View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_26 (Length: 457)

Name: NF18993_low_26
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_26
NF18993_low_26
[»] chr4 (8 HSPs)
chr4 (16-439)||(27465585-27466008)
chr4 (20-438)||(27472669-27473081)
chr4 (57-334)||(33832661-33832939)
chr4 (44-245)||(37918827-37919029)
chr4 (177-263)||(50960623-50960709)
chr4 (177-263)||(22504795-22504881)
chr4 (177-263)||(46595849-46595935)
chr4 (181-260)||(37074906-37074985)
[»] chr6 (1 HSPs)
chr6 (177-268)||(13327110-13327201)
[»] chr8 (2 HSPs)
chr8 (177-334)||(36998735-36998892)
chr8 (177-263)||(43734862-43734948)
[»] chr2 (2 HSPs)
chr2 (177-263)||(38504178-38504264)
chr2 (177-263)||(34770372-34770458)
[»] chr7 (5 HSPs)
chr7 (177-263)||(44265438-44265524)
chr7 (177-268)||(42359397-42359488)
chr7 (177-259)||(6998660-6998742)
chr7 (177-266)||(7927163-7927251)
chr7 (177-260)||(45184521-45184604)
[»] chr5 (1 HSPs)
chr5 (181-263)||(19501-19583)
[»] chr3 (1 HSPs)
chr3 (177-268)||(36498660-36498751)


Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Original strand, 27465585 - 27466008
Alignment:
Q  16 ataagtggatccaaacactcgaataggaacaaaataaaggaggtccttatgaaacaagtaaaatgtggaatcacattatccaatattgaaaatgacttgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27465585 ataagtggatccaaacactcgaataggaacaaaataaaggaggtccttatgaaacaagtgaaatgtggaatcacattatccaatattgaaaatgacttgt 27465684  T
Q  116 agttgatcaaataacagacggtgaaaagtgcaatacctcaaattttgaaagaagcatgaaaattgatcaataaggtacgagctgtatcaactagatgacg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27465685 agttgatcaaataacagacggtgaaaagtgcaatacctcaaattttgaaagaagcatgagaattgatcaataaggtacgagctgtatcaactagatgacg 27465784  T
Q  216 atgttttcgctcagcgatactattttgttgtcgtgtgtgtggacaactagacttatggtttgtgccctgagaagtcaagaagaagttgcatcgtgaagaa 315  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27465785 atgtttccgctcagcgatactattttgttgtcgtgtgtgtggacaactagacttatggtttgtgccctgagaagtcaagaagaagttgcatcgtgaagaa 27465884  T
Q  316 aagaattctttggcattgtaactaacaattataagagctggtaatcgaaagcccattttatgtgcttatttgggaaaagaagaacagatcaaagatataa 415  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27465885 aagaattctttggcattgtaactaacacttataagagcgggtaatcgaaagcccattttatgtgcttatttgggaaaagaagaacagagcaaagatataa 27465984  T
Q  416 atatattaagaaggatgtaactaa 439  Q
    ||||||||||||||||||||||||    
T  27465985 atatattaagaaggatgtaactaa 27466008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 438
Target Start/End: Original strand, 27472669 - 27473081
Alignment:
Q  20 gtggatccaaacactcgaataggaacaaaataaaggaggtccttatgaaacaagtaaaatgtggaatcacattatccaatattgaaaatgacttgtagtt 119  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||    
T  27472669 gtggatccaaacactcgaataggaacaaaatacaggaggtccttatgaaacaagagaaatgtcgaatcacattatccaatattgaaaatgacttgtagtt 27472768  T
Q  120 gatcaaataacagacggtgaaaagtgcaatacctcaaattttgaaagaagcatgaaaattgatcaataaggtacgagctgtatcaactagatgacgatgt 219  Q
    |||| || |||||||| ||| ||||||||||||||||||||||||||| ||||||  | |||||||||||||||||||||||||     ||  ||||| |    
T  27472769 gatctaacaacagacgatgagaagtgcaatacctcaaattttgaaagatgcatgagcactgatcaataaggtacgagctgtatc-----gaatacgatat 27472863  T
Q  220 tttcgctcagcgatactattttgttgtcgtgtgtgtggacaactagacttatggtttgtgccctgagaagtcaagaagaagttgcatcgtgaagaaaaga 319  Q
    ||  ||||||| | |||||||||||||||||||||  |||||||||||||||| |||||||||||| | |||||| || |||| ||| ||||||||||||    
T  27472864 ttctgctcagcaacactattttgttgtcgtgtgtgcagacaactagacttatgatttgtgccctgaaaggtcaag-aggagtttcattgtgaagaaaaga 27472962  T
Q  320 attctttggcattgtaactaacaattataagagctggtaatcgaaagcccattttatgtgcttatttgggaaaagaagaacagatcaaagatataaatat 419  Q
    ||||||||||||||||||||||| |||||||||  ||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||    
T  27472963 attctttggcattgtaactaacacttataagagaaggtaatcaaaagcccattttatgtgcttattaggtaaaagaagaacagagcaaagatataaatat 27473062  T
Q  420 attaagaaggatgtaacta 438  Q
    |||||||||||| ||||||    
T  27473063 attaagaaggatttaacta 27473081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 57 - 334
Target Start/End: Complemental strand, 33832939 - 33832661
Alignment:
Q  57 ggtccttatgaaacaagtaa-aatgtggaatcacattatccaatattgaaaatgacttgtagttgatcaaataacagacggtgaaaagtgcaatacctca 155  Q
    |||||||| ||||||||  | ||||||||||| | |||||||| | |||  ||| | ||  |||||||||||||||| | || | ||  |||  ||| ||    
T  33832939 ggtccttaggaaacaagagagaatgtggaatctcgttatccaaaactgatgatggcatgcggttgatcaaataacaggctgtcagaaccgcatcacccca 33832840  T
Q  156 aattttgaaagaagcatgaaaattgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgt 255  Q
    || ||| ||||  ||||||  ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | || |||||||||  |||||||     
T  33832839 aaattttaaaggtgcatgagcattgatcaataaggttcgagctgtatcaactagatgacgatgtttccgctcagctaaaccattttgttgcggtgtgtgc 33832740  T
Q  256 ggacaactagacttatggtttgtgccctgagaagtcaagaagaagttgcatcgtgaagaaaagaattctttggcattgt 334  Q
    ||||||||||||| |||  |  | || |||||| |||| ||| ||||| || ||| ||||||| |||||||||||||||    
T  33832739 ggacaactagactgatgtatgataccatgagaaatcaaaaaggagttgaattgtgcagaaaagtattctttggcattgt 33832661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 245
Target Start/End: Original strand, 37918827 - 37919029
Alignment:
Q  44 acaaaataaaggaggtccttatgaaacaagtaa-aatgtggaatcacattatccaatattgaaaatgacttgtagttgatcaaataacagacggtgaaaa 142  Q
    |||||||| | | |||||||| ||||||||  | ||||||||||| |||||||||| | |||  ||| | ||| |||||||||||||||| | || | ||    
T  37918827 acaaaatacaaggggtccttaggaaacaagagagaatgtggaatctcattatccaaaactgatgatggcatgtggttgatcaaataacaggctgtcagaa 37918926  T
Q  143 gtgcaatacctcaaattttgaaagaagcatgaaaattgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttg 242  Q
      |||  ||| |||| ||| ||||  ||||||  ||||||||||||||| |||||||||||||||||||||||||||||  ||||||| | || ||||||    
T  37918927 ccgcatcaccccaaaattttaaaggtgcatgagcattgatcaataaggttcgagctgtatcaactagatgacgatgtttctgctcagctacaccattttg 37919026  T
Q  243 ttg 245  Q
    |||    
T  37919027 ttg 37919029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 50960709 - 50960623
Alignment:
Q  177 attgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggacaact 263  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||  || ||||  | |||||||||| ||||||| ||||||||    
T  50960709 attgatcaataaggttcgagctgtatcaactaaatgacgatgttttctttcggcgacgccattttgttgtggtgtgtggggacaact 50960623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 263
Target Start/End: Original strand, 22504795 - 22504881
Alignment:
Q  177 attgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggacaact 263  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| |  ||||| |  | |||||||||| ||||||| ||||||||    
T  22504795 attgatcaataaggttcgagctgtatcaactaaatgacgatgtttcctttcagcaacgccattttgttgtggtgtgtggggacaact 22504881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 263
Target Start/End: Original strand, 46595849 - 46595935
Alignment:
Q  177 attgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggacaact 263  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| |  |||| ||  | |||||||||| ||||||| ||||||||    
T  46595849 attgatcaataaggttcgagctgtatcaactaaatgacgatgtttcctttcagtgacgccattttgttgtggtgtgtggggacaact 46595935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 37074985 - 37074906
Alignment:
Q  181 atcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggaca 260  Q
    |||||||| || |||||||| ||||| | ||||||||||||||  ||||||| || |||||||||  ||||||| |||||    
T  37074985 atcaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtgtgtgaggaca 37074906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 13327110 - 13327201
Alignment:
Q  177 attgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggacaactagact 268  Q
    ||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||    
T  13327110 attgatcaataaggttcgagctgtatcaacaatatgacgatgttttcgctcagcgacaccattttgttgtggtgtgtgtggacaactagact 13327201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 334
Target Start/End: Complemental strand, 36998892 - 36998735
Alignment:
Q  177 attgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggacaactagacttatggttt 276  Q
    ||||||||||||||| ||||||| ||| ||||||||| ||||||| |||||||||| || |||||||||  ||||||||||||||||||||| |||  |     
T  36998892 attgatcaataaggttcgagctgcatctactagatgaagatgtttccgctcagcgacaccattttgttgcggtgtgtgtggacaactagactgatgtgtg 36998793  T
Q  277 gtgccctgagaagtcaagaagaagttgcatcgtgaagaaaagaattctttggcattgt 334  Q
     | || |||||| |||| ||| ||||  || ||| ||||||| |||||||||||||||    
T  36998792 ataccatgagaaatcaaaaaggagttaaattgtgtagaaaagtattctttggcattgt 36998735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 43734948 - 43734862
Alignment:
Q  177 attgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggacaact 263  Q
    ||||||||||||||| |||| ||||||||||| ||||| |||||| |  |||||||  | |||||||||| ||||||| ||||||||    
T  43734948 attgatcaataaggttcgagttgtatcaactaaatgacaatgtttcctttcagcgacgccattttgttgtggtgtgtggggacaact 43734862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 38504264 - 38504178
Alignment:
Q  177 attgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggacaact 263  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| |  |||||||  | |||||||||| ||||||| ||||||||    
T  38504264 attgatcaataaggttcgagctgtatcaactaaatgacgatgtttcctttcagcgacgccattttgttgtggtgtgtggggacaact 38504178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 177 - 263
Target Start/End: Original strand, 34770372 - 34770458
Alignment:
Q  177 attgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggacaact 263  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| |  ||||  |  | |||||||||| ||||||| ||||||||    
T  34770372 attgatcaataaggttcgagctgtatcaactaaatgacgatgtttcctttcagaaacgccattttgttgtggtgtgtggggacaact 34770458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 263
Target Start/End: Original strand, 44265438 - 44265524
Alignment:
Q  177 attgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggacaact 263  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||||||  ||| |||  | |||||||||| ||||||| ||||||||    
T  44265438 attgatcaataaggttcgagcagtatcaactaaatgacgatgttttctttcaacgacgccattttgttgtggtgtgtggggacaact 44265524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 42359397 - 42359488
Alignment:
Q  177 attgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggacaactagact 268  Q
    |||||||||||| || |||| ||| ||||| | ||||||||||||||  ||||||| || |||||||||  ||||||| |||||||| ||||    
T  42359397 attgatcaataaagttcgagttgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtgtgtgaggacaactggact 42359488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 6998742 - 6998660
Alignment:
Q  177 attgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggac 259  Q
    ||||||||||||||| | |||||||||||||| ||| |||||||| |  |||||||  | |||||||||| ||||||| ||||    
T  6998742 attgatcaataaggttcaagctgtatcaactaaatggcgatgtttcctttcagcgacgccattttgttgtggtgtgtggggac 6998660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 7927251 - 7927163
Alignment:
Q  177 attgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggacaactaga 266  Q
    ||||||||||||||| | |||||||||||||| || |||||| ||||  |||||||  | |||||||||| || |||| |||||||||||    
T  7927251 attgatcaataaggttcaagctgtatcaactaaattacgatg-tttctttcagcgacgccattttgttgtggtttgtggggacaactaga 7927163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 45184521 - 45184604
Alignment:
Q  177 attgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggaca 260  Q
    |||||||||||| || |||||||| ||||| | ||||||||||||||  |||| || || |||||||||  ||||||| |||||    
T  45184521 attgatcaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagtgacaccattttgttgcagtgtgtgaggaca 45184604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 19583 - 19501
Alignment:
Q  181 atcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggacaact 263  Q
    ||||||||||| |||||||||||||||| |||| ||||||| |  |||||||  | |||||||||| ||||||| ||||||||    
T  19583 atcaataaggttcgagctgtatcaactaaatgaagatgtttcctttcagcgacgccattttgttgtggtgtgtggggacaact 19501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 268
Target Start/End: Complemental strand, 36498751 - 36498660
Alignment:
Q  177 attgatcaataaggtacgagctgtatcaactagatgacgatgttttcgctcagcgatactattttgttgtcgtgtgtgtggacaactagact 268  Q
    |||||| ||||| || |||||||| ||||| | ||||||||||||||  ||||||| || |||||||||  ||||||| |||||||| ||||    
T  36498751 attgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtgtgtgaggacaactggact 36498660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University