View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_39 (Length: 408)
Name: NF18993_low_39
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 28887991 - 28888164
Alignment:
| Q |
12 |
atgaagagaggggcttggaagctgtagaaagactaaaaaatgagtttgatttctctgactttgtggtttttcatcagcttgatgttgatgaccctgctag |
111 |
Q |
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| T |
28887991 |
atgaagagaggggcttggaagcagtagaaagactaaaaaatgagtttgatttctctgactttgtggtttttcatcagcttgatgttgatgaccctgctag |
28888090 |
T |
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| Q |
112 |
tgttgcatctttagcttctttcattaaaaccatgtttgggaaacttgatatcttggtatgaatgatagttttga |
185 |
Q |
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| T |
28888091 |
tgttgcatctttagcttctttcattaaaaccatgtttgggaaacttgatatcttggtatgaatgatagttttga |
28888164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 229 - 392
Target Start/End: Original strand, 28888161 - 28888324
Alignment:
| Q |
229 |
ttgacacaagtggtagatgcttaggtctcataagcatttggtctagtattcgattattagtcgacgggtgtgnnnnnnntatattggaagatttcaaacc |
328 |
Q |
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| T |
28888161 |
ttgacacaagtggtagatgcttaggtctcataagcatttggtctagtattcgatcattagccaatgcgtgtgaaaaaaatatattgggagatttcaaacc |
28888260 |
T |
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| Q |
329 |
cttaaatgaatctaagttatctcgagagattagtctctgcagttgtatgcagggatacattggt |
392 |
Q |
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| T |
28888261 |
cttaaatgaatctcagttatctcgagagattactctccgcagttgtatgcagggatacattggt |
28888324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 211 - 392
Target Start/End: Original strand, 36015846 - 36016032
Alignment:
| Q |
211 |
tgcattttaccaacctcgttgacacaagtggtagatgcttaggtctcataagcatttggtctagtattcgattattag----tcgacgggtgtg-nnnnn |
305 |
Q |
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| T |
36015846 |
tgcattttaccaacctcgttgacacaagtggtagatgcttaggtctcataagcatttggtctagtattcgatcattagccaattaatgcgtgtgaaaaaa |
36015945 |
T |
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| Q |
306 |
nntatattggaagatttcaaacccttaaatgaatctaagttatctcgagagattagtctctgcagttgtatgcagggatacattggt |
392 |
Q |
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| T |
36015946 |
aatatattgggagatttcaaatccttaaatgaatctcagttatctcgagagattagtctccgcagttgtatgtagggatacattggt |
36016032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 11945689 - 11945586
Alignment:
| Q |
65 |
tctgactttgtggtttttcatcagcttgatgttgatgaccctgctagtgttgcatctttagcttctttcattaaaaccatgtttgggaaacttgatatct |
164 |
Q |
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| T |
11945689 |
tctgactttgtggtttttcatcaacttgatgtcactgaccctacaagtgtttcttctttagttgagttcatcaaaatccaatttgggaagcttgatatct |
11945590 |
T |
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| Q |
165 |
tggt |
168 |
Q |
| |
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|||| |
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| T |
11945589 |
tggt |
11945586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 4233074 - 4233136
Alignment:
| Q |
312 |
ttggaagatttcaaacccttaaatgaatctaagttatctcgagag-attagtctctgcagttg |
373 |
Q |
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|||| |||| |||| |||||||||| |||| ||||| |||||||| ||||||||||||||||| |
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| T |
4233074 |
ttgggagatgtcaaccccttaaatggatcttagttacctcgagaggattagtctctgcagttg |
4233136 |
T |
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