View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_152 (Length: 215)

Name: NF18993_low_152

Description: NF18993

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18993_low_152

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 185; E-Value: 1e-100

Query Start/End: Original strand, 15 - 199

Target Start/End: Original strand, 49446130 - 49446314

Alignment:

Q	15	tgagatgaaggattttgaggcagggaagtctaatggaagtaaagcccttcacagagaaacgctgaaatttgagaacaacaagagtcttgcagctgagaat	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	49446130	tgagatgaaggattttgaggcagggaagtctaatggaagtaaagcccttcacagagaaacgctgaaatttgagaacaacaagagtcttgcagctgagaat	49446229	T

Q	115	gctaataggcaatttaggaccaccaccaaacatagtatccacaaggagatcaatggtctcaactccgctttgtacaacatggttg	199	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	49446230	gctaataggcaatttaggaccaccaccaaacatagtatccacaaggagatcaatggtctcaactccgctttgtacaacatggttg	49446314	T

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Target: chr3; HSP #2

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 21 - 129

Target Start/End: Original strand, 17642084 - 17642192

Alignment:

Q	21	gaaggattttgaggcagggaagtctaatggaagtaaagcccttcacagagaaacgctgaaatttgagaacaacaagagtcttgcagctgagaatgctaat	120	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\| \| \|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \| \| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|
T	17642084	gaaggattttgagggagaggagtctaaagaaagaaaaccccttcacagcgaacccataaaactcgagaacaacaagagtcctgcaggttagaatgctaac	17642183	T

Q	121	aggcaattt	129	Q
		\| \|\|\|\|\|\|\|
T	17642184	aagcaattt	17642192	T

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