View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_low_40 (Length: 405)
Name: NF18993_low_40
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_40 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 794479 - 794109
Alignment:
| Q |
1 |
gtattaacaatacaatttaacgtaaaagattattttaactaatataatgtatgatcaaggattattttgaaattttttatgcattaaaaaactacgtgat |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
794479 |
gtattaacgatacaatttaacgtaaaagactattttaactaatataatgtatgatcaaggattattttaaaaaattttatgcattaaaaaactacgtgac |
794380 |
T |
|
| Q |
101 |
tattcgttacacattcggaaactaaaataattattactccattagtatcttaaccgagttaggttggcggtttcgacttagtttgtcaccccatgtgttg |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
794379 |
tattcgttacacattcgaaaactaaaataattattgctccattagtatctt--------------------ttcgacttagtttgtcaccccatgtgttg |
794300 |
T |
|
| Q |
201 |
ctaacggagtccatgcgttagctacctatggttgtatagttcgtggctagagtgtgattttcatcttgtagtctcaactttcaagaatgataatttggat |
300 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
794299 |
ctaacgaagtccatgcattagctacctatggttgtatagttcgtggctagagtgtgattttcatcttgtagtctcaactttcaagaatgataatttggat |
794200 |
T |
|
| Q |
301 |
tttcttttctttgctaattgataatatggttctttggagacttcacaattaatggataaattgtatgaatttaactagaatgatgtctttg |
391 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
794199 |
tttcttttctttgctaattgataatttggttctttggagacttcgcaattaatggataaattgtatgaatttaactagaatgatgtctttg |
794109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 29094027 - 29093967
Alignment:
| Q |
16 |
tttaacgtaaaagattattttaactaatataatgtatgatcaaggattattttgaaatttt |
76 |
Q |
| |
|
||||||| ||| |||||||||||||||||| ||||| |||| |||||||||| ||||||| |
|
|
| T |
29094027 |
tttaacgaaaataattattttaactaatatagtgtataatcatggattattttaaaatttt |
29093967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 14532405 - 14532465
Alignment:
| Q |
16 |
tttaacgtaaaagattattttaactaatataatgtatgatcaaggattattttgaaatttt |
76 |
Q |
| |
|
|||||||||||||| |||||| |||||||| |||| || |||||||||||| ||||||| |
|
|
| T |
14532405 |
tttaacgtaaaagactattttggttaatataacgtataattaaggattattttaaaatttt |
14532465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University