View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_low_5 (Length: 586)
Name: NF18993_low_5
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 170 - 575
Target Start/End: Original strand, 19412024 - 19412447
Alignment:
| Q |
170 |
agaaatcatttttcactttatgtaatgannnnnnnctttacaataatttattattgtatgattctgtcagttttctttaaatatcatttttatttgacaa |
269 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19412024 |
agaaatcatttttcactttatgtaatgatttttttctttacaat---ttattattgtatgattctgtcagttttctttaaatatcatttttatttgacaa |
19412120 |
T |
|
| Q |
270 |
cgaggaaagggtccaaatgttagacgatagtgaatactttaaatacttt------------aacccaattggttgaatata-----ctagggttgttggt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
19412121 |
cgaggaaagggtccaaatgttagacgatagtgaatactttaaatacttttcattctcctttaacccaattggttgaatataatagactagggttgttggt |
19412220 |
T |
|
| Q |
353 |
tgttacaa---cattttaaatactctaataatccaccacacatcctttgaaaacatcattaatcacataatcaaaagagaaaaagaaacttacgaacaat |
449 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19412221 |
tgttacaacaacattttaaatactctaataatccaccacacatcctttgaaaacatcattaatcacataatcaaaagagaaaaagaaacttacgaacaat |
19412320 |
T |
|
| Q |
450 |
ccttaaatagtgcatgcacctttcatgcaatcgttggactatacaatagggccgtgtgctataataaagggactttagctaaatttattactccctacgt |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19412321 |
ccttaaatagtgcatgcacctttcatgcaatcgttggactatacaatagggccgtgtgctacaataaagggactttagctaaatttattactccctacgt |
19412420 |
T |
|
| Q |
550 |
cccttttt-taagcatccattgatatt |
575 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
19412421 |
ccctttttataagcatccattgatatt |
19412447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 18161139 - 18161217
Alignment:
| Q |
119 |
caataattaacagttctacaatatgaatcatataactgttactgttgctgcagaaatcatttttcactttatgtaatga |
197 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18161139 |
caataattaacaattctataatatgaatcatataactgctactgttgctgcagaaatcatttttcacttggtgtaatga |
18161217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 357 - 458
Target Start/End: Original strand, 18161701 - 18161807
Alignment:
| Q |
357 |
acaacattttaaatactctaataatccaccacacatcctttga--------aaacatcattaatcacataatcaaaagagaaaaagaaacttacgaacaa |
448 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| | |
|
|
| T |
18161701 |
acaacattttaaatactctaat---ccgccacacatcctttgacaataattaaacatcattaatcacataatcaaaagagaaaaggaaatttacgaacta |
18161797 |
T |
|
| Q |
449 |
tccttaaata |
458 |
Q |
| |
|
|||||||||| |
|
|
| T |
18161798 |
tccttaaata |
18161807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University