View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_45 (Length: 392)
Name: NF18993_low_45
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 242 - 377
Target Start/End: Original strand, 4853801 - 4853936
Alignment:
| Q |
242 |
atataaagtagtttaaaggctagacttatacattataataatgaaagaagtaagaaattgaaatgtttacagcaaatataagtgtctcgttgatgaatta |
341 |
Q |
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| T |
4853801 |
atataaagtagtttaacggctagacttatacactataataatgcaagaagtaagaaattgaaatgtttacagcaaatataagtgtctcgttgatgaatta |
4853900 |
T |
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| Q |
342 |
tttgtaaggacatttttcttcactctatggtttgag |
377 |
Q |
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| T |
4853901 |
tttggaaggacatttttcttcactctatgttttgag |
4853936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 4853661 - 4853789
Alignment:
| Q |
59 |
tgatgtttttattgaaagtagtaatttctatttattataaaattatgtctttaatataaagtaaacaagttttaagataaactt--tacttttaatcttt |
156 |
Q |
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| T |
4853661 |
tgatgtttttattgaaagtagtaatttctatttattataaaattatgtttttaatataaagtaaacaagttctaagataaacttactacttttaatcttt |
4853760 |
T |
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| Q |
157 |
ataatgtatgtaagtttacacatgaaaaa |
185 |
Q |
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| T |
4853761 |
ataatgtatgcaagtttgcacatgaaaaa |
4853789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 4853561 - 4853615
Alignment:
| Q |
59 |
tgatgtttttattgaaagtagtaatttctatttattataaaattatgtctttaat |
113 |
Q |
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| T |
4853561 |
tgatgtttttattgaaagtagttatttctatttattataaaattatgtttttaat |
4853615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 18247807 - 18247755
Alignment:
| Q |
87 |
tatttattataaaattatgtctttaatataaagtaaacaagttttaagataaa |
139 |
Q |
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| T |
18247807 |
tatttattataaaattatgtatttaatataaaatgtataaattttaagataaa |
18247755 |
T |
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