View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_low_153 (Length: 213)
Name: NF18993_low_153
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_153 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 26837637 - 26837468
Alignment:
| Q |
20 |
aatcttagtatgaagtagaagatagagggtgtgatttcgtcgctcaacacaatgatgtcatactatgatgttcatcattcaatggaatgtatttgctgtc |
119 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | || |||||||||||||||||||| ||| |
|
|
| T |
26837637 |
aatcttagtatgaagcagaagatagagggtgtgatttcgtcgctcaacacaattatgtcatactaagatatgaataattcaatggaatgtatttgccgtc |
26837538 |
T |
|
| Q |
120 |
atataagttactgatgtgttgaaggtaaatgggcaattgtcatggtaaggcatcttaatgtttatttggg |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| |
|
|
| T |
26837537 |
atataagttactgatgtgttgaaggtaaatgggcaactgtcatggtatggcatcttaatggttatttggg |
26837468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 2388030 - 2387885
Alignment:
| Q |
22 |
tcttagtatgaagtagaagatagagggtgtgatttcgtcgctcaacacaatgatgtcatacta-tgatgttcatcattcaatggaatgtatttgctgtca |
120 |
Q |
| |
|
||||| |||||||||| | |||||||||||| |||||| ||||| | |||||||| |||| | | ||| | | |||||||||||||||||| ||||| |
|
|
| T |
2388030 |
tcttactatgaagtaggaaatagagggtgtgctttcgttgctcaggaaaatgatgtgatacaaattatg--cctaattcaatggaatgtattttctgtcc |
2387933 |
T |
|
| Q |
121 |
tataagttactg-atgtgttgaaggtaaatgggcaattgtcatggtaa |
167 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||| | ||| ||| ||||||| |
|
|
| T |
2387932 |
tataagttactgaatgcgtttaaggtaaattgacaactgttatggtaa |
2387885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University