View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_low_30 (Length: 438)
Name: NF18993_low_30
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 133 - 425
Target Start/End: Complemental strand, 18252159 - 18251867
Alignment:
| Q |
133 |
aatggaggcttagatggttacattgtctttttcacaacaaatactaaattaagacatgttattggaaaagtatctaaataaagattctactttgtatact |
232 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18252159 |
aatgaaggcttagatggttacattgtctttttcacaacaaatactaaattgagacatgttattggaaaagtatctaaataaagattctactttgtatgct |
18252060 |
T |
|
| Q |
233 |
atatagtttgtagctagtgtttaccctccccttctcactaggaaatgacaccggtgatttggagtttggtcggaaagcaaattcagtttctcttgaacaa |
332 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
18252059 |
atatagtttgtagctagtgtttaccctctccttctcactagaaaatgacaccggtgatttggagtttggtcagaaagcaaactcagtttctcttgaacaa |
18251960 |
T |
|
| Q |
333 |
tttctcctcgatgctcattaaccatttgtatctaattgcttggttattttatatatccatgtcttttctctaccactcttgttatttcttctc |
425 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18251959 |
tttctcctcgatacttattaaccacttgtatctaattgtttggttattttatatatccacgtcttttctctaccactcttgttatttcttctc |
18251867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 18256998 - 18257105
Alignment:
| Q |
17 |
aaatatatgtttttgatattccttttgaataatttgaattgatcattcaatagtcattgacaaatgcatgtaatgagtaatgatgatcgtggtcattcta |
116 |
Q |
| |
|
|||||||| ||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18256998 |
aaatatatatttttaatattctttctgaataatttgaattgatcattcaatagtcattgacaaatgcatgtaatgagtaatgatgatcgtggtcattcta |
18257097 |
T |
|
| Q |
117 |
acaaatgc |
124 |
Q |
| |
|
|||||||| |
|
|
| T |
18257098 |
acaaatgc |
18257105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 18252570 - 18252468
Alignment:
| Q |
17 |
aaatatatgtttttgatattccttttgaataatttgaattgatcattcaatagtcattgacaaatgcatgtaatgagtaatgatgatcgtggtcattcta |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18252570 |
aaatatatgttttttatattccttttgaataatttgaattgatcatt-----gtcattgacaaatgcatgtaatgagtaatgatgattgtggtcattcta |
18252476 |
T |
|
| Q |
117 |
acaaatgc |
124 |
Q |
| |
|
|||||||| |
|
|
| T |
18252475 |
acaaatgc |
18252468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 31221611 - 31221543
Alignment:
| Q |
142 |
ttagatggttacattgtctttttcacaac-aaatactaaattaagacatgttattggaaaagtatctaa |
209 |
Q |
| |
|
||||||||||| ||||||||||||| ||| |||||||| | | ||||||| |||||||||||||||||| |
|
|
| T |
31221611 |
ttagatggttagattgtctttttcagaacaaaatactagaatgagacatgctattggaaaagtatctaa |
31221543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 31246188 - 31246112
Alignment:
| Q |
142 |
ttagatggttacattgtctttttcacaacaaa-tactaaattaagacatgttattggaaaagtatctaaataaagat |
217 |
Q |
| |
|
|||| ||| ||||||||||||| | |||||| ||||||||| ||| |||||| || ||||| |||||||||||||| |
|
|
| T |
31246188 |
ttaggtggctacattgtcttttacgtaacaaaatactaaattgagatatgttactgcaaaagcatctaaataaagat |
31246112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University