View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_4 (Length: 596)
Name: NF18993_low_4
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 88 - 579
Target Start/End: Original strand, 38532868 - 38533358
Alignment:
| Q |
88 |
aagcaaagtttatccccacatgtacataaatagattagaaacacaataaggagagtctaataaaagcttcttcacaaatgtgtaacacggtttcaaagca |
187 |
Q |
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| T |
38532868 |
aagcaaagtttatccccacatgtacataaatagattagaaacacaataaggagagtctaataaaagcttcttcacaaatgtgtaacacggtttcaaagca |
38532967 |
T |
|
| Q |
188 |
tnnnnnnntgatacctgacttcaacccttcatttgagagattcatttcattctcactcattttagatcatgatttttaaatactactagtatatatactt |
287 |
Q |
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| T |
38532968 |
taaaaaaatgatacctgacttcaacccttcatttgagagattcatttcattctcactcattttagatcatgatttttaaatactactagtatatatactt |
38533067 |
T |
|
| Q |
288 |
gtgattgaatatataatattatttacttcttagcctttaatttctcaccatcacttttatacctagctagactagatggaacattatgctattcgccttc |
387 |
Q |
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| T |
38533068 |
gtgattgaatatataatattatttacttcttagcctttaatttctcaccatcacttt-atacctagctagactagatggaacattatgctattcgccttc |
38533166 |
T |
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| Q |
388 |
gttgttcaccccttcctagtcctcccttgcatctttcctatggttccaaaagatatgaagatgcaagtgctaggggaagcaaatttcatctcaaatttaa |
487 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38533167 |
gttgttcaccccttcgtagtcctcccttgcatctttcctatggttccaaaagatatgaagatgcaagtgctaggggaagcaaatttcatctcaaatttaa |
38533266 |
T |
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| Q |
488 |
ccatgccactcttaatttccctcaattttccgcaagccaccaatttgcacgttcatttgggcatgcaaattgcatgattaacaacagcttct |
579 |
Q |
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| T |
38533267 |
ccatgccactcttaatttccctcaattttccgcaagccaccaatttgcacgttcatttgggcatgcaaattgcatgattaacaacagcttct |
38533358 |
T |
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