View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_42 (Length: 397)
Name: NF18993_low_42
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 381
Target Start/End: Complemental strand, 18725652 - 18725282
Alignment:
| Q |
11 |
caaagggatagtaagaaaatacattatcatcttctgaacatgattcatcatctggttctacatgtgccaccagaggttagcttcctcttcatcttctttt |
110 |
Q |
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| T |
18725652 |
caaagggatagtaagaaaatacattatcatcttctgaacatgattcatcatctggttctacatctgccaccagaggttagcttcctcttcatcttctttt |
18725553 |
T |
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| Q |
111 |
tcagaagatgaaagatcaaggtcctcctattagagcagcaactagtaacagaagattacagaaaacgcaaatcgcaaacaatacgctagctcagctcgcc |
210 |
Q |
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| T |
18725552 |
tcagaagatgaaagatcaaggtcctcctattagagcagcaactagtaacagaagattacagaaaacacaaatcgcaaacaatacgctagctcagctcgcc |
18725453 |
T |
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| Q |
211 |
cgcccctcttatgtatttatacatgaaccatactaaacatctcccatgttgtcacgagacctttcttctttctctttgatggtacctatgtacctctcga |
310 |
Q |
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| T |
18725452 |
cacccctctaatgtgtttatacatgaaccatactaaacatctcccatgttgtcacgagacctttcttctttctctttgatggtacctatgtacctctcga |
18725353 |
T |
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| Q |
311 |
actaaaccaacttgtacaggccttaatcacattccttgctgatgttggggggatgactcattgatggttaa |
381 |
Q |
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| T |
18725352 |
actaaaccaacttgcacaagccttaatcacattccttgctgatgttggggggatgactcattgatggttaa |
18725282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 38970255 - 38970204
Alignment:
| Q |
140 |
ttagagcagcaactagtaacagaagattacagaaaacgcaaatcgcaaacaa |
191 |
Q |
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| T |
38970255 |
ttagaacatcaactagtaacagaagatcaaagaaaacgcaaatcgcaaacaa |
38970204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 32349565 - 32349617
Alignment:
| Q |
140 |
ttagagcagcaactagtaacagaagattacagaaaacgcaaatcgcaaacaat |
192 |
Q |
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||||| ||||||||||||||| ||||||| ||| ||| ||||||||||||||| |
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| T |
32349565 |
ttagaacagcaactagtaacaaaagattaaagataacacaaatcgcaaacaat |
32349617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 52579771 - 52579724
Alignment:
| Q |
140 |
ttagagcagcaactagtaacagaagattacagaaaacgcaaatcgcaa |
187 |
Q |
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| T |
52579771 |
ttagaacagcaactagtaacagaagattaaagaaaatgaaaatcgcaa |
52579724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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