View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_low_23 (Length: 461)
Name: NF18993_low_23
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_23 |
 |  |
|
| [»] scaffold0072 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 29 - 455
Target Start/End: Complemental strand, 65175 - 64749
Alignment:
| Q |
29 |
aagtggttttgaattccttgtcttaacattattttctctttccttgttataacgtgcatcaagagccttctcatattgtgtcacaaacttgctcaatgga |
128 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
65175 |
aagtggttttgaattccttgtcttgacattcttctctctttccttgttataacgtgtgtcaagagtcttctcatactgtatcacaaacttgctcaatgga |
65076 |
T |
 |
| Q |
129 |
gtacttgaattcaaaaagcccttaaaaaatttattcatactttcactcctttgggtggtggacattccagcacaaaaattgtgacatacataggaatgaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| ||| ||| |
|
|
| T |
65075 |
gtacttgaattcaaaaagcccttaaaaaatttattcatactttcactcctttgggtggtggacattccagcacaaaaactctgacgtacataagaaggaa |
64976 |
T |
 |
| Q |
229 |
tccactttgctcgaatggtgtagatcttctttagccatttgttatcttgcaactcgtacttatccatcattgctccccaatcagaatcaaagtcatcagt |
328 |
Q |
| |
|
||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
64975 |
cccatttttctcgaatggagtagatcttctttagccatttgttatcttgcaactcgtacttatctatcattgctccccaatcagaatcaaagtcataaga |
64876 |
T |
 |
| Q |
329 |
agtgatagtttggtgaatgcacttgtgaaattgatttttaaacttactatgttcatgatagatttggttcaagtactctggaactttcttctcaatatgc |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
64875 |
agtgatagtttggtgaatgcacttgtgaaattgatttttaaactcgctatgttgatgatagatttggttcaagtactctggaactttcttctcaatatgc |
64776 |
T |
 |
| Q |
429 |
cacatacaataatgatgattcatctct |
455 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
64775 |
cacatacaataatgatgattcacctct |
64749 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 22639821 - 22639403
Alignment:
| Q |
18 |
aaagtgcgcaaaagtggttttgaattccttgtcttaacattattttctctttccttgttataacgtgcatcaagagccttctcatattgtgtcacaaact |
117 |
Q |
| |
|
||||| ||||||| |||||||||||| ||||||| | | | || || || |||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22639821 |
aaagttcgcaaaaatggttttgaattgattgtcttgaaagtcttctccctctccttgttgtaacgtgcatcaagagccttgtcatattgtgtcacaaact |
22639722 |
T |
 |
| Q |
118 |
tgctcaatggagtacttgaatt--caaaaagcccttaaaaaatttattcatactttcactcctttgggtggtggacattccagcacaaaaattgtgacat |
215 |
Q |
| |
|
||||||||||||||| || || ||||| ||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||| || | |
|
|
| T |
22639721 |
tgctcaatggagtaccagagttaaaaaaaaatccttaaagaacttattcatactttcactcctttgagtagtggacattccagcacaaaaattgttacgt |
22639622 |
T |
 |
| Q |
216 |
acataggaatgaatccactttgctcgaatggtgtagatcttctttagccatttgttatcttgcaactcgtacttatccatcattgctccccaatcagaat |
315 |
Q |
| |
|
||||| | | ||||||| ||| ||| ||| | ||| ||||| | ||||| |||||||||||| | |||||||| ||||||||| ||||||||| |
|
|
| T |
22639621 |
acataagcaggaatccatttttctctaatagagtatatcttttgaagccaccgattatcttgcaacccatacttatctatcattgcttcccaatcag--- |
22639525 |
T |
 |
| Q |
316 |
caaagtcatcagtagtgatagtttggtgaatgcacttgtgaaattgatttttaaacttactatgttcatgatagatttggttcaagtactctggaacttt |
415 |
Q |
| |
|
| ||||||| | ||||||||| ||||||| ||||||| ||||||| | ||| |||||||||| ||||| | ||||||||||||||||||| |
|
|
| T |
22639524 |
----------attagtgattgattggtgaatacacttgtaaaattgacttttaaaatcactgtgttcatgatggatttcgctcaagtactctggaacttt |
22639435 |
T |
 |
| Q |
416 |
cttctcaatatgccacatacaataatgatgatt |
448 |
Q |
| |
|
|| ||||| |||||||||| ||||||||||| |
|
|
| T |
22639434 |
-ttttcaatgcgccacatacagtaatgatgatt |
22639403 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 51167183 - 51166750
Alignment:
| Q |
18 |
aaagtgcgcaaaagtggttttgaattccttgtcttaacattattttctctttccttgttataacgtgcatcaagagccttctcatattgtgtcacaaact |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| || ||||||| |||||||||| ||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
51167183 |
aaagtacgcaaaagtggttttgaattccttgtcttgacattcttctctctttgcttgttataatgtgtgtcaagagccttctcatactgtatcacaaact |
51167084 |
T |
 |
| Q |
118 |
tgctcaatggagtacttgaattcaaaaagcccttaaaaaatttattcatactttcactcctttgggtggtggacattccagcacaaaaattgtgacatac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |
|
|
| T |
51167083 |
tgctcaatggagtacttgaattcaaaaagcccttaaaaaatttattcatactttcactcctttgggtggtggacattccagcacaaaaactccgacgtac |
51166984 |
T |
 |
| Q |
218 |
ataggaatgaatccactttgctcgaatggtgtagatcttctttagccatttgttatcttgcaactcgtacttatccatcattgctccc-caatcagaatc |
316 |
Q |
| |
|
||| ||| ||| ||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
51166983 |
ataagaaggaacccatttttctcgaatggagtagatattctttagccatttgttatcttgcaactcgtacttatttatcattgctcccgaaatcagaatc |
51166884 |
T |
 |
| Q |
317 |
aaagtcatcagtagtgatagtttggtgaatgcacttgtgaaattgatttttaaacttactatgttcatgatagatttggttcaagtactctggaactttc |
416 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51166883 |
aaagtcatcataagtgatagtttggtgaatgcacttgtgaaattgatttttaaactcgccatgttcatgatagatttggttcaagtactctggaacttta |
51166784 |
T |
 |
| Q |
417 |
ttctcaatatgccacatacaataatgatgattca |
450 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
51166783 |
ttctcgatatgccacatacaataatgatgattca |
51166750 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 333 - 455
Target Start/End: Complemental strand, 16081234 - 16081112
Alignment:
| Q |
333 |
atagtttggtgaatgcacttgtgaaattgatttttaaacttactatgttcatgatagatttggttcaagtactctggaactttcttctcaatatgccaca |
432 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16081234 |
atagtttggcgaatgcacttctgaaattgatttttaaactcactatgttcatgatagatttggttcaagtactctggaactttcttctgaatatgccaca |
16081135 |
T |
 |
| Q |
433 |
tacaataatgatgattcatctct |
455 |
Q |
| |
|
||||||| |||||||||| |||| |
|
|
| T |
16081134 |
tacaatagtgatgattcacctct |
16081112 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 48775694 - 48775482
Alignment:
| Q |
18 |
aaagtgcgcaaaagtggttttgaattccttgtcttaacattattttctctttccttgttataacgtgcatcaagagccttctcatattgtgtcacaaact |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48775694 |
aaagtgcgcaaaagtggttttgaattccttgtcttaacattcttctctctttccttgttataacgtgcatcaagagccttctcatattgtgtcacaaact |
48775595 |
T |
 |
| Q |
118 |
tgctcaatggagtacttgaattcaaaaagcccttaaaaaatttattcatactttcactcctttgggtggtggacattccagcacaaaaattgtgacatac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
48775594 |
tgctcaatggagtacttgaattcaaaaagcccttaaaaaatttattcatactttcactcctttgggtggtggacattccaacacaaaaattgtgacgtac |
48775495 |
T |
 |
| Q |
218 |
ataggaatgaatc |
230 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
48775494 |
ataagaaggaatc |
48775482 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 226 - 455
Target Start/End: Complemental strand, 48773443 - 48773214
Alignment:
| Q |
226 |
gaatccactttgctcgaatggtgtagatcttctttagccatttgttatcttgcaactcgtacttatccatcattgctccccaatcagaatcaaagtcatc |
325 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
48773443 |
gaatccactttgctcgaatggagtagatcttctttagccatttgttatcttgcaactcataattatctatcattgctccccaataagaatcaaagtcata |
48773344 |
T |
 |
| Q |
326 |
agtagtgatagtttggtgaatgcacttgtgaaattgatttttaaacttactatgttcatgatagatttggttcaagtactctggaactttcttctcaata |
425 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48773343 |
agtagtgatagtttgatgaatgcacttgtgaaattgatttttaaacttactatgttcatgataaatttggttcaagtactctcgaactttcttctcaata |
48773244 |
T |
 |
| Q |
426 |
tgccacatacaataatgatgattcatctct |
455 |
Q |
| |
|
|||||||||||||| |||||||||| |||| |
|
|
| T |
48773243 |
tgccacatacaatagtgatgattcacctct |
48773214 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 44884859 - 44885289
Alignment:
| Q |
18 |
aaagtgcgcaaaagtggttttgaattccttgtcttaacattattttctctttccttgttataacgtgcatcaagagccttctcatattgtgtcacaaact |
117 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| ||| | || || ||||||| ||| ||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
44884859 |
aaagttcgcaaaagtggttttgaattcattgtcttgacagttttctccctttcctcgttgtaacgtgcatcaagagctttctcatattgtgtcagaaact |
44884958 |
T |
 |
| Q |
118 |
tgctcaatggagtacttgaattcaaaaagcccttaaaaaatttattcatactttcactcctttgggtggtggacattccagcacaaaaattgtgacatac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||| |
|
|
| T |
44884959 |
tgctcaatggagtacttgaattcaaaaaatccttaaaaaatttattcatactttcactcctttgagtggtggacattccagcacagaaattatgatgtac |
44885058 |
T |
 |
| Q |
218 |
ataggaatgaatccactttgctcgaatggtgtagatcttctttagccatttgttatcttgcaactcgtacttatccatcattgctccccaatcagaatca |
317 |
Q |
| |
|
||| | | ||||||| || | |||||| | ||| ||||| | |||||| | |||||||||||| | || ||||| | ||||||| |||| ||||| ||| |
|
|
| T |
44885059 |
atatgcaggaatccatttggatcgaattgagtatatcttttctagccactgattatcttgcaacccatatttatcaaccattgcttcccattcagagtca |
44885158 |
T |
 |
| Q |
318 |
aagtcatcagtagtgatagtttggtgaatgcacttgtgaaattgatttttaaacttactatgttcatgatagatttggttcaagtactctggaactttct |
417 |
Q |
| |
|
|| || ||| | || |||| ||||||||||||||||| ||| ||||||||||| | ||| ||| |||||||||| || | || || |||||||||||| | |
|
|
| T |
44885159 |
aattcttcaattgtaatagattggtgaatgcacttgtaaaaatgatttttaaattcactgtgtccatgatagatatgatccatgtgctctggaacttttt |
44885258 |
T |
 |
| Q |
418 |
tctcaatatgccacatacaataatgatgatt |
448 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |
|
|
| T |
44885259 |
cctcaatatgccacatgcaataatggtgatt |
44885289 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 4e-79; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 26 - 267
Target Start/End: Complemental strand, 19330068 - 19329827
Alignment:
| Q |
26 |
caaaagtggttttgaattccttgtcttaacattattttctctttccttgttataacgtgcatcaagagccttctcatattgtgtcacaaacttgctcaat |
125 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||| ||||||||| || |||||||||| | |||| |
|
|
| T |
19330068 |
caaaagtggttttgaattccttgtcttgacattcttcgctctttccttgatataacgtgcatcaagagtcttctcatacagtatcacaaactttcacaat |
19329969 |
T |
 |
| Q |
126 |
ggagtacttgaattcaaaaagcccttaaaaaatttattcatactttcactcctttgggtggtggacattccagcacaaaaattgtgacatacataggaat |
225 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
19329968 |
ggagtacttgaattcaaaaagccctgaaaaattttattcatagtttcactcctgtgggtggtggacattccagcacaaaaattgccacgtacataggagg |
19329869 |
T |
 |
| Q |
226 |
gaatccactttgctcgaatggtgtagatcttctttagccatt |
267 |
Q |
| |
|
||||||| ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
19329868 |
gaatccattttgctcgaatggagtatatcttctttagccatt |
19329827 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 8833011 - 8833122
Alignment:
| Q |
67 |
tttccttgttataacgtgcatcaagagccttctcatattgtgtcacaaacttgctcaatggagtacttgaattcaaaaagcccttaaaaaatttattcat |
166 |
Q |
| |
|
|||||||||| |||| | ||||||||||||| |||| |||||||||||| || |||||||||||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
8833011 |
tttccttgttgtaacattcatcaagagccttttcatgttgtgtcacaaattttctcaatggagtacttgaattgaaaaaatccttaaaaaagttattcat |
8833110 |
T |
 |
| Q |
167 |
actttcactcct |
178 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8833111 |
actttcactcct |
8833122 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 267
Target Start/End: Original strand, 8831558 - 8831762
Alignment:
| Q |
60 |
ttttctctttccttgttataacgtgcatcaagagccttctcatattgtgtcacaaacttgctcaatggagtacttgaattcaaaaagcccttaaaaaatt |
159 |
Q |
| |
|
|||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||||| | | || |||||||||||| ||||| ||||||||| | |
|
|
| T |
8831558 |
ttttctttttcctggttgtaacgtgcatcaagagccttttcatattgtgtcacaaactttttgattgaagtacttgaatt-aaaaaattcttaaaaaact |
8831656 |
T |
 |
| Q |
160 |
tattcatactttcactcctttgggtggtggacattccagcacaaaaattgtgacatacataggaatgaatccactttgctcgaatggtgtagatcttctt |
259 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||| ||||||||| |||||| ||||| | |||||| ||||||||||||| ||| || ||||| |
|
|
| T |
8831657 |
cattcatactttcactcctttgtgtggtagatattttggcacaaaaaatgtgacgtacat--ctagaaatccattttgctcgaatggagtatatattctt |
8831754 |
T |
 |
| Q |
260 |
tagccatt |
267 |
Q |
| |
|
|| ||||| |
|
|
| T |
8831755 |
tacccatt |
8831762 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 8832079 - 8832237
Alignment:
| Q |
60 |
ttttctctttccttgttataacgtgcatcaagagccttctcatattgtgtcacaaacttgctcaatggagtacttgaattcaaaaagcccttaaaaaatt |
159 |
Q |
| |
|
|||||| ||| || ||| |||||||||||||||| ||| | |||||||||||||||||| | | || |||||||||||| ||||| || |||||||| | |
|
|
| T |
8832079 |
ttttcttttttctggttgtaacgtgcatcaagagtctttttatattgtgtcacaaactttttgattgaagtacttgaattaaaaaatcc-ttaaaaaact |
8832177 |
T |
 |
| Q |
160 |
tattcatactttcactcctttgggtggtggacattccagcacaaaaattgtgacatacat |
219 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| | ||||||||| | |||| ||||| |
|
|
| T |
8832178 |
cattcatactttcactcctttgtgtggtagacatttcggcacaaaaaatttgacgtacat |
8832237 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 206
Target Start/End: Original strand, 8835273 - 8835421
Alignment:
| Q |
60 |
ttttctctttccttgttataacgtgcatcaagagccttctcatattgtg--tcacaaacttgctcaatggagtacttgaattcaaaaagcccttaaaaaa |
157 |
Q |
| |
|
|||||| |||||| ||| |||||||||||||||||||| | |||||||| |||||||||| | | || |||||||||||| ||||| || | |||||| |
|
|
| T |
8835273 |
ttttctttttcctggttgtaacgtgcatcaagagcctttttatattgtgtgtcacaaactttttgattgaagtacttgaattaaaaaatccttaaaaaaa |
8835372 |
T |
 |
| Q |
158 |
tttattcatactttcactcctttgggtggtggacattccagcacaaaaa |
206 |
Q |
| |
|
| ||||||||||||||||||||| ||||| |||||| | ||||||||| |
|
|
| T |
8835373 |
ctcattcatactttcactcctttgtgtggtagacatttcggcacaaaaa |
8835421 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 367 - 446
Target Start/End: Complemental strand, 19329789 - 19329710
Alignment:
| Q |
367 |
taaacttactatgttcatgatagatttggttcaagtactctggaactttcttctcaatatgccacatacaataatgatga |
446 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19329789 |
taaactcactatgttcatgctagatatggtttaagtactctagaactttcttctcattatgccacatacaataatgatga |
19329710 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 8628225 - 8628036
Alignment:
| Q |
25 |
gcaaaagtggttttgaattccttgtcttaacattat-tttctctttccttgttataacgtgcatcaagagccttctcatattgtgtcacaaacttgctca |
123 |
Q |
| |
|
|||||||||| |||||||| |||| ||| | | | | ||| ||||||||| || |||||||||||||||||||| ||||| | | | | |||| |||| |
|
|
| T |
8628225 |
gcaaaagtggctttgaatttcttgcctttaaagtttctttatctttccttattttaacgtgcatcaagagccttttcatactatctta---actttctca |
8628129 |
T |
 |
| Q |
124 |
at---ggagtacttgaattcaaaaagcccttaaaaaatttattcatactttcactcctttgggtggtggacattccagcacaaaaattgtgac |
213 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||| |||||| ||||||| ||||||| ||||| | |||| ||||||||||||||||| |
|
|
| T |
8628128 |
atattggagtacttgaattcaaaaaatccttaaaaaaattattcttactttctctcctttatgtggtaggcattgtagcacaaaaattgtgac |
8628036 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 8835551 - 8835600
Alignment:
| Q |
338 |
ttggtgaatgcacttgtgaaattgatttttaaacttactatgttcatgat |
387 |
Q |
| |
|
||| ||||||||||||| || |||||||||||| | |||||||||||||| |
|
|
| T |
8835551 |
ttgttgaatgcacttgtaaatttgatttttaaattcactatgttcatgat |
8835600 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 44 - 4
Alignment:
| Q |
18 |
aaagtgcgcaaaagtggttttgaattccttgtcttaacatt |
58 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44 |
aaagtgcgcaaaagtggttttgaattccttgtcttaacatt |
4 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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