View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_19 (Length: 481)
Name: NF18993_low_19
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 14 - 464
Target Start/End: Original strand, 41759767 - 41760210
Alignment:
| Q |
14 |
atattcatcacatggtgaagtctaaccttttccactgaacacaataagcacatagtattatcaattgaaaagtctttaaattattttcagaaaccaacaa |
113 |
Q |
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| T |
41759767 |
atattcatcacatggtgaagtctaaccttttccactgaacacaataagcacatagtattatcaattgaaatgtctttaaattattttcagaaaccaacaa |
41759866 |
T |
|
| Q |
114 |
aaataataatagaatcaccctctccagtacacaccacaccagtcaccactatatataatgaggccttcctggctttaattcaccaaaccatcatatctca |
213 |
Q |
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| T |
41759867 |
aaataataatagaatcaccctctccagtacacacca-----gtcaccactatatataatgaggccttcctggctttaattcaccaaaccatcatatctca |
41759961 |
T |
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| Q |
214 |
ctacttacaatctaccaaacctcatttcattctctttctttacagagtgaacactatggacaatatgtgtcaactaaatttccaaaatatatcaacactg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41759962 |
ctacttacaatctaccaaacctcatttcattctctttcttta--gagtgaacactatggacaatatgtgtcaactaaatttccaaaatatatcaacactg |
41760059 |
T |
|
| Q |
314 |
actcaagggatgaaaactcattcccatcttatgaaatttacacaaatattcatttcactatctgtgttttgcttcatcttttcaccttcttccttgtttg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41760060 |
actcaagggatgaaaactcattcccatcttatgaaatttacacaaatattcatttcactatctgtgttttgcttcatcttttcaccttcttccttgtttg |
41760159 |
T |
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| Q |
414 |
ttttccttcattactttaaattatatttctctactctcccttttcaactct |
464 |
Q |
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| T |
41760160 |
ttttccttcattactttaaattatatttctctactctcccttttcaactct |
41760210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 256 - 464
Target Start/End: Original strand, 41794854 - 41795062
Alignment:
| Q |
256 |
cagagtgaacactatggacaatatgtgtcaactaaatttccaaaatatatcaacactgactcaagggatgaaaactcattcccatcttatgaaatttaca |
355 |
Q |
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|||||| |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
41794854 |
cagagtaaacactatggacaatatgtgtcgattaaaattccaaaatatatcaacactgactcaagggatgaaaactcattcaaatctaatgaaatttaca |
41794953 |
T |
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| Q |
356 |
caaatattcatttcactatctgtgttttgcttcatcttttcaccttcttccttgtttgttttccttcattactttaaattatatttctctactctccctt |
455 |
Q |
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|||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| | |||| |
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| T |
41794954 |
caaatattcatttcactatctgtgttttccttcatttgttcaccttcttccttgtttgttatccttcactactttaaattatatttctctacttttcctt |
41795053 |
T |
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| Q |
456 |
ttcaactct |
464 |
Q |
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|||||||| |
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| T |
41795054 |
ctcaactct |
41795062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 41794762 - 41794831
Alignment:
| Q |
148 |
cacaccagtcaccactatatataatgaggccttcctggctttaattcaccaaaccatcatatctcactac |
217 |
Q |
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||||||| ||| |||||||||||||||| | ||| || | |||||||||||||||||| ||||||||||| |
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| T |
41794762 |
cacaccaatcagcactatatataatgagtcattcatgcccttaattcaccaaaccatcctatctcactac |
41794831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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