View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_50 (Length: 379)
Name: NF18993_low_50
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 3215860 - 3215510
Alignment:
| Q |
17 |
atgtccatccagcagttttaagcacagggtaagtaatgctttaaagcatttctttaataatctttttcttagagcctaagattgtatatatttttgttga |
116 |
Q |
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| T |
3215860 |
atgtccatccagcagttttaagcacagggtaagtaatgctttaaagcatttctttaataatctttttcttagagcctaagattgtatatatttttgttga |
3215761 |
T |
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| Q |
117 |
atatgattcatattcactgataactgcgaagtcgctcgattgcgaaatgaagttagtggaatactttgtaactttaataagatttgtataattgaaaaac |
216 |
Q |
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| T |
3215760 |
atatgattcatattcactgataactgcgaagtcgctcgattgcgaaacgaagttagtggaatactttgtaactttaataagatttgtataattgaaaaat |
3215661 |
T |
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| Q |
217 |
tacataagtcactctattctcgtttcagagatgtagacataattgactgaatttcgtgatcagttgtttgtatttttgtgtgcgattatttatcttatct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||| |
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| T |
3215660 |
tacataagtcactctattctcgtttcagagatgtagacataattgactgaatttcgtgatcagttgtttatgtttctatgtgcgattatttatcttatct |
3215561 |
T |
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| Q |
317 |
ctttagaactggatttgtggttgtaacaattgttcttgttttggtcacagg |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215560 |
ctttagaactggatttgtggttgtaacaattgttcttgttttggtcacagg |
3215510 |
T |
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