View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_21 (Length: 464)
Name: NF18993_low_21
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 6220602 - 6220313
Alignment:
| Q |
11 |
cagagagaaataataagggtaattaataacagttaaaaatggttgtggtacataatgcataatatatcatgtgttaaatgagacaattcactgaaaatac |
110 |
Q |
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| T |
6220602 |
cagagagaaataataagggt---taataacagttaaaaatggttgtggtacataatgcata-----tcatgtgttaaatgagacaattcactgaaaatac |
6220511 |
T |
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| Q |
111 |
aacttttgccattgacttgtcagcatgtatatggctttattatcctggaactttgccagccctttttctggggtcctcatttgcttcagtccaatatttc |
210 |
Q |
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| T |
6220510 |
aacttttgccattgacttgtcagcatgtatatggctttattatcctggaactttgccagccctttttctggggtcctcatttgcttcagtccaatatttc |
6220411 |
T |
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| Q |
211 |
tgagagctcgcaaagcacttatcaatgaccaatatgtttggatccacgtttgaaatctcttcaacgtatgccaactttgaacgtgatatattgttttta |
309 |
Q |
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| T |
6220410 |
agagagctagcaaagcacttatcaatgaccaatatgtttggatccac-attgaaatcccttcaacgtatgccaactttgaacgtgatatattgttttta |
6220313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 310 - 448
Target Start/End: Complemental strand, 6220335 - 6220196
Alignment:
| Q |
310 |
ttgaacgtgatatattgtttttaaaacggtgtttggttgcnnnnnnngac-gaagtgcttttgcgctatagaatcaagctcgtatttggagattctaggg |
408 |
Q |
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| T |
6220335 |
ttgaacgtgatatattgtttttaaaacggtgtttgggtgcaaaaaaaaaaagaagtgcttttgcgctatagaatcaagctcgtatttggagattctaggg |
6220236 |
T |
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| Q |
409 |
caactagaatcaattctagtatatatttgtctgacacaat |
448 |
Q |
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| T |
6220235 |
caactagaatcaattctagtatatatttgtctgacacaat |
6220196 |
T |
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