View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_31 (Length: 438)

Name: NF18993_low_31
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_31
NF18993_low_31
[»] chr8 (11 HSPs)
chr8 (16-428)||(3159777-3160189)
chr8 (42-428)||(2889561-2889950)
chr8 (132-428)||(2875298-2875595)
chr8 (193-428)||(3145185-3145420)
chr8 (241-428)||(2796137-2796327)
chr8 (41-131)||(2874920-2875010)
chr8 (41-131)||(2797225-2797314)
chr8 (242-320)||(18393581-18393659)
chr8 (135-232)||(2796835-2796932)
chr8 (242-357)||(27401840-27401955)
chr8 (242-317)||(1226113-1226187)
[»] chr2 (6 HSPs)
chr2 (242-365)||(17651268-17651391)
chr2 (48-166)||(41849222-41849335)
chr2 (242-317)||(44649997-44650072)
chr2 (242-356)||(4748110-4748224)
chr2 (365-427)||(41848957-41849019)
chr2 (365-425)||(38783772-38783832)
[»] chr1 (6 HSPs)
chr1 (242-431)||(16426366-16426564)
chr1 (242-322)||(3387707-3387787)
chr1 (261-365)||(50127210-50127313)
chr1 (242-357)||(3954967-3955082)
chr1 (242-322)||(48632613-48632693)
chr1 (138-166)||(48632494-48632522)
[»] scaffold0012 (1 HSPs)
scaffold0012 (177-423)||(209133-209393)
[»] scaffold1723 (1 HSPs)
scaffold1723 (243-424)||(369-557)
[»] chr6 (3 HSPs)
chr6 (242-320)||(2602143-2602221)
chr6 (242-320)||(33234886-33234962)
chr6 (365-424)||(2602031-2602090)
[»] chr7 (9 HSPs)
chr7 (242-305)||(9729906-9729969)
chr7 (261-365)||(27993911-27994015)
chr7 (177-365)||(11820487-11820681)
chr7 (242-320)||(11809308-11809386)
chr7 (267-310)||(25445505-25445549)
chr7 (261-322)||(32716562-32716623)
chr7 (242-306)||(37338793-37338857)
chr7 (242-320)||(48598363-48598441)
chr7 (242-316)||(6439797-6439871)
[»] chr4 (2 HSPs)
chr4 (373-428)||(32593730-32593785)
chr4 (247-304)||(32593896-32593953)
[»] chr5 (1 HSPs)
chr5 (367-427)||(41815776-41815836)
[»] scaffold0325 (1 HSPs)
scaffold0325 (242-305)||(12947-13010)


Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Complemental strand, 3160189 - 3159777
Alignment:
Q  16 cacctccaggattacgcgtgtcgcagtgtccgacaagtgtactaaataaatgtttttcttctttattttgacactccttggacaggtgcccaacacctat 115  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  3160189 cacctctaggattacgcatgtcgcagtgtccgacaagtgtactaaataaatgtttttctcctttattttgacactccttggactggtgcccaacacctat 3160090  T
Q  116 ataaaacttatactccatgaggcatgtcagacaactcaaacaaatgtctgannnnnnnctatgcttacacacatagtatattcaagagttaaagacgtgc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  3160089 ataaaacttatactccatgaggcatgtcagacaactcaaacaaatgtctgatttttttctatgcttacacacatagtatattcaagagttaaagacgtgc 3159990  T
Q  216 ggaaaatcttgatcaacgaagggctataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttg 315  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3159989 ggaaaatgttgatcaacgaagggctataaagttgattacaacgtgtttaaatttttcgatattagatggataaataaaggccaaatactattgtaacttg 3159890  T
Q  316 ttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtg 415  Q
    |||||||||       ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3159889 ttatagacctttttttaatgaaataaattgctcaagttagatacatatttgattctcaatttagatctttcataaataaattagtatacaggtagcagtg 3159790  T
Q  416 tcggtgtcctatg 428  Q
    |||||||||||||    
T  3159789 tcggtgtcctatg 3159777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 42 - 428
Target Start/End: Original strand, 2889561 - 2889950
Alignment:
Q  42 tgtccgacaagtgtactaaataaatgtttttcttctttattttgacactccttggacaggtgcccaacacctatataaaacttatactccatgaggcatg 141  Q
    |||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  2889561 tgtcagacaagtgtactaaataaatatttttctcctttattttgacactccttggactggtacccaacacctctataaaacttatactccatgaggcatg 2889660  T
Q  142 tcagacaactcaaacaaatgtctgannnnnnn---ctatgcttacacacatagtatattcaagagttaaagacgtgcggaaaatcttgatcaacgaaggg 238  Q
    |||||||||||||||||||||||||          |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2889661 tcagacaactcaaacaaatgtctgattttttttttctatgcttccacacatagtatattcaagagttaaagacgtgcggaaaatgttgatcaacgaaggg 2889760  T
Q  239 ctataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaa 338  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       |||||||    
T  2889761 ctataaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatcttgttatagacctttttttaatgaaa 2889860  T
Q  339 taaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 428  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  2889861 taaattgctcaagtaagatacatacgtgattctcaatttagatctttcataaataaattagtatacaagtagcagtgtcggtgtcctatg 2889950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 132 - 428
Target Start/End: Original strand, 2875298 - 2875595
Alignment:
Q  132 atgaggcatgtcagacaactcaaacaaatgtctgannnnnnn-ctatgcttacacacatagtatattcaagagttaaagacgtgcggaaaatcttgatca 230  Q
    ||||||||||| |||||||||||||||||||||||        |||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||    
T  2875298 atgaggcatgttagacaactcaaacaaatgtctgattttttttctatgcttccacacatagtatattcaagagttgaagacgtgaggaaaatgttgatca 2875397  T
Q  231 acgaagggctataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnn 330  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||          
T  2875398 acgaagggctataaagttgattacaacgtgtttaaatttttcaatagtagatggataaataaaggccaaatactattgtatcttgttataaacctttttt 2875497  T
Q  331 naatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 428  Q
     |||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  2875498 taatgaactaaattgctcaagttagatacatatgtgattctcaattaagatctttcataaatagattagtatacaggtggcagtgtcggtgtcctatg 2875595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 193 - 428
Target Start/End: Complemental strand, 3145420 - 3145185
Alignment:
Q  193 atattcaagagttaaagacgtgcggaaaatcttgatcaacgaagggctataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataa 292  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  3145420 atattcaagagttaaagacgtgcggaaaatgttgatcaacgaagggctataaagttgaatacaacgtttttaaatttttcgatagtagatggataaataa 3145321  T
Q  293 aggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagat 392  Q
    |||||||||||||||||| |||||||||||||       ||||||||||||| ||||||| ||||||||  |||||||||||||||||||||||||| ||    
T  3145320 aggccaaatactattgtatcttgttatagacctttttttaatgaaataaattgctcaagtaagatacatgcgtgattctcaatttagatctttcataaat 3145221  T
Q  393 aaattagtatacaggtagcagtgtcggtgtcctatg 428  Q
    ||||||||||||| |||| |||||||||||||||||    
T  3145220 aaattagtatacaagtagtagtgtcggtgtcctatg 3145185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 241 - 428
Target Start/End: Complemental strand, 2796327 - 2796137
Alignment:
Q  241 ataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagacc---nnnnnnnaatgaa 337  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||    
T  2796327 ataaagttgattacaacgtatttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccttttttttttaatgaa 2796228  T
Q  338 ataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 428  Q
    ||||||| |||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||| | |||||||||| |||||||||||    
T  2796227 ataaattgctcaagttagatgcatatgtgattctcaattaagatctttcataaataaattagtatagaagtagcagtgtgggtgtcctatg 2796137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 2874920 - 2875010
Alignment:
Q  41 gtgtccgacaagtgtactaaataaatgtttttcttctttattttgacactccttggacaggtgcccaacacctatataaaacttatactcc 131  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  2874920 gtgtcagacaagtgtactaaataaatggttttcttctttattttgacactccttggactggtgtccaacacctatataaaacttatactcc 2875010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 2797314 - 2797225
Alignment:
Q  41 gtgtccgacaagtgtactaaataaatgtttttcttctttattttgacactccttggacaggtgcccaacacctatataaaacttatactcc 131  Q
    ||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||| |||||| |||||||||||||||    
T  2797314 gtgtcagacaagtgtactaaataaatggttttctcctttattttgacactccttggactggtgtccaaaacctat-taaaacttatactcc 2797225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 242 - 320
Target Start/End: Original strand, 18393581 - 18393659
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 320  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||    
T  18393581 taaagttgattacaacgtttttaaattttttgatagtagatggataaataaaggtcaaatactattttatcttgttata 18393659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 2796932 - 2796835
Alignment:
Q  135 aggcatgtcagacaactcaaacaaatgtctgannnnnnnctatgcttacacacatagtatattcaagagttaaagacgtgcggaaaatcttgatcaac 232  Q
    |||||||||||||||||||||||||||| |||       |||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  2796932 aggcatgtcagacaactcaaacaaatgtatgatttttttctatgcttccacacatagtatattcaagagttgaagacgtgaggaaaatgttgatcaac 2796835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 242 - 357
Target Start/End: Complemental strand, 27401955 - 27401840
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 341  Q
    |||||||||||||||||| |||   | |||| |||||||||||||||||||||||||||| |||||||| ||||||||| | |       ||||||||||    
T  27401955 taaagttgattacaacgtttttttttctttcaatagtagatggataaataaaggccaaattctattgtatcttgttatataactttttttaatgaaataa 27401856  T
Q  342 attactcaagttagat 357  Q
    ||| ||||||||||||    
T  27401855 attgctcaagttagat 27401840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 1226187 - 1226113
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgtt 317  Q
    |||||||||||||||| | ||||||||||| ||||||||||| ||||||||||  |||||||| | ||| ||||||    
T  1226187 taaagttgattacaacatttttaaattttt-gatagtagatgaataaataaagatcaaatactctggtatcttgtt 1226113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 242 - 365
Target Start/End: Complemental strand, 17651391 - 17651268
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 341  Q
    |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |       ||||||||||    
T  17651391 taaagttgattacaacgtatttaagtttttcaatagtagatggataaataaaggccaaatattattgtaacttgttatagaacttcttgtaatgaaataa 17651292  T
Q  342 attactcaagttagatacatatgt 365  Q
    ||| |||||||||||| |||||||    
T  17651291 attgctcaagttagatgcatatgt 17651268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 48 - 166
Target Start/End: Complemental strand, 41849335 - 41849222
Alignment:
Q  48 acaagtgtactaaataaatgtttttcttctttattttgacactccttggacaggtgcccaacacctatataaaacttatactccatgaggcatgtcagac 147  Q
    |||||||| |||||||| |  ||||||| ||||||| |||||||||||||| |||| || |||||||||||| ||||||     ||||||| |||| |||    
T  41849335 acaagtgtcctaaataagttattttcttttttatttcgacactccttggactggtgtccgacacctatataacacttat-----atgaggcgtgtcggac 41849241  T
Q  148 aactcaaacaaatgtctga 166  Q
    |||||||||||||||||||    
T  41849240 aactcaaacaaatgtctga 41849222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 44649997 - 44650072
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgtt 317  Q
    |||||||||||||||| | ||||| ||||| ||||||||||| ||||||||||| ||||| |||| ||| ||||||    
T  44649997 taaagttgattacaacatttttaacttttttgatagtagatgaataaataaaggtcaaattctatggtatcttgtt 44650072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 356
Target Start/End: Original strand, 4748110 - 4748224
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 341  Q
    |||||||||||||| | | ||||  || ||| |||| ||||| ||||||||||| |||||||||| |||||||||| |||| |       ||||||||||    
T  4748110 taaagttgattacagcatttttagtttgttcaatagaagatgaataaataaaggtcaaatactatcgtaacttgttttagaactttttccaatgaaataa 4748209  T
Q  342 attactcaagttaga 356  Q
    ||| |||||||||||    
T  4748210 attgctcaagttaga 4748224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 427
Target Start/End: Complemental strand, 41849019 - 41848957
Alignment:
Q  365 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctat 427  Q
    ||||||||||||||||| ||| ||| |||||||| |||| || |||| |||||||||||||||    
T  41849019 tgattctcaatttagatattttataaataaattaatatatagatagcggtgtcggtgtcctat 41848957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 425
Target Start/End: Original strand, 38783772 - 38783832
Alignment:
Q  365 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcct 425  Q
    |||||||||||| |||| ||| ||| |||||||| |||| || |||||| |||||||||||    
T  38783772 tgattctcaattcagatattttataaataaattaatatatagatagcagcgtcggtgtcct 38783832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 242 - 431
Target Start/End: Complemental strand, 16426564 - 16426366
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 341  Q
    ||||||||||||||  |  |||||||||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||| |       |||||| |||    
T  16426564 taaagttgattacagtgcatttaaatttttcaataatagatagataaataaaggccaaatactattgtaatttgttatagaacttgttttaatgaagtaa 16426465  T
Q  342 attactcaagttagatacatatg---------tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgctt 431  Q
    ||| |||||||||||| ||||||         ||||||| |||||| |||||| ||| |||||||| |||| ||||||| ||||| |||||||||||||    
T  16426464 attgctcaagttagatgcatatgtatgtattttgattcttaatttatatcttttataaataaattaatatataggtagcggtgtcagtgtcctatgctt 16426366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 3387787 - 3387707
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttataga 322  Q
    |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| || |||||||||||    
T  3387787 taaagttgattacaacgtttttaaatttttcgatggtagatgaataaataaaggtcaaatactattttatcttgttataga 3387707  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 365
Target Start/End: Original strand, 50127210 - 50127313
Alignment:
Q  261 tttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagataca 360  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |       |||||||||||||  ||||||||||| ||    
T  50127210 tttaaatttttcgatagtagatgaa-aaataaaggccaaatactattgtatcttgttatagaactttatttaatgaaataaattgttcaagttagatgca 50127308  T
Q  361 tatgt 365  Q
    |||||    
T  50127309 tatgt 50127313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 242 - 357
Target Start/End: Complemental strand, 3955082 - 3954967
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 341  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||||||||||| ||||||| || ||| ||| || |||| |       ||||||||||    
T  3955082 taaagttgattacaacgtttttagctttttcgatagtagatggataaataaaggtcaaatacgatcgtatcttattttagaactttttttaatgaaataa 3954983  T
Q  342 attactcaagttagat 357  Q
    ||| ||||||||||||    
T  3954982 attgctcaagttagat 3954967  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 48632613 - 48632693
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttataga 322  Q
    |||||||||||||||||| ||||  ||||| ||||||||| | ||||||||||| |||||||||| ||| |||||| ||||    
T  48632613 taaagttgattacaacgtttttagcttttttgatagtagaagaataaataaaggtcaaatactatggtatcttgttttaga 48632693  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 48632494 - 48632522
Alignment:
Q  138 catgtcagacaactcaaacaaatgtctga 166  Q
    |||||||||||||||||||||||||||||    
T  48632494 catgtcagacaactcaaacaaatgtctga 48632522  T

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Target: scaffold0012 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 177 - 423
Target Start/End: Complemental strand, 209393 - 209133
Alignment:
Q  177 tgcttacacacatagtatattcaagagttaaagacgtgcggaaaatcttgatcaacgaagggctat-------aaagttgattacaacgtgtttaaattt 269  Q
    ||||| ||||||| ||| ||||||||||||||||  || |  |||| ||||||||||| ||| |||       |||||| |||||||||| |||||||||    
T  209393 tgctttcacacatggtagattcaagagttaaagatttgtgagaaatgttgatcaacgaggggttatcgacattaaagtttattacaacgtttttaaattt 209294  T
Q  270 ttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatg----- 364  Q
    |||||| |||||||||||||||||||||||||| | |||||  |||||||||| |       ||||||||||||| ||  |||||||| ||||||         
T  209293 ttcgattgtagatggataaataaaggccaaatattgttgtattttgttatagaactttttttaatgaaataaattgct--agttagatgcatatgtatgt 209196  T
Q  365 ----tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtc 423  Q
        ||||||||||||||||| ||| ||| |||||||| |||| |  |||||||||| |||||    
T  209195 attttgattctcaatttagatattttataaataaattaatatataaatagcagtgtctgtgtc 209133  T

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Target: scaffold1723 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 424
Target Start/End: Original strand, 369 - 557
Alignment:
Q  243 aaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaa 342  Q
    |||||||||| |||||| ||| |||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||         ||||||||||     
T  369 aaagttgattccaacgtatttcaatttt-cgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaattttttttaatgaaataat 467  T
Q  343 ttactcaagttagatacata--------tgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcc 424  Q
    || |||||||||||| ||||        | ||||||| |||| |||||||| ||| |||||||| |||| || |||| ||||||||||||    
T  468 ttgctcaagttagatgcatattatgtattttgattcttaattaagatcttttataaataaattaatatatagatagcggtgtcggtgtcc 557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 2602221 - 2602143
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 320  Q
    ||||||||||||||||   ||||||||||||||||||| |||||||||||||||  ||||||||||||| |||||||||    
T  2602221 taaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggtaaatactattgtatcttgttata 2602143  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 320
Target Start/End: Original strand, 33234886 - 33234962
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 320  Q
    |||||||||||||||| | || ||||||| ||||||||||||||||||| |||| |||||||||||||| |||||||||    
T  33234886 taaagttgattacaacattttgaaatttt-cgatagtagatggataaat-aaggtcaaatactattgtatcttgttata 33234962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 424
Target Start/End: Complemental strand, 2602090 - 2602031
Alignment:
Q  365 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcc 424  Q
    ||||||| ||||||||||||| ||| |||||||| |||| ||||||  ||||||||||||    
T  2602090 tgattcttaatttagatcttttataaataaattaatatataggtagaggtgtcggtgtcc 2602031  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 305
Target Start/End: Original strand, 9729906 - 9729969
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatacta 305  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||||||    
T  9729906 taaagttgattacaacgcatttaaatttttcgatagtaggtggataaataaagtccaaatacta 9729969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 261 - 365
Target Start/End: Complemental strand, 27994015 - 27993911
Alignment:
Q  261 tttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagataca 360  Q
    ||||||||||||||| ||||||||||||||||||  ||| | |||||||| ||||||||||| |       ||||||||||||| ||||||||| || ||    
T  27994015 tttaaatttttcgatggtagatggataaataaagatcaattgctattgtatcttgttatagaactttatttaatgaaataaattgctcaagttaaatgca 27993916  T
Q  361 tatgt 365  Q
    |||||    
T  27993915 tatgt 27993911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 365
Target Start/End: Original strand, 11820487 - 11820681
Alignment:
Q  177 tgcttacacacatagtatattcaagagttaaagacgtgcggaaaatcttgatcaacgaagggcta-------taaagttgattacaacgtgtttaaattt 269  Q
    ||||| |||||| |||| |||||||||||||||| ||| |  |||| ||||||||||||||| ||       ||||| |||||||||| | |||||| ||    
T  11820487 tgcttccacacacagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaagggttatagacattaaagatgattacaacatttttaaaatt 11820586  T
Q  270 ttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagatacatatgt 365  Q
    ||  |||||||||  ||||||||||  ||||| ||||||||  |||| ||||| |       ||||||||||||| |||||||||||| |||||||    
T  11820587 tttaatagtagataaataaataaagctcaaatgctattgtatgttgtcatagaac-tttttgaatgaaataaattgctcaagttagatgcatatgt 11820681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 242 - 320
Target Start/End: Original strand, 11809308 - 11809386
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 320  Q
    |||| ||||||||||| | ||||||||||| ||  ||||||| |  ||||||||||||||||||||||| |||||||||    
T  11809308 taaatttgattacaacctttttaaattttttgacggtagatgaagtaataaaggccaaatactattgtatcttgttata 11809386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 310
Target Start/End: Complemental strand, 25445549 - 25445505
Alignment:
Q  267 tttttcgatagtagatggataaat-aaaggccaaatactattgta 310  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  25445549 tttttcgatagtagatggataaataaaaggccaaatactattgta 25445505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 32716562 - 32716623
Alignment:
Q  261 tttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttataga 322  Q
    ||||| |||||||||||| |||| ||||||||||  |||||||||||||| |||||| ||||    
T  32716562 tttaactttttcgatagtggatgaataaataaagatcaaatactattgtatcttgttttaga 32716623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 37338793 - 37338857
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactat 306  Q
    |||||||||| | ||| | ||||| ||||| ||||||||||| ||||||||||| ||||||||||    
T  37338793 taaagttgataataacatttttaacttttttgatagtagatgaataaataaaggtcaaatactat 37338857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 48598441 - 48598363
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatag-tagatggataaataaaggccaaatactattgtaacttgttata 320  Q
    |||||||| ||||||||| ||| ||||||| ||||  ||| |||||||||||||| |||||||||||||| | |||||||    
T  48598441 taaagttggttacaacgttttttaattttttgatatatag-tggataaataaaggtcaaatactattgtatcgtgttata 48598363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 6439871 - 6439797
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgt 316  Q
    |||||||||||||||| | ||||  |||||||||||||| || ||||||| | | |||||||||| ||| |||||    
T  6439871 taaagttgattacaacatttttatctttttcgatagtagttgaataaatagatgtcaaatactatcgtatcttgt 6439797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 428
Target Start/End: Complemental strand, 32593785 - 32593730
Alignment:
Q  373 aatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 428  Q
    |||||||||| || ||| ||||||||||||||||||||| ||||| ||||||||||    
T  32593785 aatttagatcatttataaataaattagtatacaggtagcggtgtcagtgtcctatg 32593730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 32593953 - 32593896
Alignment:
Q  247 ttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatact 304  Q
    |||||||||||   ||||||||||| || ||||||||||||||||||||| |||||||    
T  32593953 ttgattacaacacatttaaattttttgagagtagatggataaataaaggctaaatact 32593896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 427
Target Start/End: Original strand, 41815776 - 41815836
Alignment:
Q  367 attctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctat 427  Q
    ||||||||||| ||||||| ||| |||||||| |||| | ||||| |||||||||||||||    
T  41815776 attctcaatttggatcttttataaataaattaatatatatgtagcggtgtcggtgtcctat 41815836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 13010 - 12947
Alignment:
Q  242 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatacta 305  Q
    ||||||||||||||| || ||||  ||||| ||||||||||| ||||||||| | |||||||||    
T  13010 taaagttgattacaatgtttttagcttttttgatagtagatgaataaataaatgtcaaatacta 12947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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