View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_33 (Length: 432)
Name: NF18993_low_33
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 416
Target Start/End: Original strand, 52404802 - 52405205
Alignment:
| Q |
10 |
catcatcaatgatagcatgcatgagagtgcttttccctgataatagagattgcaaaattagcagagattaaaagagcatacaaatataacattactatag |
109 |
Q |
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| T |
52404802 |
catcatcaatgatagcatgcatgagagtgcttttccctgataatagagattgcaaagttagcagagattaaaggagcatacaaatataacattactatag |
52404901 |
T |
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| Q |
110 |
atgcatacaaatattaaaagaattcaattgattttttcaagtatacaaagaaaagtaaaactcacttcgacaatatatatttgaaccagacaagttgaca |
209 |
Q |
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| T |
52404902 |
atgcatacaaatattaaaagaattcaattgattttttcaagtatacaaagaaaagtaaaacccacttcgacaatat----ttgaaccagacaagttgaca |
52404997 |
T |
|
| Q |
210 |
ttcctccacaaccagagtacaaatctagcaactttagctctggttttttcttttcatcactagtatcagtgtttgcacttttagagtcatcctcagatct |
309 |
Q |
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| T |
52404998 |
ttcctccacagccagagtataaatctagcaactttagctctggttttttcttttcatcactagtatcagtgtttgcacttttagagtcaacctcagatct |
52405097 |
T |
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| Q |
310 |
tccattcacttcattttcagtagaaatttttgacaaaatttcactacgttttacgagt-nnnnnnntttactataatgagaagtttaaaattgaaaataa |
408 |
Q |
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| T |
52405098 |
tccattcacttcattttcagtagaaatttttgacaaaatttcactactttttacgagtagaacaaatttactataatgagaagtttaaaattgaaaataa |
52405197 |
T |
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| Q |
409 |
ataaataa |
416 |
Q |
| |
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|||||||| |
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| T |
52405198 |
ataaataa |
52405205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 253 - 356
Target Start/End: Original strand, 40716871 - 40716974
Alignment:
| Q |
253 |
ttttttcttttcatcactagtatcagtgtttgcacttttagagtcatcctcagatcttccattcacttcattttcagtagaaatttttgacaaaatttca |
352 |
Q |
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| T |
40716871 |
ttttttcttttcatcactagtataagtgtttgcacttttagagtcaacctcggatcttccattcacttcagtttcggtagaaattgttgacgaaatttca |
40716970 |
T |
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| Q |
353 |
ctac |
356 |
Q |
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|||| |
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| T |
40716971 |
ctac |
40716974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 52415586 - 52415661
Alignment:
| Q |
28 |
gcatgagagtgcttttccctgataatagagattgcaaaattagcagagattaaaagagcatacaaatataacatta |
103 |
Q |
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| T |
52415586 |
gcatgagggagcttttccctggtaatagagattgcaaagttagcagagattaaaagaacatataaaaataacatta |
52415661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 202 - 355
Target Start/End: Complemental strand, 28214799 - 28214646
Alignment:
| Q |
202 |
agttgacattcctccacaaccagagtacaaatctagcaactttagctctggttttttcttttcatcactagtatcagtgtttgcacttttagagtcatcc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| || |||||||| ||||||||||||||||| || |
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| T |
28214799 |
agttgacattcctccacaaccagagtacaaatctagcaacttcagctctggttttttcttatcatcattaatatcagtgattgcacttttagagtcaacc |
28214700 |
T |
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| Q |
302 |
tcagatcttccattcacttcattttcagtagaaatttttgacaaaatttcacta |
355 |
Q |
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| T |
28214699 |
tcagattttgcatttacttcagtttcattagaaattgttgaggaaatttcacta |
28214646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 31491268 - 31491212
Alignment:
| Q |
202 |
agttgacattcctccacaaccagagtacaaatctagcaactttagctctggtttttt |
258 |
Q |
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||||||||| || || |||||||| ||||| ||||||||||| |||||||||||||| |
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| T |
31491268 |
agttgacatcccaccgcaaccagaatacaagtctagcaacttcagctctggtttttt |
31491212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 206 - 356
Target Start/End: Original strand, 33853079 - 33853229
Alignment:
| Q |
206 |
gacattcctccacaaccagagtacaaatctagcaactttagctctggttttttcttttcatcactagtatcagtgtttgcacttttagagtcatcctcag |
305 |
Q |
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||||||||||| |||||||||||||||||||||||||| | || ||| |||||||||||| ||| | |||||||||||| || |||||| ||| |||||| |
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| T |
33853079 |
gacattcctccgcaaccagagtacaaatctagcaacttcatctgtggctttttcttttcaacacaaatatcagtgtttgaacatttagaatcaacctcag |
33853178 |
T |
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| Q |
306 |
atcttccattcacttcattttcagtagaaatttttgacaaaatttcactac |
356 |
Q |
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| T |
33853179 |
cttttccattcccttcagtttcatttgaaattgttgatgaaatttcactac |
33853229 |
T |
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