View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_28 (Length: 449)
Name: NF18993_low_28
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 40206312 - 40206552
Alignment:
| Q |
18 |
atactgtcttacaaataacttttaaatagttacactttaatctaaattccatgtttgataagcaattttaggttcttcctagtaaatccaaacaaacata |
117 |
Q |
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| T |
40206312 |
atactgtcttacaaataacttttaaatagttacactttaatctaaattccatgtttgataagcaattttaggttcttcctagtaaatccaaacaaacata |
40206411 |
T |
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| Q |
118 |
caccaaaacttcacaaggccaagattcattaacacgggaagaagaatatgctttgtttccttgttgcccaagaatccacctgaattcccacgcgagatta |
217 |
Q |
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| T |
40206412 |
caccaaaacttcacaaggccaagattcattaacacgggaagaagaatatgctttgtttccttgttgcccaagaatccacctgaattcccacgcgagatta |
40206511 |
T |
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| Q |
218 |
aaccctgtgggagacactttccacaaattggtcttacaatt |
258 |
Q |
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| T |
40206512 |
aaccctgttggagacactttccacaaattggtcttacaatt |
40206552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 301 - 436
Target Start/End: Original strand, 40206595 - 40206730
Alignment:
| Q |
301 |
ctcttcattattgagtgatactaggagcgtggacttctcgtgatatggttgggacggtggacatatatcactatttttcttaagcaacatagcactatta |
400 |
Q |
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| T |
40206595 |
ctcttcattattgagtgatactaggagcgtggacttctcgtgatatggttgggacggtggacatatatcactatttttcttaagcaacatagcactatta |
40206694 |
T |
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| Q |
401 |
tattatcacattttttaatacaaaaatgattctatt |
436 |
Q |
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| T |
40206695 |
tattatcacattttttaatacaaaaatgattctatt |
40206730 |
T |
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