View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_2 (Length: 679)
Name: NF18993_low_2
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 657; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 1 - 661
Target Start/End: Complemental strand, 15807162 - 15806502
Alignment:
| Q |
1 |
aaatacaaccacaatacataatgtttccgatttaacttcagtattgagatagaaaactatcattcccaattacatatatacaacaaagagaagaaatatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15807162 |
aaatacaaccacaatacataatgtttccgatttaacttcagtattgagatagaaaactatcattcccaattacatatatacaacaaagagaagaaatatg |
15807063 |
T |
|
| Q |
101 |
gtaatcatagttatataccatatagcaaattataaagtagttaaacaaatgataaaaagatctaaattcaaggaggtgctgatttcattttggtatagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15807062 |
gtaatcatagttatataccatatagcaaattataaagtagttaaacaaatgataaaaagatctaaattcaaggaggtgctgatttcattttggtatagtg |
15806963 |
T |
|
| Q |
201 |
ctcttggagtctcttgcaattccaattgaatttttgttctttcttttcaaggagagaagttttctcaaggatttttaaagtattggatgatagagttttt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15806962 |
ctcttggagtctcttgcaattccaattgaatttttgttctttcttttcaaggagagaagttttctcaaggatttttaaagtattggatgatagagttttt |
15806863 |
T |
|
| Q |
301 |
gatttctttcagaatgtcgaccattttttcttgacatttcgaacaagtatctttcaagacagacttttcttgatgaagcttatttacttgctccttaagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15806862 |
gatttctttcagaatgtcgaccattttttcttgacatttcgaacaagtatctttcaagacagacttttcttgatgaagcttatttacttgctccttaagt |
15806763 |
T |
|
| Q |
401 |
aattgaatttgtttctttgaagattttagtgaactaagtaagacccaaaacttgtttctcagatagttcatcaaccctacctccgattttgaataataaa |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15806762 |
aattgaatttgtttctttgaagattttagtgaactaagtaagacccaaaacttgtttctcagatagttcatcaaccctatctccgattttgaataataaa |
15806663 |
T |
|
| Q |
501 |
tgttttaacttttctctacagtttgtgtgatttggaagatatttcaaaaggttacttgaaaaaactatatgtcttaagtcatcaagcagtgtatttattg |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15806662 |
tgttttaacttttctctacagtttgtgtgatttggaagatatttcaaaaggttacttgaaaaaactatatgtcttaagtcatcaagcagtgtatttattg |
15806563 |
T |
|
| Q |
601 |
attccctctcgacttgagtagcttctgctcggtttgcatctctgcagcttgttatactttt |
661 |
Q |
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| T |
15806562 |
attccctctcgacttgagtagcttctgctcggtttgcatctctgcagcttgttatactttt |
15806502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 3387029 - 3387440
Alignment:
| Q |
1 |
aaatacaaccacaatacataatgtttccgatttaacttcagtattgagatagaaaactatcattcccaattacatatatacaacaaagagaagaaatatg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| |
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| T |
3387029 |
aaatacaaccacaatacataaagtttccgatttaacttcaatattgagatagaaaactatcattcccaattacata----caaccaagagaagaattatg |
3387124 |
T |
|
| Q |
101 |
gtaatcatagttatataccatatagcaaattataaagtagttaaacaaatgataaaaagatctaaattca---aggaggtgctgatttcattttggtata |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3387125 |
gtaatcatagttatataccatatagcaaattataaagtagttaatcaaatgataaaaagatctaaattcagaaaggaggtgctgatttcattttggtata |
3387224 |
T |
|
| Q |
198 |
gtgctcttggagtctcttgcaattccaattgaatttttgttctttcttttcaaggagagaagttttctcaaggatttttaaagtattggatgatagagtt |
297 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||||| ||||||| ||| |||||| | |
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| T |
3387225 |
gtgctcttggagtctcttacaattaaaattgaatttttgttctttcttttcaaggtgaattgttttctcaaggatttccaaagtatcggaagataga-ct |
3387323 |
T |
|
| Q |
298 |
tttgatttctttcagaatgtcgaccattttttcttgacatttcgaacaagtatctttcaagacagacttttcttgatgaagcttatttacttgctcctta |
397 |
Q |
| |
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|||||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||| ||| |||||||| ||||||||||||||||||||| | |
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| T |
3387324 |
tttgatttctttcagaatttcgaccatttttttttgacattttgaataagtatctttcaagagagatttttcttggagaagcttatttacttgctcctca |
3387423 |
T |
|
| Q |
398 |
agtaattgaatttgttt |
414 |
Q |
| |
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||||||||||||||||| |
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| T |
3387424 |
agtaattgaatttgttt |
3387440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 450 - 636
Target Start/End: Original strand, 3387651 - 3387836
Alignment:
| Q |
450 |
acttgtttctcagatagttcatcaaccctacctccgattttgaataataaatgttttaacttttctctacagtttgtgtgatttggaagatatttcaaaa |
549 |
Q |
| |
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|||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3387651 |
acttgtttctcagacagttcatcaatcctatctccgattttgaataataaacgttttaacttttctctacggtttgtgtgatttggaagatatttcaaaa |
3387750 |
T |
|
| Q |
550 |
ggttacttgaaaaaactatatgtcttaagtcatcaagcagtgtatttattgattccctctcgacttgagtagcttctgctcggtttg |
636 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||| |
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| T |
3387751 |
ggttacttgaaaaaactatatgtctcaagtcatcaagcagtg-attgattgattccctctcaacttgagtagcttctgatcggtttg |
3387836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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