View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_47 (Length: 390)
Name: NF18993_low_47
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 374
Target Start/End: Original strand, 47061317 - 47061677
Alignment:
| Q |
10 |
attattctaaagatggtggaagcatgtgatttaaaggtgaatatgaaaacacatggaaaaaagttattgagctgagttgagaataaacaaacagtgagtt |
109 |
Q |
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| T |
47061317 |
attattctaaagatggtggaagcatgtgatttaaaggtgaatatgaaaacacatggaaaaaagttattgagctgagttgagaataaacaaacagtgagtt |
47061416 |
T |
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| Q |
110 |
agagttggattggcagcctcacttgaagaagcatatgaagttaaaaattacggtcaaataaatgaatcgcataagttctaattccttgtctgccattgtg |
209 |
Q |
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| T |
47061417 |
agagttggattggcagcctcacttgaag---catatgaaggaaaaaattacggtcaaataaatgaatcgcataagttctaattccttgtctgccattgtg |
47061513 |
T |
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| Q |
210 |
cactaatccgatgcgaacatgttacacaaaattaaactggttttattggtttgtttgtaaaactaatttcaattgcatgcttaccaagtaatcaacctag |
309 |
Q |
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| T |
47061514 |
cactaatccgatgcgaacatgttacacaaa-ttaaactggttttattggtttgtttgtaaaactaatttcaattacatgcttaccaagtaatcaacctag |
47061612 |
T |
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| Q |
310 |
attgtggtataattaaataagaaaaatcctcacatcatatctgtgactatactatttgatgaaac |
374 |
Q |
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| T |
47061613 |
attgtggtataattaaataagaaaaatcctcacatcatatctgtgactatactatttgatgaaac |
47061677 |
T |
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