View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_3 (Length: 624)
Name: NF18993_low_3
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 17 - 618
Target Start/End: Complemental strand, 41921240 - 41920638
Alignment:
| Q |
17 |
aaatgtaggtaagtagaagtaccatataacatttactatttagaaatcattgaatgccagagtttttaaaagtggtttgcaactgccatccgagtcacga |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921240 |
aaatgtaggtaagtagaagtaccatataacatttactatttagaaatcattgaatgccagagtttttaaaagtggtttgcaactgccatccgagtcacga |
41921141 |
T |
|
| Q |
117 |
cataaaagtttctgcaacatctatgcgaccacaatttactattggtcgcatcagttgcttagattgcgatgctctaaatattaaagattgtgacacaatc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41921140 |
cataaaagtttctgcaacatctatgcgaccacaatttactattggtcgcatcagttgcttaaattgcgatgctctaaatattaaagattgtgacacaatc |
41921041 |
T |
|
| Q |
217 |
atgattaaaaaactagttgaatgctaccaaataactaagacaatagtactgatttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagt |
316 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921040 |
atgattaaaaaactagttgaatgctatcaaataactaagacaatagtactaatttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagt |
41920941 |
T |
|
| Q |
317 |
ccctgctttagccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctcta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920940 |
ccctgctttagccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctcta |
41920841 |
T |
|
| Q |
417 |
tgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctgacatgtagaaaacacaatcaagttaacaaagttttacttgcat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920840 |
tgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctgacatgtagaaaacacaatcaagttaacaaagttttacttgcat |
41920741 |
T |
|
| Q |
517 |
aacaagtttcttgtatttaaagggaaa-ttggcttatgtatttgtacagcatgttacacagtagtagttaaaaaaggtatacatttaaatacatattctt |
615 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
41920740 |
aacaagtttcttgtatttaaagggaaatttggcttatgtatttgtacagcatgttacacagtagtagttgaaaaaggtatacatttaaatacatattatt |
41920641 |
T |
|
| Q |
616 |
cga |
618 |
Q |
| |
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||| |
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| T |
41920640 |
cga |
41920638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 9e-50; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 269 - 473
Target Start/End: Original strand, 26829762 - 26829966
Alignment:
| Q |
269 |
tttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattca |
368 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||| |||||| ||||| | |||||| |||||| ||||||||||||||| |||||||||||||||||| |
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| T |
26829762 |
tttatacctgtctccaatcctaaatcgaagctttttgagtcctttaccactagctttacccttgaaagcatctccaagtttttcagtgacaatccattca |
26829861 |
T |
|
| Q |
369 |
ttcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtg |
468 |
Q |
| |
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||||||| ||||||||| ||||||||||||| |||||||||| || ||| ||||||||| |||||| |||| |||||||||||| |||||||||| || |
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| T |
26829862 |
ttcactctactagcctctagtagaccaataatcgttgcctttgttcgatgaagagacatggtattctcgaataaaatccaaaagacaagtaaatggaatg |
26829961 |
T |
|
| Q |
469 |
acctg |
473 |
Q |
| |
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||||| |
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|
| T |
26829962 |
acctg |
26829966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 328 - 474
Target Start/End: Original strand, 26782932 - 26783078
Alignment:
| Q |
328 |
ccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacat |
427 |
Q |
| |
|
|||| ||||||| ||||||||| || |||||||||||||||||||||| ||||| ||| |||| |||||||| ||||||||||||| || | |||||| |
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| T |
26782932 |
ccttaagagcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataattgttgcctttgctcgatttaaagacat |
26783031 |
T |
|
| Q |
428 |
gacattctcaaatagaatccaaaagacgagtaaatggagtgacctga |
474 |
Q |
| |
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| ||||||||| ||||||||||| || | |||||| | |||||||| |
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| T |
26783032 |
ggtattctcaaagagaatccaaaatacaactaaatgcaatgacctga |
26783078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 268 - 474
Target Start/End: Original strand, 26789245 - 26789451
Alignment:
| Q |
268 |
atttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattc |
367 |
Q |
| |
|
|||| ||||||||| |||| | |||||| |||| |||||| ||||| || ||||| |||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
26789245 |
atttttacctgtctacaattttaaatcgaagctttttgagttctttaccaccatctttacccttgagagcatctccaagtttttcagtgacaatccattc |
26789344 |
T |
|
| Q |
368 |
attcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagt |
467 |
Q |
| |
|
|||||||| ||||| ||| || |||||||||| ||||| |||| || ||| |||| ||| ||| ||||| |||| |||||||| | ||||| || | |
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|
| T |
26789345 |
attcactctactagtctctagcagaccaataattgttgcttttgttcgatgtagagctatggtattttcaaagagaacccaaaagataactaaatagaat |
26789444 |
T |
|
| Q |
468 |
gacctga |
474 |
Q |
| |
|
||||||| |
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|
| T |
26789445 |
gacctga |
26789451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 330 - 453
Target Start/End: Original strand, 26816137 - 26816260
Alignment:
| Q |
330 |
ttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatga |
429 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||| |||| || ||| |||| ||| |
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| T |
26816137 |
ttgagagcatctccaagtttttcagtgacaatccattcattcactctactagtctctagtagaccaataattgttgcttttgttcgatgtagagctatgg |
26816236 |
T |
|
| Q |
430 |
cattctcaaatagaatccaaaaga |
453 |
Q |
| |
|
||| ||||| |||| |||||||| |
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|
| T |
26816237 |
tattttcaaagagaacccaaaaga |
26816260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 328 - 374
Target Start/End: Complemental strand, 2301264 - 2301218
Alignment:
| Q |
328 |
ccttgagagcatctccaagtttctcagtgacaatccattcattcact |
374 |
Q |
| |
|
|||| ||||||| ||||||||| | |||||||||||||||||||||| |
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|
| T |
2301264 |
ccttaagagcatttccaagttttttagtgacaatccattcattcact |
2301218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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