View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_38 (Length: 413)
Name: NF18993_low_38
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 104 - 404
Target Start/End: Original strand, 47495092 - 47495392
Alignment:
| Q |
104 |
attgactagtacgtacatttactagggagtcaatcaagaattaaaagaggaggtgggaaaggaaaatgaatatattttggtgggctatgatttcggcgaa |
203 |
Q |
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| T |
47495092 |
attgactagtacttacatttactagggagtcaatcaagaattaaaagaggaggtgggaaaggaaaatgaatatattttggtgggctatgatttcggcgaa |
47495191 |
T |
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| Q |
204 |
atgttaaagctatagtagctgtttcaaattgaaaattgaagacattgattattttgatgtatttgtggcgagattttggtcactagggtgatggattatg |
303 |
Q |
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| T |
47495192 |
attttaaagctatagtagctgtttcagattgaaaattgaagacattgattattttgatgtatttgtggcgagattttggtcactagggtgatggattatg |
47495291 |
T |
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| Q |
304 |
tgtatttgagacaatgcttttattttatgttttgaagattgttcaagggttggttggttggttggttatgtactcagtagtgagcattgagtgtgatgat |
403 |
Q |
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| T |
47495292 |
tgtatttgagacaatgcttttattttatgttttgaagattgttcaagggttggttggttggttggttatgtactcagtagtgagcattgagtgtgatgat |
47495391 |
T |
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| Q |
404 |
g |
404 |
Q |
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| T |
47495392 |
g |
47495392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 47495005 - 47495036
Alignment:
| Q |
17 |
agaaaaaacatcatgttgatttgattctacaa |
48 |
Q |
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| T |
47495005 |
agaaaaaacatcatgttgatttgattctacaa |
47495036 |
T |
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