934381  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||    
T  33934380 caaaaaatttggcctggagcccgggcgagtgcccggggtcgccgggccttaaaaccgcc 33934322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 42013890 - 42014047
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||  ||||||||| |||||||||||||||| || |||||||||    
T  42013890 tacataagaaattgcaagcaaataat-aaaaaatataaagaaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattg 42013988  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    |||||||||||||||  | ||||| | ||||| ||||||||||||||||||||||||||    
T  42013989 caaaaaatttggcccgaaacccggacaagtgcccggggtcgccgggccttagaaccgcc 42014047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 10112046 - 10112222
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||||||||||| ||||||||||||||||||||||  |||||||||||||||  |||||||||  |||||||||| |  ||||||||| ||||| | |||    
T  10112046 aacatatttataggggtttacataagaaattgcaaataaataatcaaaaaattaaaagaaattgtccaatttataagagtttatataagaaattaagagg 10112145  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
     |||| ||||| ||||||||||||| |||  ||||||||||||| | ||  | || |||||||||||||||||||||    
T  10112146 aatttacataaaaaattgcaaaaaaattgagccagagcccgggcaactgtccaggctcgccgggccttagaaccgcc 10112222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 24065288 - 24065410
Alignment:
Q  36 gtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaa 135  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||  ||||||||| |||||||||| |||||  || |||||    
T  24065288 gtttacataagaaattgcaagcaaataat-aaaaaagctaaagaaattgcccaatttataggagtttatataagaaattcatagagatttatatgagaaa 24065386  T
Q  136 ttgcaaaaaatttggcccagagcc 159  Q
    ||||||||  ||||||||||||||    
T  24065387 ttgcaaaagttttggcccagagcc 24065410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 16523155 - 16523270
Alignment:
Q  71 atctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgc 170  Q
    |||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||| || ||||||| |||||||     
T  16523155 atctaaagaagttgcccaatttatagggatttatataagaaattcatagggatttacatatgaaattgtaaaaaatttgggccggagcccgagcgagtgt 16523254  T
Q  171 tcggggtcgccgggcc 186  Q
     ||| |||||||||||    
T  16523255 ccggcgtcgccgggcc 16523270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 19334783 - 19334911
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||| ||| ||| ||||||||||  | ||||||||| | ||||||||||||||||||| |    
T  19334783 aacatatttataggggtt-acataagaaattgtaagcaaataataaaacaatttaaagaaattgtctaatttatagaggtttatataaaaaattcataag 19334881  T
Q  121 gatttgcataagaaattgcaaaaaatttgg 150  Q
     ||||  |||||||||||||||||||||||    
T  19334882 aatttatataagaaattgcaaaaaatttgg 19334911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 43282964 - 43282852
Alignment:
Q  37 tttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaat 136  Q
    |||||||||||||| ||||||||||||| ||||  ||||| |||||| |||||||||||||||||||||||| ||||||| | | |||| ||||||||||    
T  43282964 tttacataagaaatagcaagcaaataataaaaatttctaatgaaattacccaatttatagggatttatataataaattcagaagaatttacataagaaat 43282865  T
Q  137 tgcaaaaaatttg 149  Q
    || ||||||||||    
T  43282864 tgtaaaaaatttg 43282852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 34697518 - 34697427
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaa 112  Q
    ||||||||||||||  |||||||||||||||||||||||||||| ||||||  |||||||||||| |||||||||| |||||||||||||||    
T  34697518 aacatatttataagaatttacataagaaattgcaagcaaataataaaaaaaattaaagaaatttctcaatttatagagatttatataaaaaa 34697427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 16819104 - 16818939
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatc--taaagaaatttcccaatttatagggatttatataaaaaattcata 118  Q
    |||| ||||||| ||||||| |||| |||||||||||||||||| ||| | |   || ||||||| |||||||||||||| ||||||||| |||||||      
T  16819104 aacacatttataggggtttatataaaaaattgcaagcaaataataaaatactagatagagaaattacccaatttataggggtttatataagaaattcaag 16819005  T
Q  119 gggatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccggg 184  Q
    | ||||| || ||||||||||||||||||||| |||||||  |||||| | | |||| ||||||||    
T  16819004 gagatttacaaaagaaattgcaaaaaatttgggccagagcttgggcgactacccgggctcgccggg 16818939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 21488082 - 21488231
Alignment:
Q  37 tttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaat 136  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||  ||||||||| ||| ||| ||||| ||||||| ||| |||| || |||||||    
T  21488082 tttacataagaaattgcaagcaa-taataaaaaaatctaaagaaattgtccaatttatcggggtttctataagaaattcaaaggaatttacacaagaaat 21488180  T
Q  137 tgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggcct 187  Q
    |  ||||  ||| |  |||||||||| ||||||| |||||||||| |||||    
T  21488181 tataaaagctttaggacagagcccggacgagtgcccggggtcgccaggcct 21488231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 16591449 - 16591377
Alignment:
Q  76 aagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaaaattt 148  Q
    |||||||| |||||||||||| ||||||||||| |||||| |||  |||| ||||||||||||||||||||||    
T  16591449 aagaaattgcccaatttatagtgatttatataagaaattcttagaaatttacataagaaattgcaaaaaattt 16591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 2271239 - 2271318
Alignment:
Q  66 aaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaaaa 145  Q
    |||||||||||||||||| || ||| ||||||| ||||||||| |||||||    ||||| |||||||||||||||||||    
T  2271239 aaaaaatctaaagaaattacctaatatataggggtttatataagaaattcagcatgatttacataagaaattgcaaaaaa 2271318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 2824295 - 2824185
Alignment:
Q  36 gtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattt-cccaatttatagggatttatataaaaaattcatagggatttgcataagaa 134  Q
    ||||||||||||||||||||||||||   |||| |||  ||| |||||| ||||||||||| ||  |||||||| ||||| | ||| |||| ||||| ||    
T  2824295 gtttacataagaaattgcaagcaaatttgcaaataat--aaaaaaatttgcccaatttataaggggttatataagaaatttagaggaatttacataaaaa 2824198  T
Q  135 attgcaaaaaatt 147  Q
    |||||||||||||    
T  2824197 attgcaaaaaatt 2824185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 23756547 - 23756599
Alignment:
Q  33 agggtttacataagaaatt--gcaagcaaataatcaaaaaatctaaagaaatt 83  Q
    |||||||| ||||||||||  ||||||||||||||||||||| ||||||||||    
T  23756547 agggtttatataagaaattttgcaagcaaataatcaaaaaatttaaagaaatt 23756599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 16523069 - 16523125
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaa 77  Q
    |||| |||||| ||||||| ||||| |||||||||||||||||| | || |||||||    
T  16523069 aacacatttatgagggtttgcataaaaaattgcaagcaaataataagaatatctaaa 16523125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 16591472 - 16591440
Alignment:
Q  21 aacatatttataagggtttacataagaaattgc 53  Q
    |||| ||||||||||||||||||||||||||||    
T  16591472 aacacatttataagggtttacataagaaattgc 16591440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 9231964 - 9231807
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||||||||| ||||| || |||||||||    
T  9231964 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttacacaagaaattg 9231866  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||||    
T  9231865 caaaaaaattggcccggagcccgggcgagtgcccggggtcgccgagccttagaaccgcc 9231807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 24694761 - 24694604
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||  ||||||||| |||||||||||||||| || |||||||||    
T  24694761 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattg 24694663  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||    
T  24694662 caaaaaatttggcccggagcccgggcgagtgcccagggttgccgggccttagaaccgcc 24694604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 13627558 - 13627715
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    ||||||||||| | |||||||||||| ||||||| |||||||||| | |||||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  13627558 tacataagaaagtacaagcaaataat-aaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattg 13627656  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||    
T  13627657 caaaaaatttggcccggagcccggacgagtgcttggggtcgccgggccttagaaccgcc 13627715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 14309908 - 14309752
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattg 138  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| || |||||||||    
T  14309908 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaattg 14309810  T
Q  139 caaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||| ||  |||||||||||   ||||||||||||||||| |||||||    
T  14309809 caaaaaatttggccc-gaaaccgggcgagtgtctggggtcgccgggccttataaccgcc 14309752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 28750779 - 28750603
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||||||||  |||||||||| |||||||||||||| ||||||||| ||||||| | |    
T  28750779 aacacatttataagagtttacataagaaattacaagcaaataatcaaaaaaattaaagaaattgcccaatttataggggtttatataagaaattcagaag 28750680  T
Q  121 gatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
     |||| ||||||||||||||||||| ||||||||||||||| || | ||| | |  |||||||||||||||||||||    
T  28750679 aatttacataagaaattgcaaaaaaattggcccagagcccgagcaattgcccagactcgccgggccttagaaccgcc 28750603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 13103242 - 13103109
Alignment:
Q  26 atttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggattt 125  Q
    ||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||  | ||||||||| ||||||| ||| ||||    
T  13103242 atttataggtgtttacattagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttataaaggtttatataagaaattcagaggaattt 13103143  T
Q  126 gcataagaaattgcaaaaaatttggcccagagcc 159  Q
     ||||| |||||||||||||||||  ||||||||    
T  13103142 acataaaaaattgcaaaaaatttgagccagagcc 13103109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 47 - 170
Target Start/End: Complemental strand, 1728035 - 1727913
Alignment:
Q  47 aaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaaaat 146  Q
    |||||||||| ||||||| ||||||| |||||||||| | |||||||||||| ||||||||| |||||||||||||||| || |||||||||||||||||    
T  1728035 aaattgcaaggaaataat-aaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaat 1727937  T
Q  147 ttggcccagagcccgggcgagtgc 170  Q
    ||||||| ||||| ||||||||||    
T  1727936 ttggcccggagcctgggcgagtgc 1727913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 34103685 - 34103808
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagg 120  Q
    |||| ||||| || ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| || ||||||||| ||||||| |||    
T  34103685 aacacatttacaaaggtttacataagaaattgcaaacaaataat-aaaaaatctaaagaaatttcccaatttatacgggtttatataagaaattcagagg 34103783  T
Q  121 gatttgcataagaaattgcaaaaaa 145  Q
     |||| ||||| ||||| |||||||    
T  34103784 aatttacataataaattacaaaaaa 34103808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 11212687 - 11212765
Alignment:
Q  37 tttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattca 116  Q
    ||||||||||||||| |||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||    
T  11212687 tttacataagaaattacaagcaaataattaaaa-atctaaagaaattgcccaatttatagggatttatagaaaaaattca 11212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 11279556 - 11279634
Alignment:
Q  37 tttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattca 116  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| | ||||||||||||||||||    
T  11279556 tttacataagaaattgcaagcaaataat-aaaaaatctaaagaaattaccaaatttataagaatttatataaaaaattca 11279634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 27863714 - 27863828
Alignment:
Q  36 gtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataag-aa 134  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||| || ||||||||| ||||||| ||  |||| |||||| ||    
T  27863714 gtttacataagaaattgcaaacaaataat-aaaaaatctaaagaaattgtccaatttataagggtttatataagaaattcagagaaatttacataagaaa 27863812  T
Q  135 attgcaaaaaatttgg 150  Q
    |||||||||| |||||    
T  27863813 attgcaaaaagtttgg 27863828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 24500829 - 24500765
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttc 85  Q
    |||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  24500829 aacacatttataagggtttacatatgaaattgcaagcaaataataaaaaaatctaaagaaatttc 24500765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 11084668 - 11084764
Alignment:
Q  100 tttatataaaaaattcatagggatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||| ||||||||||| |||| || |||||||||||||||| ||||| | || ||||||||| ||| ||||||| ||||||||||||||||||    
T  11084668 tttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggctcggaacccgggcga-tgcccggggtcaccgggccttagaaccgcc 11084764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 24497646 - 24497526
Alignment:
Q  78 gaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggt 177  Q
    |||||| |||||||||||||| ||||||||| ||||||| ||| |||| || || |||||||||||||||||| || ||||| | || | ||| | || |    
T  24497646 gaaattgcccaatttataggggtttatataagaaattcagaggaatttacacaaaaaattgcaaaaaatttgggccggagcctgtgcaactgcccaggct 24497547  T
Q  178 cgccgggccttagaaccgcct 198  Q
    ||||| |||||||||||||||    
T  24497546 cgccgagccttagaaccgcct 24497526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 34383438 - 34383364
Alignment:
Q  123 tttgcataagaaattgcaaaaaatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    ||||||||||||||||| |||||||| | || |||||||||||| | | |||||||||| |||| ||||||||||    
T  34383438 tttgcataagaaattgcgaaaaatttaggccggagcccgggcgaatacccggggtcgccaggccatagaaccgcc 34383364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 7517031 - 7517077
Alignment:
Q  37 tttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatt 83  Q
    ||||| ||||||||||||||||||| || |||||||||||| |||||    
T  7517031 tttacttaagaaattgcaagcaaatgataaaaaaatctaaaaaaatt 7517077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 11084628 - 11084661
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaat 72  Q
    |||||||||||||||||||||||||| |||||||    
T  11084628 tacataagaaattgcaagcaaataataaaaaaat 11084661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 44 - 197
Target Start/End: Original strand, 54542 - 54694
Alignment:
Q  44 aagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaa 143  Q
    ||||||||||||||||||||| ||||||| ||||||||||  ||||||||||||||||||||||||||||||||||| |||| || || |||||||||||    
T  54542 aagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaa 54640  T
Q  144 aatttggcccagagcccgggcgagtgctcggggtcgccgggccttagaaccgcc 197  Q
    || ||||||| ||  |||||||| ||| ||||||||||||||||||||||||||    
T  54641 aaattggcccggaatccgggcgaatgcccggggtcgccgggccttagaaccgcc 54694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 54506 - 54549
Alignment:
Q  39 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaatt 83  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||    
T  54506 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaatt 54549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 34575 - 34457
Alignment:
Q  27 tttataagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttg 126  Q
    |||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |  ||||||||||| |||||||||||| |||||| ||||||||     
T  34575 tttataggagtttacataagaaattgtaagcaaataatcaaaaaatctaaagaaactgtccaatttatagagatttatataaagaattcagagggattta 34476  T
Q  127 cataagaaattgcaaaaaa 145  Q
    |||||||||||||||||||    
T  34475 cataagaaattgcaaaaaa 34457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 20916 - 20836
Alignment:
Q  65 caaaaaatctaaagaaatttcccaatttatagggatttatataaaaaattcatagggatttgcataagaaattgcaaaaaa 145  Q
    ||||||||||||| |||||  ||||||||||| | ||||||||| ||||||| ||| |||| |||||||||||||||||||    
T  20916 caaaaaatctaaaaaaattgtccaatttatagagctttatataagaaattcagaggaatttacataagaaattgcaaaaaa 20836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 85510 - 85550
Alignment:
Q  21 aacatatttataagggtttacataagaaattgcaagcaaat 61  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  85510 aacatatttatagaggtttacataagaaattgcaagcaaat 85550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 85552 - 85592
Alignment:
Q  74 taaagaaatttcccaatttatagggatttatataaaaaatt 114  Q
    ||||||||||  ||||||||||||||||| |||||||||||    
T  85552 taaagaaattgtccaatttatagggatttttataaaaaatt 85592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University