View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_20 (Length: 471)
Name: NF18993_low_20
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 12 - 456
Target Start/End: Original strand, 8446440 - 8446884
Alignment:
| Q |
12 |
catcatccaaataaagaaaaggagccatgtcaacaatcacgatagaaagtgaaaaatattataaaatgcatagaaagcatagtactggtcgttattaatc |
111 |
Q |
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| T |
8446440 |
catcatacaaataaagaaaaggagccatgtcaacaatcacgatagaaattgaaaaatattataaaatgcatagaaagcatagtactggtcgttattaatc |
8446539 |
T |
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| Q |
112 |
tgctgatctaacgtctatgagtgcgggggtaaaaggaaatgggacttgctccggtctgaaaaaatctcgcattcaagcattagggacatggctggactgt |
211 |
Q |
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| T |
8446540 |
tgctgatctaacgtctatgagtgcgggggtaaaaggaaatgggacttgctccggtctgaaaaaatctcgcattcaagcattagggacatggttggactgt |
8446639 |
T |
|
| Q |
212 |
ttggtctagaatatcaaagagctaccaatgttccaaatgtgtgaatgtgattaatgaatcaaggttttgggtacaaatcgatgacctttttccacgactc |
311 |
Q |
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| T |
8446640 |
ttggtctagaatatcaaagagctaccaatgttccaaatgtgtgaatgtgattaatgaatcaaggttttgggtacaaatcgatgacctttttccacgactc |
8446739 |
T |
|
| Q |
312 |
acgtgtggatatttccgtccaccaccttgacacattgtttcttgacgaagaagtaaacaaatcagcggtgtcggcatcagcagcagccaccaagtagtga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8446740 |
acgtgtggatatttccgtccaccaccttgacacattgtttcttgacgaagaagtaaacaaatcagcggtgtcggcatcagcagcagccaccaagtagtga |
8446839 |
T |
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| Q |
412 |
atattgggaagatgtgaaaggtcggcaagtgtgaactcatcacca |
456 |
Q |
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| T |
8446840 |
atattgggaagatgtgaaaggtcggcaagtgtgaattcatcacca |
8446884 |
T |
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