View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_48 (Length: 389)
Name: NF18993_low_48
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 138 - 375
Target Start/End: Original strand, 39839876 - 39840113
Alignment:
| Q |
138 |
aagattgaatttgagatctctcatatcatattaggcatagcaaccatgacagttgatatctccaaggtcttccaaaaactttgcaacaaaattgcaatct |
237 |
Q |
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| T |
39839876 |
aagattgaatttgagatctctcatatcatattaggcatagcaaccatgacagttgatatctccaacgtcttccaaaaactttgcaacaaaattgcaatct |
39839975 |
T |
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| Q |
238 |
tactaatattcgtgttagtagaacttatcatcttcatttggaaactaacatcagatacacaatcaatcacaactcgccaatacatcaaattcatcgaaga |
337 |
Q |
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| T |
39839976 |
tactaatattcgtgttagtagaacttatcatcttcatttggaaactaacatcagatacacaatcaatcacaactcgccaatacataaaattcatcgaaga |
39840075 |
T |
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| Q |
338 |
aaagaaccctactattcgttacaacaaaaagttgaatt |
375 |
Q |
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| T |
39840076 |
aaagaaccctactattcgttacaacaaaaagttgaatt |
39840113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 39839746 - 39839846
Alignment:
| Q |
6 |
agacaaaaacatcattttccttagttttccatccacttcactacnnnnnnnnnnnnngtacattattaggctgcacctacacacatgatctgttagatta |
105 |
Q |
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| T |
39839746 |
agacaaaaacatcattttccttagttttccatccacttcactac----atatatatagtacattattaggctgcacctacacacatgttctgttagatta |
39839841 |
T |
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| Q |
106 |
taatt |
110 |
Q |
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| T |
39839842 |
taatt |
39839846 |
T |
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