View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_41 (Length: 403)
Name: NF18993_low_41
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 51 - 386
Target Start/End: Complemental strand, 29603583 - 29603241
Alignment:
| Q |
51 |
aaattcacagaccaatcaattaacatggccgaatcatttctctttagtcttgctgaatcatttatcaccaaggttgcttctcttgctgttaaagaagctt |
150 |
Q |
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||||||| | |||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
29603583 |
aaattcaaaaaccaatcaatcaacatggcagaatcatttctctttagccttgctgaatcatttatcaccaaggttgcttctcgtgctgttgaagaagctt |
29603484 |
T |
|
| Q |
151 |
catcggcactcggcgtctatgatgatctacaagagattaaaaacactgtgtcactcatcaaagctgtgctgttggatgctgagctaaagcagaagcagaa |
250 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| |
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| T |
29603483 |
cattggcactcggcgtctatgatgatctacgagagattaaaaacactgtgtcactcatcaaagcagtgctcttggatgctgagttaaagcagaagcagaa |
29603384 |
T |
|
| Q |
251 |
tcacgagcttcgtgaatggctgcaacggatcaaacgtatct-------tgcagaagatgtaatcgatgattttcagtgtgaggcattgcggaagcacata |
343 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| |||||||| |||| ||||||||||| |||||| || |
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| T |
29603383 |
tcacgagcttcgtgaatggctgcaacagatcaaacgtgtcttctacgatgcagaagatgtaatcaatgattttgagtgcgaggcattgcgaaagcacgta |
29603284 |
T |
|
| Q |
344 |
gtcaacacttctggtagcatcggaaggaaggtacgacgatact |
386 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
29603283 |
gtcaacacttctggtagcatcagaaggaaggtacgacgttact |
29603241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 51 - 386
Target Start/End: Original strand, 29749711 - 29750053
Alignment:
| Q |
51 |
aaattcacagaccaatcaattaacatggccgaatcatttctctttagtcttgctgaatcatttatcaccaaggttgcttctcttgctgttaaagaagctt |
150 |
Q |
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| T |
29749711 |
aaattcaaaaaccaatcaatcaacatggcagaatcatttctctttagccttgctgaatcatttatcaccaaggttgcttctcgtgctgttgaagaagctt |
29749810 |
T |
|
| Q |
151 |
catcggcactcggcgtctatgatgatctacaagagattaaaaacactgtgtcactcatcaaagctgtgctgttggatgctgagctaaagcagaagcagaa |
250 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| |
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| T |
29749811 |
cattggcactcggcgtctatgatgatctacgagagattaaaaacactgtgtcactcatcaaagcagtgctcttggatgctgagttaaagcagaagcagaa |
29749910 |
T |
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| Q |
251 |
tcacgagcttcgtgaatggctgcaacggatcaaacgtatct-------tgcagaagatgtaatcgatgattttcagtgtgaggcattgcggaagcacata |
343 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| |||||||| |||| ||||||||||| |||||| || |
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| T |
29749911 |
tcacgagcttcgtgaatggctgcaacagatcaaacgtgtcttctacgatgcagaagatgtaatcaatgattttgagtgcgaggcattgcgaaagcacgta |
29750010 |
T |
|
| Q |
344 |
gtcaacacttctggtagcatcggaaggaaggtacgacgatact |
386 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
29750011 |
gtcaacacttctggtagcatcagaaggaaggtacgacgttact |
29750053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 182 - 386
Target Start/End: Original strand, 29742812 - 29743016
Alignment:
| Q |
182 |
agagattaaaaacactgtgtcactcatcaaagctgtgctgttggatgctgagctaaagcagaagcagaatcacgagcttcgtgaatggctgcaacggatc |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29742812 |
agagattaaaaacactgtgtcactcatcaaagctgtgctgttggatgctgagctaaagcagaagcagaatcacgagcttcgtgaatggctgcaacagatc |
29742911 |
T |
|
| Q |
282 |
aaacgtatcttgcagaagatgtaatcgatgattttcagtgtgaggcattgcggaagcacatagtcaacacttctggtagcatcggaaggaaggtacgacg |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29742912 |
aaacgtatcttgcagaagatgtaatcgatgattttcagtgtgaggcattgcggaagcacatagtcaacacttctggtagcatcggaaggaaggtacaacg |
29743011 |
T |
|
| Q |
382 |
atact |
386 |
Q |
| |
|
||||| |
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|
| T |
29743012 |
atact |
29743016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 29730135 - 29730086
Alignment:
| Q |
182 |
agagattaaaaacactgtgtcactcatcaaagctgtgctgttggatgctg |
231 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29730135 |
agagattaaaaacactgtgtcactcatcaaagctgtgctgttggatgctg |
29730086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 376
Target Start/End: Complemental strand, 32784841 - 32784633
Alignment:
| Q |
175 |
atctacaagagattaaaaacactgtgtcactcatcaaagctgtgctgttggatgctgagctaaagcagaagcagaatcacgagcttcgtgaatggctgca |
274 |
Q |
| |
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|||| ||||| || ||||||||||| |||||||||||||| ||| ||||||| ||||| | || ||| |||||| || ||||| ||||||||| || | |
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| T |
32784841 |
atcttcaagaaatcaaaaacactgtctcactcatcaaagccgtgttgttggacgctgaacaaacgcaatggcagaaccatgagctgcgtgaatggttgaa |
32784742 |
T |
|
| Q |
275 |
acggatcaaacgtatctt-------gcagaagatgtaatcgatgattttcagtgtgaggcattgcggaagcacatagtcaacacttctggtagcatcgga |
367 |
Q |
| |
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|| ||| || || |||| || ||||||||||||||||||||| |||| ||||| ||||| |||||||| |||||||||| ||||||||| || |
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| T |
32784741 |
acagattaagcgggtcttctatgatgccgaagatgtaatcgatgattttgagtgcgaggccttgcgaaagcacatcatcaacacttcaggtagcatcaga |
32784642 |
T |
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| Q |
368 |
aggaaggta |
376 |
Q |
| |
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||||||||| |
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| T |
32784641 |
aggaaggta |
32784633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 376
Target Start/End: Original strand, 49340198 - 49340278
Alignment:
| Q |
296 |
gaagatgtaatcgatgattttcagtgtgaggcattgcggaagcacatagtcaacacttctggtagcatcggaaggaaggta |
376 |
Q |
| |
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|||||||| || |||||||| | |||||||| ||||| |||||| | |||||||||||||||||||| ||||||||||| |
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| T |
49340198 |
gaagatgttatagatgatttcgaatgtgaggccttgcgaaagcacgtcatcaacacttctggtagcatcagaaggaaggta |
49340278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 376
Target Start/End: Original strand, 49351562 - 49351642
Alignment:
| Q |
296 |
gaagatgtaatcgatgattttcagtgtgaggcattgcggaagcacatagtcaacacttctggtagcatcggaaggaaggta |
376 |
Q |
| |
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|||||||| || |||||||| | |||||||| ||||| |||||| | |||||||||| ||||||||| ||||||||||| |
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| T |
49351562 |
gaagatgttatagatgatttcgaatgtgaggccttgcgaaagcacgtcatcaacacttcaggtagcatcagaaggaaggta |
49351642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 13441541 - 13441465
Alignment:
| Q |
296 |
gaagatgtaatcgatgattttcagtgtgaggcattgcggaagcacatagtcaacacttctggtagcatcggaaggaa |
372 |
Q |
| |
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||||||||||||||||||||| | ||||| || || | ||||| || |||||||||| ||||||||| ||||||| |
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| T |
13441541 |
gaagatgtaatcgatgattttgaatgtgaagccttacaaaagcaaatcatcaacacttcaggtagcatcagaaggaa |
13441465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 35157004 - 35157068
Alignment:
| Q |
205 |
tcatcaaagctgtgctgttggatgctgagctaaagcagaagcagaatcacgagcttcgtgaatgg |
269 |
Q |
| |
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|||||||||| |||||| ||||||||||| ||||||| | || || || ||||||||||||||| |
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| T |
35157004 |
tcatcaaagcagtgctgctggatgctgagaaaaagcagcatcaaaaccaggagcttcgtgaatgg |
35157068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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