View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_46 (Length: 392)
Name: NF18993_low_46
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 31664520 - 31664155
Alignment:
| Q |
18 |
cttctcagcctattgaagttggttgtgttggactagatgcagaaattgatcgtttaaggcaagagaaacacgagttgatgatggagcttgtgagtcttag |
117 |
Q |
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| T |
31664520 |
cttctcagcctattgaagttggttgtgttggactagatgcagaaattgatcgtttaaggcaagagaaacacatgttgatgacggagcttgtgagtcttag |
31664421 |
T |
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| Q |
118 |
aaagcagcaatataatactacactgtaccttctagagatggagcaaaggttagaagggataaaaatcaatcagaagaaaatgatgtctttcttagctaga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31664420 |
aaagcagcaatataatactacactgtaccttctagagatggagcataggttagaagggataaaaatcaatcagaagaaaatgatgtctttcttagctaga |
31664321 |
T |
|
| Q |
218 |
gctatgaaaaaccctgtcttcattcaccaactactccaacaaaaagagaagaaaaaggagcttgaagaagccgtgaccgtgacaaaaaagagaaggcttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31664320 |
gctatgaaaaaccctgtcttcattcaccaactactccaacaaaaagagaagaaaaaggagcttgaagaagccgtgaccgtgacaaaaaagagaaggcttg |
31664221 |
T |
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| Q |
318 |
ttgaacaaggaactagactaggtattggacaaccaagcagtgttaaagttgagccgttagaattat |
383 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31664220 |
ttgaacaaggaactagactaggtattggacaatcaagcagtgttaaagttgagccgttagaattat |
31664155 |
T |
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