View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_53 (Length: 367)

Name: NF18993_low_53
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_53
NF18993_low_53
[»] chr1 (28 HSPs)
chr1 (18-351)||(30745204-30745537)
chr1 (18-351)||(30766655-30766988)
chr1 (175-295)||(10907639-10907759)
chr1 (171-333)||(38859864-38860027)
chr1 (175-336)||(10155965-10156126)
chr1 (175-336)||(7742728-7742889)
chr1 (175-284)||(3346804-3346912)
chr1 (171-292)||(26835351-26835472)
chr1 (175-273)||(23908303-23908400)
chr1 (173-272)||(42456587-42456686)
chr1 (175-338)||(42517241-42517408)
chr1 (175-337)||(47022720-47022882)
chr1 (175-273)||(29149561-29149658)
chr1 (173-267)||(44107407-44107501)
chr1 (175-336)||(48392355-48392516)
chr1 (170-279)||(13131909-13132017)
chr1 (171-279)||(30252751-30252860)
chr1 (175-284)||(49902486-49902594)
chr1 (171-279)||(14796889-14796997)
chr1 (171-279)||(14805763-14805871)
chr1 (175-345)||(5975006-5975176)
chr1 (172-332)||(5558324-5558483)
chr1 (171-273)||(44462491-44462596)
chr1 (173-302)||(26511618-26511745)
chr1 (173-284)||(45968683-45968793)
chr1 (215-279)||(37189697-37189761)
chr1 (170-225)||(8430502-8430557)
chr1 (170-219)||(37189315-37189364)
[»] chr3 (34 HSPs)
chr3 (171-336)||(43347285-43347451)
chr3 (172-295)||(10839371-10839494)
chr3 (171-300)||(1781775-1781904)
chr3 (172-273)||(48206868-48206968)
chr3 (171-337)||(36539645-36539812)
chr3 (175-336)||(13856117-13856278)
chr3 (172-302)||(20382533-20382662)
chr3 (175-337)||(40845865-40846027)
chr3 (172-279)||(51336224-51336330)
chr3 (174-279)||(19649379-19649485)
chr3 (173-279)||(54546920-54547025)
chr3 (171-279)||(8926779-8926887)
chr3 (175-337)||(21853215-21853377)
chr3 (175-273)||(5391475-5391572)
chr3 (175-273)||(23467507-23467604)
chr3 (175-346)||(8950443-8950614)
chr3 (170-293)||(6280352-6280474)
chr3 (171-284)||(22845364-22845476)
chr3 (175-284)||(44994970-44995079)
chr3 (171-258)||(47889738-47889826)
chr3 (172-295)||(3178718-3178840)
chr3 (174-279)||(19644334-19644441)
chr3 (172-243)||(47315147-47315218)
chr3 (173-279)||(33103759-33103864)
chr3 (171-272)||(46685797-46685897)
chr3 (175-279)||(32352865-32352968)
chr3 (201-279)||(50663177-50663255)
chr3 (208-279)||(39352244-39352314)
chr3 (172-250)||(791831-791906)
chr3 (171-219)||(36826021-36826069)
chr3 (222-335)||(27642724-27642838)
chr3 (171-231)||(39299837-39299900)
chr3 (173-225)||(40500266-40500319)
chr3 (194-231)||(54378619-54378656)
[»] chr8 (19 HSPs)
chr8 (171-336)||(10112060-10112226)
chr8 (175-336)||(22324614-22324775)
chr8 (172-342)||(42072443-42072613)
chr8 (175-284)||(21525376-21525484)
chr8 (175-337)||(35806812-35806974)
chr8 (174-284)||(19334799-19334909)
chr8 (175-336)||(33934318-33934479)
chr8 (175-284)||(26021413-26021522)
chr8 (173-279)||(21488082-21488187)
chr8 (175-336)||(42013890-42014051)
chr8 (172-300)||(2824168-2824295)
chr8 (172-252)||(24065288-24065367)
chr8 (212-338)||(16591323-16591449)
chr8 (173-279)||(34697392-34697502)
chr8 (173-273)||(43282864-43282964)
chr8 (210-295)||(16523158-16523243)
chr8 (171-220)||(23756549-23756600)
chr8 (202-289)||(2271239-2271326)
chr8 (171-284)||(16818975-16819090)
[»] chr6 (17 HSPs)
chr6 (172-284)||(13103120-13103232)
chr6 (172-333)||(28750602-28750764)
chr6 (175-336)||(24694600-24694761)
chr6 (170-279)||(34103698-34103806)
chr6 (214-332)||(24497527-24497646)
chr6 (172-294)||(27863714-27863836)
chr6 (175-340)||(9231799-9231964)
chr6 (175-284)||(14309800-14309908)
chr6 (183-300)||(1727919-1728035)
chr6 (175-284)||(13627558-13627666)
chr6 (234-342)||(11084666-11084774)
chr6 (173-252)||(11212687-11212765)
chr6 (171-219)||(24500767-24500815)
chr6 (173-252)||(11279556-11279634)
chr6 (69-119)||(8676735-8676785)
chr6 (173-225)||(7517031-7517083)
chr6 (210-250)||(8412717-8412757)
[»] chr5 (27 HSPs)
chr5 (171-279)||(42119635-42119743)
chr5 (175-336)||(37168982-37169143)
chr5 (172-276)||(11856309-11856413)
chr5 (171-293)||(36769067-36769188)
chr5 (171-300)||(8456949-8457078)
chr5 (175-338)||(38397616-38397779)
chr5 (172-279)||(614399-614506)
chr5 (170-335)||(27916152-27916318)
chr5 (172-273)||(10081159-10081260)
chr5 (171-284)||(6174758-6174872)
chr5 (178-337)||(6257358-6257517)
chr5 (183-279)||(10115185-10115281)
chr5 (172-284)||(29491416-29491526)
chr5 (178-337)||(39862435-39862594)
chr5 (175-337)||(23218503-23218665)
chr5 (171-261)||(9738008-9738098)
chr5 (171-273)||(25560340-25560442)
chr5 (171-273)||(33271283-33271384)
chr5 (175-336)||(16618519-16618680)
chr5 (175-335)||(15631631-15631792)
chr5 (174-273)||(29790232-29790329)
chr5 (180-273)||(10052513-10052606)
chr5 (173-272)||(15475408-15475507)
chr5 (170-298)||(3341108-3341235)
chr5 (226-279)||(33188330-33188383)
chr5 (198-250)||(19322058-19322110)
chr5 (173-220)||(10052598-10052645)
[»] chr4 (28 HSPs)
chr4 (171-298)||(35322692-35322819)
chr4 (173-332)||(19124691-19124851)
chr4 (171-279)||(50328809-50328917)
chr4 (172-289)||(322541-322663)
chr4 (172-273)||(9742546-9742647)
chr4 (171-300)||(17888536-17888665)
chr4 (175-337)||(1535789-1535951)
chr4 (172-279)||(12792238-12792345)
chr4 (171-333)||(31377403-31377565)
chr4 (170-300)||(20818579-20818709)
chr4 (175-336)||(36012135-36012295)
chr4 (184-284)||(10094395-10094495)
chr4 (175-336)||(49284375-49284536)
chr4 (180-336)||(16338162-16338318)
chr4 (175-284)||(25954768-25954876)
chr4 (173-294)||(46474009-46474130)
chr4 (175-273)||(46583554-46583651)
chr4 (170-279)||(11054465-11054577)
chr4 (175-284)||(34241011-34241119)
chr4 (202-295)||(47084056-47084149)
chr4 (175-339)||(37801210-37801374)
chr4 (170-336)||(35018949-35019114)
chr4 (175-273)||(52632536-52632633)
chr4 (171-264)||(54090193-54090286)
chr4 (194-250)||(5780790-5780846)
chr4 (171-219)||(24991966-24992014)
chr4 (171-287)||(33982015-33982133)
chr4 (175-220)||(16338310-16338354)
[»] chr2 (21 HSPs)
chr2 (171-279)||(40780068-40780177)
chr2 (175-336)||(29846460-29846621)
chr2 (175-336)||(40277237-40277398)
chr2 (175-336)||(42769707-42769868)
chr2 (172-297)||(14539693-14539818)
chr2 (175-284)||(19181566-19181674)
chr2 (175-338)||(14186385-14186548)
chr2 (170-273)||(3956584-3956687)
chr2 (175-336)||(14941993-14942154)
chr2 (173-337)||(41674655-41674820)
chr2 (171-279)||(28321710-28321818)
chr2 (172-279)||(43139760-43139868)
chr2 (171-262)||(1387312-1387402)
chr2 (182-273)||(6318471-6318563)
chr2 (171-250)||(23685406-23685485)
chr2 (171-273)||(33009685-33009788)
chr2 (171-279)||(2888054-2888162)
chr2 (178-250)||(25665244-25665316)
chr2 (179-250)||(3597903-3597973)
chr2 (32-104)||(30477634-30477705)
chr2 (172-237)||(32486258-32486323)
[»] chr7 (21 HSPs)
chr7 (175-336)||(44164692-44164853)
chr7 (175-337)||(29555887-29556049)
chr7 (175-336)||(34707134-34707295)
chr7 (171-295)||(17303105-17303230)
chr7 (171-279)||(19334567-19334676)
chr7 (171-279)||(10334191-10334299)
chr7 (175-346)||(29238082-29238253)
chr7 (175-279)||(29981120-29981223)
chr7 (173-273)||(33057670-33057770)
chr7 (175-337)||(10576691-10576853)
chr7 (175-337)||(34259536-34259698)
chr7 (175-284)||(24320441-24320549)
chr7 (175-284)||(32876532-32876640)
chr7 (202-279)||(15017817-15017894)
chr7 (171-279)||(26284385-26284492)
chr7 (180-279)||(9770682-9770780)
chr7 (234-295)||(43342486-43342548)
chr7 (226-273)||(23032117-23032164)
chr7 (171-223)||(2702283-2702335)
chr7 (173-225)||(23032186-23032238)
chr7 (170-250)||(41853145-41853226)
[»] scaffold0045 (1 HSPs)
scaffold0045 (172-279)||(34459-34566)
[»] scaffold0079 (2 HSPs)
scaffold0079 (180-336)||(54542-54698)
scaffold0079 (175-220)||(54506-54550)
[»] scaffold0086 (1 HSPs)
scaffold0086 (201-279)||(20838-20916)
[»] scaffold0620 (1 HSPs)
scaffold0620 (246-336)||(2229-2322)
[»] scaffold0016 (1 HSPs)
scaffold0016 (205-270)||(85547-85612)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 30745204 - 30745537
Alignment:
Q  18 gtctagacgatcaaagaggtgcagaggatcaacaccacaattgttcactagagaggatgtgatgcttaactggtatagtgtatagttgttatgatgtata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30745204 gtctagacgatcaaagaggtgcagaggatcaacaccacaattgttcactagagaggatgtgatgcttaactggtatagtgtatagttgttatgatgtata 30745303  T
Q  118 tagtggcggagtcaggatcattataaaatctgggcnnnnnnnntttcaacacaggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaa 217  Q
     |||||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30745304 aagtggcggagtcaggatcattacaaaatctgggcaaaaaatatttcaacacaggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaa 30745403  T
Q  218 ttgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaatatttaggtcggagcctgggcaatgcccaggcttgctg 317  Q
    ||||||||||||||| | |||||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||| |||||||||| | |    
T  30745404 ttgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattgcaaaatatttgggtcggagcctgagcaacgcccaggctttccg 30745503  T
Q  318 ggccttagaaccgcccctggatatatatactata 351  Q
    |||||||||||||||||||||| |||||||||||    
T  30745504 ggccttagaaccgcccctggatgtatatactata 30745537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 30766655 - 30766988
Alignment:
Q  18 gtctagacgatcaaagaggtgcagaggatcaacaccacaattgttcactagagaggatgtgatgcttaactggtatagtgtatagttgttatgatgtata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30766655 gtctagacgatcaaagaggtgcagaggatcaacaccacaattgttcactagagaggatgtgatgcttaactggtatagtgtatagttgttatgatgtata 30766754  T
Q  118 tagtggcggagtcaggatcattataaaatctgggcnnnnnnnntttcaacacaggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaa 217  Q
     |||||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30766755 aagtggcggagtcaggatcattacaaaatctgggcaaaaaatatttcaacacaggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaa 30766854  T
Q  218 ttgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaatatttaggtcggagcctgggcaatgcccaggcttgctg 317  Q
    ||||||||||||||| | |||||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||| |||||||||| | |    
T  30766855 ttgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattgcaaaatatttgggtcggagcctgagcaacgcccaggctttccg 30766954  T
Q  318 ggccttagaaccgcccctggatatatatactata 351  Q
    |||||||||||||||||||||| |||||||||||    
T  30766955 ggccttagaaccgcccctggatgtatatactata 30766988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 175 - 295
Target Start/End: Complemental strand, 10907759 - 10907639
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| |||||     
T  10907759 tacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgtctgatttataggggtttatataagaaattcagaggaatttacataagaaattg 10907660  T
Q  275 caaaatatttaggtcggagcc 295  Q
    ||||| |||| || |||||||    
T  10907659 caaaaaatttgggccggagcc 10907639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 171 - 333
Target Start/End: Original strand, 38859864 - 38860027
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||||||||||||||||||| ||||||| ||||||| |||| |||||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||    
T  38859864 ggtttacataagaaattgcaagcaaataataaaaaaatctaaaaaaattgcccaatttataggggtttatataagaaattcataggaatttacataagaa 38859963  T
Q  271 attacaaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgccc 333  Q
    |||  |||| |||| || ||||||| |||| | ||||| || | || ||||| |||||||||||    
T  38859964 attgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgccgggccatagaaccgccc 38860027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 10156126 - 10155965
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||| || |||||     
T  10156126 tacataagaaattgcaagcaaataat-aaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcataggaatttacacaagaaattg 10156028  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| | || |  ||||||| |||| | ||||| || | || ||||||||||||||||||||    
T  10156027 caaaaaaattggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccctg 10155965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 7742889 - 7742728
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| | | ||||||| || |||||     
T  7742889 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcataaggatttacacaagaaattg 7742791  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| | || | |||||||| |||| | ||||| || | || ||||||||||||||||||||    
T  7742790 caaaaaaatttgctcggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccctg 7742728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 3346804 - 3346912
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| || |||||     
T  3346804 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaacaaattg 3346902  T
Q  275 caaaatattt 284  Q
    ||||| ||||    
T  3346903 caaaaaattt 3346912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 26835351 - 26835472
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    ||||||||| |||||||||||| ||||||||||||||| |||| ||||||| ||||||||||  |||||||||||||||||| | |||||||||||| ||    
T  26835351 ggtttacatgagaaattgcaagcaaataatcaaaaaatctaaaaaaattgttcaatttataggagtttatataagaaattcatatgaatttacataataa 26835450  T
Q  271 attacaaaatatttaggtcgga 292  Q
    ||| ||||| | ||||| ||||    
T  26835451 attgcaaaaaaattaggccgga 26835472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 273
Target Start/End: Original strand, 23908303 - 23908400
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatt 273  Q
    |||||||||||||||||| ||||||| ||||||  ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||    
T  23908303 tacataagaaattgcaagcaaataat-aaaaaacataaagaaattgtccaatttatagggatttatataagaaattcataggaatttacacaaaaaatt 23908400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 173 - 272
Target Start/End: Original strand, 42456587 - 42456686
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaat 272  Q
    |||||||||||||||||||||| ||||| ||    ||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||||    
T  42456587 tttacataagaaattgcaagtagataataaatttttttaaagaaattgcccaatttataggggtttatataagaaattcataggaatttacataagaaat 42456686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 338
Target Start/End: Complemental strand, 42517408 - 42517241
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggttt----atataagaaattcagaggaatttacataaaaa 270  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| |||||    |||||||||||||| ||| ||||||| || ||    
T  42517408 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttgtttatataagaaattcatagggatttacacaagaa 42517310  T
Q  271 attacaaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctgga 338  Q
    ||| ||||| |||| |  ||||||| |||| | ||||| || | || ||||||||||||||||||||||    
T  42517309 attgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccctgga 42517241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 337
Target Start/End: Original strand, 47022720 - 47022882
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||| | |||||||||  |||||||||||||||||| ||  ||||||| || |||||     
T  47022720 tacataagaaattacaagtaaataat-aaaaaatataaagaaattgcctaatttataggagtttatataagaaattcatagagatttacacaagaaattg 47022818  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctgg 337  Q
    ||||| |||| |  ||||||| |||| | ||||| || | || |||||||||||||||||||||    
T  47022819 caaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccctgg 47022882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 29149658 - 29149561
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatt 273  Q
    |||||||||||||||||| ||||||| ||||||  ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||    
T  29149658 tacataagaaattgcaagcaaataat-aaaaaacgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaatt 29149561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 173 - 267
Target Start/End: Complemental strand, 44107501 - 44107407
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataa 267  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||    ||||||||| ||||||||||| ||| ||||||||||||||||||    
T  44107501 tttacataagaaattgcaagtaaataatcaaaaaatctgaagaaattaattaatttataggggtttatataaaaaaatcagaggaatttacataa 44107407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 48392516 - 48392355
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||| ||||||| ||||||||||| | ||||||||||||||||| ||| ||||||| || |||||     
T  48392516 tacataagaaattgcaagcaaataat-aaaaaatgtaatgaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaattg 48392418  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| | || | |||||||| |||| | |||||  | | || ||||||||||||||||||||    
T  48392417 caaaaaaattggctcggagcccgggcgagtgcccgaggtcgccgggccttagaaccgcccctg 48392355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 13131909 - 13132017
Alignment:
Q  170 aggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaa 269  Q
    ||||||||||||||||||||||| | ||||  |||||  | |||||||||||||||||||||| | ||||||||| ||||| |||||||||||||||| |    
T  13131909 aggtttacataagaaattgcaaggagataagtaaaaagct-aaagaaattgtccaatttatagtgatttatataaaaaatttagaggaatttacataaga 13132007  T
Q  270 aattacaaaa 279  Q
    ||||||||||    
T  13132008 aattacaaaa 13132017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 30252860 - 30252751
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatat-aagaaattcagaggaatttacataaaa 269  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||| | ||||||| || |||||||||  |||||| ||||||    
T  30252860 ggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaagttgtctaatttatagggatttatataaaaaaattcagaaaaatttatataaaa 30252761  T
Q  270 aattacaaaa 279  Q
    |||| |||||    
T  30252760 aattgcaaaa 30252751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 49902486 - 49902594
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| || |||||||| ||||||||||||||||||| ||| ||||||| || |||||     
T  49902486 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgccctatttataggggtttatataagaaattcatagggatttacacaagaaattg 49902584  T
Q  275 caaaatattt 284  Q
    ||||| ||||    
T  49902585 caaaaaattt 49902594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 279
Target Start/End: Original strand, 14796889 - 14796997
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||||||||||||||||||| ||||| || |||||| ||||| ||| | | ||||||||   || |||||||||||||||||||||||||||||||||    
T  14796889 ggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattcagaggaatttacataaaaa 14796988  T
Q  271 attacaaaa 279  Q
    ||| |||||    
T  14796989 attgcaaaa 14796997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 279
Target Start/End: Original strand, 14805763 - 14805871
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||||||||||||||||||| ||||| || |||||| ||||| ||| | | ||||||||   || |||||||||||||||||||||||||||||||||    
T  14805763 ggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattcagaggaatttacataaaaa 14805862  T
Q  271 attacaaaa 279  Q
    ||| |||||    
T  14805863 attgcaaaa 14805871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 345
Target Start/End: Original strand, 5975006 - 5975176
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| | ||||||||| ||||||||||||||||||  ||| ||||||| || |||||     
T  5975006 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcttagggatttacacaagaaattg 5975104  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctggatatatat 345  Q
     |||| |||| |  ||||||| |||| | ||||| || | || |||||||||||||| |||||  |||||||    
T  5975105 aaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgtccctgtgtatatat 5975176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 172 - 332
Target Start/End: Original strand, 5558324 - 5558483
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    ||||| ||| ||||||||||| ||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| || |  ||||||||| |||    
T  5558324 gtttatatatgaaattgcaagcaaataatcaaaaa-tctaaagaaattgtccaatttataggggtttatataagaaattcggaag-gtttacataagaaa 5558421  T
Q  272 ttacaaaatatttaggtcggagcctgggcaa-tgcccaggcttgctgggccttagaaccgcc 332  Q
    || ||||| | ||||| || || | |||||| ||||| | |||   ||||||||||||||||    
T  5558422 ttgcaaaaaaattaggccgaagaccgggcaagtgcccggacttatcgggccttagaaccgcc 5558483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 171 - 273
Target Start/End: Complemental strand, 44462596 - 44462491
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaa---tttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataa 267  Q
    |||||| |||||||| |||||||||||||||||||||   |   ||||||||||| ||||||||||||||| |||||||||||||||   ||||||||||    
T  44462596 ggtttatataagaaactgcaagtaaataatcaaaaaaaaatcagaagaaattgtctaatttatagaggtttgtataagaaattcagatagatttacataa 44462497  T
Q  268 aaaatt 273  Q
    ||||||    
T  44462496 aaaatt 44462491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 302
Target Start/End: Complemental strand, 26511745 - 26511618
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaat 272  Q
    ||||| |||||||||| ||||||||||||||||| |||||||||||| | ||||||| ||   |||||||||||||||||| ||  ||||||||| ||||    
T  26511745 tttacgtaagaaattgtaagtaaataatcaaaaa-tttaaagaaattattcaatttacaggaatttatataagaaattcag-ggggtttacataagaaat 26511648  T
Q  273 tacaaaatatttaggtcggagcctgggcaa 302  Q
    | ||||| | ||||| ||||||| ||||||    
T  26511647 tgcaaaaaaattaggccggagcccgggcaa 26511618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 45968683 - 45968793
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaat 272  Q
    ||||||||||||||||||||||||||||| |||||| || | |||||||||||||||||   | |||||||| ||||||||  ||| |||||||||| ||    
T  45968683 tttacataagaaattgcaagtaaataatc-aaaaatctataaaaattgtccaatttataagagattatataaaaaattcaggagaacttacataaaatat 45968781  T
Q  273 tacaaaatattt 284  Q
    | ||||| ||||    
T  45968782 tgcaaaaaattt 45968793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 37189697 - 37189761
Alignment:
Q  215 aaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaa 279  Q
    |||||||||||||||||||| ||||||||||||||||| ||  |||||||||| ||||| |||||    
T  37189697 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgcaaaa 37189761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 8430557 - 8430502
Alignment:
Q  170 aggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaa 225  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||    
T  8430557 aggttaacataagaaattgcaagcaaataataaaaaaatttaaagaaattatccaa 8430502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 37189315 - 37189364
Alignment:
Q  170 aggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaatt 219  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  37189315 aggtttacataagaaattgcaaacaaataatcaaaaaatttaaataaatt 37189364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 171 - 336
Target Start/End: Complemental strand, 43347451 - 43347285
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||    
T  43347451 ggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttgtaggggtttatataagaaattcagaggaatttacataagaa 43347352  T
Q  271 attacaaaatatttaggtcggagcctgggcaa-tgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||| ||||| |||| |||||||||| || ||| |||||| ||| || ||| ||||||||||||||||    
T  43347351 attgcaaaaaatttgggtcggagcccggacaactgcccaagctcgccgggtcttagaaccgcccctg 43347285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 172 - 295
Target Start/End: Complemental strand, 10839494 - 10839371
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  10839494 gtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttatagaggtttatataagaaattcagagaaatttacataagaaa 10839395  T
Q  272 ttacaaaatatttaggtcggagcc 295  Q
    || ||||| |||| ||||||||||    
T  10839394 ttgcaaaaaatttgggtcggagcc 10839371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 171 - 300
Target Start/End: Original strand, 1781775 - 1781904
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||| ||    
T  1781775 ggtttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttattggggtttatataagaaattcagagggatttacataagaa 1781874  T
Q  271 attacaaaatatttaggtcggagcctgggc 300  Q
    ||| ||||| |||| || | ||||||||||    
T  1781875 attgcaaaaaatttgggccagagcctgggc 1781904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 48206868 - 48206968
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||    
T  48206868 gtttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggggtttatataag-aattcagaggaatttacataaaaaa 48206966  T
Q  272 tt 273  Q
    ||    
T  48206967 tt 48206968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 171 - 337
Target Start/End: Original strand, 36539645 - 36539812
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||||||| ||||||||||  ||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| | ||| |||||||||| ||    
T  36539645 ggtttacataggaaattgcaaacaaataatcaaaaaatttaaagaaattgcccaatttataggggattatataagaaatttatagggatttacataagaa 36539744  T
Q  271 attacaaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctgg 337  Q
    ||| || || ||||||| ||||||| |||| | |||||  ||| ||  ||||||||||||||||||||    
T  36539745 attgcataaaatttaggccggagcccgggcgactgcccgagctcgccaggccttagaaccgcccctgg 36539812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 175 - 336
Target Start/End: Original strand, 13856117 - 13856278
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||| ||| ||||||| || |||||     
T  13856117 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttatagggatttatataagaaattcatagggatttacacaagaaattg 13856215  T
Q  275 caaaatatttaggtcggagcctgggcaa-tgcccaggcttgctgggccttagaaccgcccctg 336  Q
     |||| |||| |  ||||||| |||||| ||||| || | || ||||||||||||||||||||    
T  13856216 aaaaaaatttggcccggagcccgggcaagtgccctgggtcgccgggccttagaaccgcccctg 13856278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 172 - 302
Target Start/End: Original strand, 20382533 - 20382662
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||||||  ||||||||||| ||||||||||||||||||| ||| |||||||||| |||    
T  20382533 gtttacataagaaattgcaagcaaataataaaaaaatctaaagaaatttcccaatttataggggtttatataagaaattcatagggatttacataagaaa 20382632  T
Q  272 ttacaaaatatttaggtcggagcctgggcaa 302  Q
    ||| |||| |||| || ||||||| ||||||    
T  20382633 tta-aaaaaatttgggccggagcccgggcaa 20382662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 175 - 337
Target Start/End: Complemental strand, 40846027 - 40845865
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||     
T  40846027 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattg 40845929  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctgg 337  Q
    ||||| ||||    |||| || |||| |||||||  | | || |||||||||||||||||||||    
T  40845928 caaaaaatttgacccggaacccgggcgaatgcccgaggtcgccgggccttagaaccgcccctgg 40845865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 279
Target Start/End: Original strand, 51336224 - 51336330
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||||||||| ||||||||  ||||||||||||||||    
T  51336224 gtttacgtaagaaattgcaagtaaataat-aaaaaatttaaagaaattgtcaaatttataaagatttatataaaaaattcaggagaatttacataaaaaa 51336322  T
Q  272 ttacaaaa 279  Q
    || |||||    
T  51336323 ttgcaaaa 51336330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 174 - 279
Target Start/End: Complemental strand, 19649485 - 19649379
Alignment:
Q  174 ttacataagaaattgcaagtaaataatc-aaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaat 272  Q
    ||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||  ||||||||||||||||||| ||  |||||||||| ||||    
T  19649485 ttacataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttataagggtttatataagaaattcatagcgatttacataagaaat 19649386  T
Q  273 tacaaaa 279  Q
    |||||||    
T  19649385 tacaaaa 19649379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 54546920 - 54547025
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaat 272  Q
    |||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||| ||||    
T  54546920 tttacataagaaattgtaagcaaataatcaaaaa-tctaaagaaattgtccaatttataggggtttatataagaaattcaaaggaatttacgtaagaaat 54547018  T
Q  273 tacaaaa 279  Q
    | |||||    
T  54547019 tgcaaaa 54547025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 279
Target Start/End: Original strand, 8926779 - 8926887
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||| ||||||||||||||||| ||||||||||||||| || |||||||| | ||||||||| ||||||||| |||||||||||||||||||||||  ||    
T  8926779 ggttaacataagaaattgcaagcaaataatcaaaaaatctacagaaattgccaaatttataggggtttatatcagaaattcagaggaatttacatatgaa 8926878  T
Q  271 attacaaaa 279  Q
    ||| |||||    
T  8926879 attgcaaaa 8926887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 175 - 337
Target Start/End: Original strand, 21853215 - 21853377
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| | ||||||||||||||||| ||| ||||||| || |||||     
T  21853215 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggttttatataagaaattcatagggatttacacaagaaattg 21853313  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctgg 337  Q
    ||||| |||| |  ||||||| || | | ||||| || | || |||||||||||||||||||||    
T  21853314 caaaaaatttggcccggagcccggccgagtgcccggggtcgccgggccttagaaccgcccctgg 21853377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 273
Target Start/End: Original strand, 5391475 - 5391572
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatt 273  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| || |||||    
T  5391475 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaatt 5391572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 23467604 - 23467507
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatt 273  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||    
T  23467604 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaatt 23467507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 175 - 346
Target Start/End: Complemental strand, 8950614 - 8950443
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    ||||||||||||| |||| ||||||| ||||||| ||||||||||| ||||||||||| | ||||||||||||||||| ||||||||||| || |||||     
T  8950614 tacataagaaatttcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcataggaatttacacaagaaattg 8950516  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctggatatatata 346  Q
    ||||| |||| |  | ||||| |||| | ||||| || | ||  ||||||||||||||||||  |||||||||    
T  8950515 caaaaaatttggcccagagcccgggcgagtgcccggggtcgccaggccttagaaccgcccctatatatatata 8950443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 6280474 - 6280352
Alignment:
Q  170 aggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaa 269  Q
    |||||||||||| |||| ||||| |||| |||||||| | |||| |||||||| |||||||||||||||||||||||||||||| | ||||||||||| |    
T  6280474 aggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataaga 6280376  T
Q  270 aattacaaaatatttaggtcggag 293  Q
    |||| || || ||||||| |||||    
T  6280375 aattgcacaaaatttaggccggag 6280352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 284
Target Start/End: Complemental strand, 22845476 - 22845364
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||| |||| |||||||||| ||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||  |||||||||||| ||    
T  22845476 ggtttatataaaaaattgcaagcaaataat-aaaaaatctaaagaaattgtcaaatttataggggtttatataagaaatttaggtgaatttacataagaa 22845378  T
Q  271 attacaaaatattt 284  Q
    ||| ||||| ||||    
T  22845377 attgcaaaaaattt 22845364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 44995079 - 44994970
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttata-gaggtttatataagaaattcagaggaatttacataaaaaatt 273  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||| | ||||||||||||||||||| ||| ||||||| || |||||    
T  44995079 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataaggggtttatataagaaattcatagggatttacacaagaaatt 44994981  T
Q  274 acaaaatattt 284  Q
     ||||| ||||    
T  44994980 gcaaaaaattt 44994970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 47889738 - 47889826
Alignment:
Q  171 ggtttacataagaaattg-caagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaa 258  Q
    ||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||||||||   ||||||||||||||||| |||||    
T  47889738 ggtttacattagaaattgtcaagtaaataataaaaaaatttaaagaaattgcccaatttataggaatttatataagaaattcataggaa 47889826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 172 - 295
Target Start/End: Original strand, 3178718 - 3178840
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    ||||||||| ||||||||||| ||||||  |||||| | |||||||||| ||||||||||||| ||||||||||||||||| ||| ||||||| || |||    
T  3178718 gtttacatacgaaattgcaagcaaataaaaaaaaaact-aaagaaattgcccaatttatagagatttatataagaaattcatagggatttacacaagaaa 3178816  T
Q  272 ttacaaaatatttaggtcggagcc 295  Q
    ||  |||| |||| || |||||||    
T  3178817 ttgaaaaaaatttgggccggagcc 3178840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 174 - 279
Target Start/End: Complemental strand, 19644441 - 19644334
Alignment:
Q  174 ttacataagaaattgcaagtaaataatc-aaaaaatttaaagaaa-ttgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    ||||||||||||||||||  |||||||| ||||||| |||| ||| |||| ||||||||| || ||||||||| ||||||| || |||||||||||||||    
T  19644441 ttacataagaaattgcaatcaaataatccaaaaaatctaaaaaaaattgttcaatttataaagatttatataaaaaattcatagcaatttacataaaaaa 19644342  T
Q  272 ttacaaaa 279  Q
    ||||||||    
T  19644341 ttacaaaa 19644334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 47315218 - 47315147
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatata 243  Q
    |||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||| ||||||||||||||    
T  47315218 gtttacataagaaattgcaaataaataatcaaaaaaattaaggaaattgttcaatttttagaggtttatata 47315147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 33103759 - 33103864
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaat 272  Q
    ||||||||||||||| |||| ||||||| |||||||||||| ||||| |||||||||||| |  |||||||||||||| |  ||||||||||||| ||||    
T  33103759 tttacataagaaattacaagcaaataat-aaaaaatttaaataaattatccaatttatagggacttatataagaaatttaagggaatttacataagaaat 33103857  T
Q  273 tacaaaa 279  Q
    | |||||    
T  33103858 tgcaaaa 33103864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 46685897 - 46685797
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    ||||| |||||||||||||||  ||||||| ||||||| ||||||||||||| |||||||||  |||||||||||||||| || || |||||||||| ||    
T  46685897 ggtttgcataagaaattgcaaacaaataat-aaaaaatataaagaaattgtcaaatttataggagtttatataagaaatttagggggatttacataagaa 46685799  T
Q  271 at 272  Q
    ||    
T  46685798 at 46685797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 279
Target Start/End: Original strand, 32352865 - 32352968
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||| ||| ||||||| ||||||| ||||||||||| | ||||||||| ||||||||||||||||||| ||| ||||| | || |||||     
T  32352865 tacataagaaattgtaagcaaataat-aaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcatagggatttatacaagaaattg 32352963  T
Q  275 caaaa 279  Q
    |||||    
T  32352964 caaaa 32352968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 50663177 - 50663255
Alignment:
Q  201 caaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaa 279  Q
    ||||||||  ||||||||| | |||||||||  ||||||||||||||||| |||||||| ||||||| ||||| |||||    
T  50663177 caaaaaatacaaagaaatttttcaatttataagggtttatataagaaatttagaggaatctacataagaaattgcaaaa 50663255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 39352244 - 39352314
Alignment:
Q  208 tttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaa 279  Q
    ||||||||||||||  ||||||||||| ||||||||||||||| |||| |||||| |||| ||||| |||||    
T  39352244 tttaaagaaattgttaaatttatagagatttatataagaaatttagagaaattta-ataagaaattgcaaaa 39352314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 791831 - 791906
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaatt 250  Q
    |||||||||||||||| |||   |||||||||||||| ||||||||||   ||||||||||   |||||||||||||||    
T  791831 gtttacataagaaattacaa---aataatcaaaaaatataaagaaattacgcaatttataggaatttatataagaaatt 791906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 36826069 - 36826021
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaatt 219  Q
    ||||||||||||||| |||||| |||| || ||||||||||||||||||    
T  36826069 ggtttacataagaaactgcaagcaaatcattaaaaaatttaaagaaatt 36826021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 335
Target Start/End: Original strand, 27642724 - 27642838
Alignment:
Q  222 ccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaatatttaggtcggagcctgggcaa-tgcccaggcttgctgggc 320  Q
    ||||||||||  | ||||||||||||||||| | | |||||||||| ||||| ||||| ||||  |  ||||||  ||||| |||||| ||| || ||||    
T  27642724 ccaatttataaggatttatataagaaattcaaaaggatttacataagaaattgcaaaaaatttgagcaggagcccaggcaactgcccaagctcgccgggc 27642823  T
Q  321 cttagaaccgcccct 335  Q
    |||||||| ||||||    
T  27642824 cttagaactgcccct 27642838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 39299837 - 39299900
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaa---aatttaaagaaattgtccaatttata 231  Q
    ||||||||| |||||||||| ||||| ||| ||||   || |||||||||||||||||||||||    
T  39299837 ggtttacatgagaaattgcacgtaaacaattaaaataaaaattaaagaaattgtccaatttata 39299900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 40500319 - 40500266
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaat-ttaaagaaattgtccaa 225  Q
    ||||||||| |||||||||| ||||||| ||||||  |||||||||||||||||    
T  40500319 tttacataaaaaattgcaagcaaataataaaaaaaaattaaagaaattgtccaa 40500266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 54378619 - 54378656
Alignment:
Q  194 aaataatcaaaaaatttaaagaaattgtccaatttata 231  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  54378619 aaataatcaaaaaatctaaataaattgtccaatttata 54378656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 171 - 336
Target Start/End: Original strand, 10112060 - 10112226
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||   |||||||||||||||| |||||||||||||||||||    
T  10112060 ggtttacataagaaattgcaaataaataatcaaaaaattaaaagaaattgtccaatttataagagtttatataagaaattaagaggaatttacataaaaa 10112159  T
Q  271 attacaaaatatttaggtcggagcctgggcaa-tgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||| ||||| | ||  | | ||||| |||||| || ||||||| || ||||||||||||||||||||    
T  10112160 attgcaaaaaaattgagccagagcccgggcaactgtccaggctcgccgggccttagaaccgcccctg 10112226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 175 - 336
Target Start/End: Original strand, 22324614 - 22324775
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| || ||||||    
T  22324614 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaatta 22324712  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| |||| |  ||||||| |||| | ||||| || |||| ||||||||||||||||||||    
T  22324713 caaaaaatttggcccggagcccgggcgagtgcccggggttgccgggccttagaaccgcccctg 22324775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 172 - 342
Target Start/End: Original strand, 42072443 - 42072613
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| || |||    
T  42072443 gtttacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaa 42072541  T
Q  272 ttacaaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctggatata 342  Q
    || ||||| | || |  ||||||| |||| | ||||| || | || ||||| ||||||||||||||| ||||    
T  42072542 ttgcaaaaaaattggcccggagcccgggcgagtgcccggggtcgccgggccatagaaccgcccctggctata 42072613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 21525376 - 21525484
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| || |||||     
T  21525376 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 21525474  T
Q  275 caaaatattt 284  Q
    ||||| ||||    
T  21525475 caaaaaattt 21525484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 175 - 337
Target Start/End: Original strand, 35806812 - 35806974
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||  ||||||| || |||||     
T  35806812 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttacacaagaaattg 35806910  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctgg 337  Q
    ||||| |||| |  ||||||| || | | ||||| || | || |||||||||||||||||||||    
T  35806911 caaaaaatttggcccggagcccggccgagtgcccggggtcgccgggccttagaaccgcccctgg 35806974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 19334799 - 19334909
Alignment:
Q  174 ttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatt 273  Q
    ||||||||||||||| ||| ||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||||||| | ||||||| |||| |||||    
T  19334799 ttacataagaaattgtaagcaaataataaaacaatttaaagaaattgtctaatttatagaggtttatataaaaaattcataagaatttatataagaaatt 19334898  T
Q  274 acaaaatattt 284  Q
     ||||| ||||    
T  19334899 gcaaaaaattt 19334909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 33934479 - 33934318
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| |||| |||||| ||||||||||| ||||||||||||||||||| ||||||||||| || |||||     
T  33934479 tacataagaaattgcaagcaaataat-aaaaaatataaaaaaattgcccaatttataggggtttatataagaaattcataggaatttacaaaagaaattg 33934381  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| |||| |   |||||| |||| | ||||| || | || |||||||| |||||||||||    
T  33934380 caaaaaatttggcctggagcccgggcgagtgcccggggtcgccgggccttaaaaccgcccctg 33934318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 26021413 - 26021522
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||  ||||||||||| ||||||||||||||||||| ||| ||||||| || |||||     
T  26021413 tacataagaaattgcaagcaaataataaaaaaatgtaaagaaattacccaatttataggggtttatataagaaattcatagggatttacaaaagaaattg 26021512  T
Q  275 caaaatattt 284  Q
    ||||| ||||    
T  26021513 caaaaaattt 26021522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 21488082 - 21488187
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaat 272  Q
    |||||||||||||||||||| || |||| ||||||| ||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||| || ||||    
T  21488082 tttacataagaaattgcaagcaa-taataaaaaaatctaaagaaattgtccaatttatcggggtttctataagaaattcaaaggaatttacacaagaaat 21488180  T
Q  273 tacaaaa 279  Q
    || ||||    
T  21488181 tataaaa 21488187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 175 - 336
Target Start/End: Original strand, 42013890 - 42014051
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||  |||||||||||||||||| ||| ||||||| || |||||     
T  42013890 tacataagaaattgcaagcaaataat-aaaaaatataaagaaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattg 42013988  T
Q  275 caaaatatttaggtcggagcctgggcaa-tgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| |||| |  || | || || ||| ||||| || | || ||||||||||||||||||||    
T  42013989 caaaaaatttggcccgaaacccggacaagtgcccggggtcgccgggccttagaaccgcccctg 42014051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 300
Target Start/End: Complemental strand, 2824295 - 2824168
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    ||||||||||||||||||||| ||||   |||| |||  ||| || ||| ||||||||||  || |||||||||||||| ||||||||||||||||||||    
T  2824295 gtttacataagaaattgcaagcaaatttgcaaataataaaaa-aatttgcccaatttataaggggttatataagaaatttagaggaatttacataaaaaa 2824197  T
Q  272 ttacaaaatatttaggtcggagcctgggc 300  Q
    || ||||| ||| ||||||||||| ||||    
T  2824196 ttgcaaaaaattcaggtcggagcccgggc 2824168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 24065288 - 24065367
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattca 252  Q
    ||||||||||||||||||||| ||||||| ||||||  ||||||||||| |||||||||||  ||||||||||||||||||    
T  24065288 gtttacataagaaattgcaagcaaataat-aaaaaagctaaagaaattgcccaatttataggagtttatataagaaattca 24065367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 338
Target Start/End: Complemental strand, 16591449 - 16591323
Alignment:
Q  212 aagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaatatttaggtcggagcctgggcaa-tgcccagg 310  Q
    ||||||||| ||||||||||| | ||||||||||||||||  || ||||||||||| ||||| ||||| ||||||| |||| || |||||| ||||||||    
T  16591449 aagaaattgcccaatttatagtgatttatataagaaattcttagaaatttacataagaaattgcaaaaaatttaggccggaacccgggcaactgcccagg 16591350  T
Q  311 cttgctgggccttagaaccgcccctgga 338  Q
    ||  ||  |||||||||||| |||||||    
T  16591349 ctccct-agccttagaaccgtccctgga 16591323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 279
Target Start/End: Complemental strand, 34697502 - 34697392
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatat----aagaaattcagaggaatttacataaa 268  Q
    |||||||||||||||||||| ||||||| |||||| |||||||||||   |||||||||||| |||||||    || |||  ||||| ||||||||||||    
T  34697502 tttacataagaaattgcaagcaaataataaaaaaaattaaagaaatttctcaatttatagagatttatataaaaaaaaaaaacagagaaatttacataaa 34697403  T
Q  269 aaattacaaaa 279  Q
    ||||| |||||    
T  34697402 aaattgcaaaa 34697392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 273
Target Start/End: Complemental strand, 43282964 - 43282864
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaat 272  Q
    |||||||||||||| ||||| ||||||| ||||  | ||| ||||||  ||||||||||| | ||||||||| ||||||||| |||||||||||| ||||    
T  43282964 tttacataagaaatagcaagcaaataataaaaatttctaatgaaattacccaatttatagggatttatataataaattcagaagaatttacataagaaat 43282865  T
Q  273 t 273  Q
    |    
T  43282864 t 43282864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 16523158 - 16523243
Alignment:
Q  210 taaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaatatttaggtcggagcc 295  Q
    ||||||| ||| ||||||||||| | ||||||||||||||||| ||| |||||||||  |||||  |||| |||| || |||||||    
T  16523158 taaagaagttgcccaatttatagggatttatataagaaattcatagggatttacatatgaaattgtaaaaaatttgggccggagcc 16523243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 23756549 - 23756600
Alignment:
Q  171 ggtttacataagaaatt--gcaagtaaataatcaaaaaatttaaagaaattg 220  Q
    |||||| ||||||||||  ||||| |||||||||||||||||||||||||||    
T  23756549 ggtttatataagaaattttgcaagcaaataatcaaaaaatttaaagaaattg 23756600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 2271239 - 2271326
Alignment:
Q  202 aaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaatatttaggtc 289  Q
    ||||||| ||||||||||  | ||| ||||| ||||||||||||||||||||    |||||||||| ||||| ||||| | |||||||    
T  2271239 aaaaaatctaaagaaattacctaatatataggggtttatataagaaattcagcatgatttacataagaaattgcaaaaaaattaggtc 2271326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 284
Target Start/End: Complemental strand, 16819090 - 16818975
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatt--taaagaaattgtccaatttatagaggtttatataagaaattcagagga-atttacataa 267  Q
    |||||| |||| |||||||||| ||||||| ||| | |   || |||||||  ||||||||||| ||||||||||||||||||| |||| ||||||| ||    
T  16819090 ggtttatataaaaaattgcaagcaaataataaaatactagatagagaaattacccaatttataggggtttatataagaaattca-aggagatttacaaaa 16818992  T
Q  268 aaaattacaaaatattt 284  Q
     ||||| ||||| ||||    
T  16818991 gaaattgcaaaaaattt 16818975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 172 - 284
Target Start/End: Complemental strand, 13103232 - 13103120
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    |||||||| |||||||||||| ||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13103232 gtttacattagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttataaaggtttatataagaaattcagaggaatttacataaaaaa 13103133  T
Q  272 ttacaaaatattt 284  Q
    || ||||| ||||    
T  13103132 ttgcaaaaaattt 13103120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 172 - 333
Target Start/End: Complemental strand, 28750764 - 28750602
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    |||||||||||||||| |||| |||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| |||    
T  28750764 gtttacataagaaattacaagcaaataatcaaaaaaattaaagaaattgcccaatttataggggtttatataagaaattcagaagaatttacataagaaa 28750665  T
Q  272 ttacaaaatatttaggtcggagcctgggcaa-tgcccaggcttgctgggccttagaaccgccc 333  Q
    || ||||| | || |  | ||||| | |||| ||||||| || || |||||||||||||||||    
T  28750664 ttgcaaaaaaattggcccagagcccgagcaattgcccagactcgccgggccttagaaccgccc 28750602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 24694761 - 24694600
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||  |||||||||||||||||| ||| ||||||| || |||||     
T  24694761 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattg 24694663  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| |||| |  ||||||| |||| | |||||||| |||| ||||||||||||||||||||    
T  24694662 caaaaaatttggcccggagcccgggcgagtgcccagggttgccgggccttagaaccgcccctg 24694600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 34103698 - 34103806
Alignment:
Q  170 aggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaa 269  Q
    ||||||||||||||||||||||  ||||||| ||||||| ||||||||||  ||||||||||  |||||||||||||||||||||||||||||||||| |    
T  34103698 aggtttacataagaaattgcaaacaaataat-aaaaaatctaaagaaatttcccaatttatacgggtttatataagaaattcagaggaatttacataata 34103796  T
Q  270 aattacaaaa 279  Q
    ||||||||||    
T  34103797 aattacaaaa 34103806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 214 - 332
Target Start/End: Complemental strand, 24497646 - 24497527
Alignment:
Q  214 gaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaatatttaggtcggagcctgggcaa-tgcccaggct 312  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |||| || ||||||||| |||| ||||||||||    
T  24497646 gaaattgcccaatttataggggtttatataagaaattcagaggaatttacacaaaaaattgcaaaaaatttgggccggagcctgtgcaactgcccaggct 24497547  T
Q  313 tgctgggccttagaaccgcc 332  Q
     || | ||||||||||||||    
T  24497546 cgccgagccttagaaccgcc 24497527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 294
Target Start/End: Original strand, 27863714 - 27863836
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataa-aaa 270  Q
    ||||||||||||||||||||  ||||||| ||||||| ||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||| |||    
T  27863714 gtttacataagaaattgcaaacaaataat-aaaaaatctaaagaaattgtccaatttataagggtttatataagaaattcagagaaatttacataagaaa 27863812  T
Q  271 attacaaaatatttaggtcggagc 294  Q
    ||| |||||  ||| |||||||||    
T  27863813 attgcaaaaagtttgggtcggagc 27863836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 340
Target Start/End: Complemental strand, 9231964 - 9231799
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||  ||||||| || |||||     
T  9231964 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttacacaagaaattg 9231866  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctggata 340  Q
    ||||| | || |  ||||||| |||| | ||||| || | || | ||||||||||||||||||||||    
T  9231865 caaaaaaattggcccggagcccgggcgagtgcccggggtcgccgagccttagaaccgcccctggata 9231799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 14309908 - 14309800
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| | ||||||||||||||||| ||| ||||||| || |||||     
T  14309908 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaattg 14309810  T
Q  275 caaaatattt 284  Q
    ||||| ||||    
T  14309809 caaaaaattt 14309800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 183 - 300
Target Start/End: Complemental strand, 1728035 - 1727919
Alignment:
Q  183 aaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaatat 282  Q
    |||||||||| ||||||| ||||||| |||||||||||  |||||||||| ||||||||||||||||||| ||| ||||||| || ||||| ||||| ||    
T  1728035 aaattgcaaggaaataat-aaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaat 1727937  T
Q  283 ttaggtcggagcctgggc 300  Q
    || |  ||||||||||||    
T  1727936 ttggcccggagcctgggc 1727919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 13627558 - 13627666
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    ||||||||||| | |||| ||||||| ||||||| |||||||||||  |||||||||| ||||||||||||||||||| ||| ||||||| || |||||     
T  13627558 tacataagaaagtacaagcaaataat-aaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattg 13627656  T
Q  275 caaaatattt 284  Q
    ||||| ||||    
T  13627657 caaaaaattt 13627666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 342
Target Start/End: Original strand, 11084666 - 11084774
Alignment:
Q  234 ggtttatataagaaattcagaggaatttacataaaaaattacaaaatatttaggtcggagcctgggcaatgcccaggcttgctgggccttagaaccgccc 333  Q
    ||||||||||||||||||| ||||||||||| || ||||| ||||| | || | ||||| || |||| |||||| || |  | |||||||||||||||||    
T  11084666 ggtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggctcggaacccgggcgatgcccggggtcaccgggccttagaaccgccc 11084765  T
Q  334 ctggatata 342  Q
    ||| |||||    
T  11084766 ctgtatata 11084774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 11212687 - 11212765
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattca 252  Q
    ||||||||||||||| |||| ||||||| ||||| | ||||||||||| ||||||||||| | |||||| || |||||||    
T  11212687 tttacataagaaattacaagcaaataattaaaaa-tctaaagaaattgcccaatttatagggatttatagaaaaaattca 11212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 24500815 - 24500767
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaatt 219  Q
    |||||||||| ||||||||||| ||||||| ||||||| ||||||||||    
T  24500815 ggtttacatatgaaattgcaagcaaataataaaaaaatctaaagaaatt 24500767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 11279556 - 11279634
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattca 252  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||||||  | ||||||||    ||||||||| |||||||    
T  11279556 tttacataagaaattgcaagcaaataat-aaaaaatctaaagaaattaccaaatttataagaatttatataaaaaattca 11279634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 8676785 - 8676735
Alignment:
Q  69 agaggatgtgatgcttaactggtatagtgtatagttgttatgatgtatata 119  Q
    |||||||||| ||  | ||| ||||||||||||||||||||||||||||||    
T  8676785 agaggatgtgttggctcactagtatagtgtatagttgttatgatgtatata 8676735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 7517031 - 7517083
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaa 225  Q
    ||||| |||||||||||||| |||| || ||||||| |||| |||||||||||    
T  7517031 tttacttaagaaattgcaagcaaatgataaaaaaatctaaaaaaattgtccaa 7517083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 8412757 - 8412717
Alignment:
Q  210 taaagaaattgtccaatttatagaggtttatataagaaatt 250  Q
    ||||||||||| |||||||||||  ||||||||||||||||    
T  8412757 taaagaaattgcccaatttataggcgtttatataagaaatt 8412717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 171 - 279
Target Start/End: Original strand, 42119635 - 42119743
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    ||||||||||||||||| |||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42119635 ggtttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataagaa 42119734  T
Q  271 attacaaaa 279  Q
    |||||||||    
T  42119735 attacaaaa 42119743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 37169143 - 37168982
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||     
T  37169143 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattg 37169045  T
Q  275 caaaatatttaggtcggagcctgggcaa-tgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| |||| |  ||||||| |||||| ||||| || | || ||||||||||||||||||||    
T  37169044 caaaaaatttggcccggagcccgggcaagtgcccggggtcgccgggccttagaaccgcccctg 37168982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 11856309 - 11856413
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | ||||||||||||||||||||  |||||||||| |||    
T  11856309 gtttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatataagaaattcagagcgatttacataagaaa 11856408  T
Q  272 ttaca 276  Q
    |||||    
T  11856409 ttaca 11856413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 36769188 - 36769067
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||||||| ||||||||||| ||||||||||||| | ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| ||    
T  36769188 ggtttacatatgaaattgcaagcaaataatcaaaaa-tctaaagaaattgcctaattcatagaggtttatataagaaattcagaggaatttacataagaa 36769090  T
Q  271 attacaaaatatttaggtcggag 293  Q
    ||| ||||| |||| || |||||    
T  36769089 attgcaaaaaatttgggccggag 36769067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 171 - 300
Target Start/End: Complemental strand, 8457078 - 8456949
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| || |||||||||||||||| ||| |||||||||| ||    
T  8457078 ggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattcatagggatttacataagaa 8456979  T
Q  271 attacaaaatatttaggtcggagcctgggc 300  Q
    |||  |||| |||| || ||||||| ||||    
T  8456978 attgaaaaaaatttgggccggagcccgggc 8456949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 175 - 338
Target Start/End: Original strand, 38397616 - 38397779
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| || |||||     
T  38397616 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 38397714  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctgga 338  Q
    ||||| |||| |  ||||||| |||| | ||||| || | || |||||||||||||||| |||||    
T  38397715 caaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcctctgga 38397779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 279
Target Start/End: Complemental strand, 614506 - 614399
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||||||| | ||||||||| | ||||||||| |||||||||||||||||||||| |||    
T  614506 gtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgccaaatttatagggatttatataaaaaattcagaggaatttacataagaaa 614407  T
Q  272 ttacaaaa 279  Q
    || |||||    
T  614406 ttgcaaaa 614399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 170 - 335
Target Start/End: Original strand, 27916152 - 27916318
Alignment:
Q  170 aggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaa 269  Q
    ||||||| ||||||||||||||  ||||||| ||||||| ||| |||||||  ||||||||||  ||||||||||||||||||||||||||||||||| |    
T  27916152 aggtttatataagaaattgcaaacaaataataaaaaaatctaatgaaattgctcaatttataggagtttatataagaaattcagaggaatttacataaga 27916251  T
Q  270 aattacaaaatatttaggtcggagcctgggcaa-tgcccaggcttgctgggccttagaaccgcccct 335  Q
    |||| ||||| ||||||| || ||||  | ||| | | ||||||||| ||||||| |||||| ||||    
T  27916252 aattgcaaaaaatttaggccgaagcccagacaatttctcaggcttgccgggcctttgaaccggccct 27916318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 10081159 - 10081260
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    ||||||||||||||||| ||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||| |||    
T  10081159 gtttacataagaaattgtaagcaaataataaaaaaatctaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacataagaaa 10081258  T
Q  272 tt 273  Q
    ||    
T  10081259 tt 10081260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 6174758 - 6174872
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagagg--tttatataagaaattcagaggaatttacataaa 268  Q
    |||||||||| ||||||||||| ||||||| ||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||| |||||||| |||     
T  6174758 ggtttacataggaaattgcaagcaaataat-aaaaaatataaagaaattgtccaatttataggggggtttatataagaaattcagaagaatttacgtaag 6174856  T
Q  269 aaattacaaaatattt 284  Q
    ||||||||||| ||||    
T  6174857 aaattacaaaaaattt 6174872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 178 - 337
Target Start/End: Complemental strand, 6257517 - 6257358
Alignment:
Q  178 ataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaa 277  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||| ||||||||||||| ||| ||||||| || ||||| |||    
T  6257517 ataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttgtataagaaattcatagggatttacacaagaaattgcaa 6257419  T
Q  278 aatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctgg 337  Q
    || |||| |  ||||||| |||| | ||||| || | || |||||||||||||||||||||    
T  6257418 aaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccctgg 6257358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 183 - 279
Target Start/End: Original strand, 10115185 - 10115281
Alignment:
Q  183 aaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaa 279  Q
    |||||||||| ||||||| ||||||| ||||||||||||| ||||||| | |||||||||||||||| ||||||||||||||||||||||| |||||    
T  10115185 aaattgcaagcaaataattaaaaaatctaaagaaattgtctaatttattggggtttatataagaaatccagaggaatttacataaaaaattgcaaaa 10115281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 172 - 284
Target Start/End: Complemental strand, 29491526 - 29491416
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    |||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| || ||||||||||| |||    
T  29491526 gtttgcataagaaattgcaagcaaataatcaaaaaatttaaag-aattgtccaatttatag-gggttatataagaaattcatagaaatttacataagaaa 29491429  T
Q  272 ttacaaaatattt 284  Q
    || ||||| ||||    
T  29491428 ttgcaaaagattt 29491416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 178 - 337
Target Start/End: Complemental strand, 39862594 - 39862435
Alignment:
Q  178 ataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaa 277  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| || ||||| |||    
T  39862594 ataagaaattgcaagcaaataat-aaaaaatctaaagaaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattgcaa 39862496  T
Q  278 aatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctgg 337  Q
    || | || |  ||||||  |||| | ||||| || | || |||||||||||||||||||||    
T  39862495 aaaaattggcccggagctcgggcgagtgcccggggtcgccgggccttagaaccgcccctgg 39862435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 175 - 337
Target Start/End: Original strand, 23218503 - 23218665
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| || |||||     
T  23218503 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 23218601  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctgg 337  Q
    |||||  ||| |  |||| || |||| | ||||| || | || |||||||||||||||||||||    
T  23218602 caaaaactttggcccggaacccgggcgagtgcccgggatcgccgggccttagaaccgcccctgg 23218665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 171 - 261
Target Start/End: Complemental strand, 9738098 - 9738008
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaattt 261  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||| ||| ||||    
T  9738098 ggtttacataagaaattgcaagcaaataaacaaaaaatctaaagaaattgtccaatttatagggatttatataagaaattcatagggattt 9738008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 171 - 273
Target Start/End: Complemental strand, 25560442 - 25560340
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||| |||||||||||||||| | | | |||||||||| ||    
T  25560442 ggtttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatataagaaatttataaggatttacataagaa 25560343  T
Q  271 att 273  Q
    |||    
T  25560342 att 25560340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 171 - 273
Target Start/End: Complemental strand, 33271384 - 33271283
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||| |||||||||| |||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||    
T  33271384 ggtttatataagaaattacaaacaaataat-aaaaaatataaagaaattgtccaatttatagaggtttatataagaaattcaacggaatttacataagaa 33271286  T
Q  271 att 273  Q
    |||    
T  33271285 att 33271283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 16618680 - 16618519
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||||  |||||||||||||||||| ||| ||||||| || |||||     
T  16618680 tacataagaaattgcaagcaaataat-aaaaaatataaaaaaattgtccaatttataggagtttatataagaaattcatagggatttacacaagaaattg 16618582  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
     |||| |||| |  ||||||| || | | ||||| || | || ||||||||||||||||||||    
T  16618581 taaaaaatttggcccggagcccggacgagtgcccggggtcgccgggccttagaaccgcccctg 16618519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 335
Target Start/End: Original strand, 15631631 - 15631792
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttata-gaggtttatataagaaattcagaggaatttacataaaaaatt 273  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||| ||| ||||| | || |||||    
T  15631631 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttatagggggtttatataagaaattcatagggatttatacaagaaatt 15631729  T
Q  274 acaaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccct 335  Q
      |||| |||| |   |||||| |||| | ||||| || | || |||||||||||||||||||    
T  15631730 gtaaaaaatttggcctggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccct 15631792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 273
Target Start/End: Complemental strand, 29790329 - 29790232
Alignment:
Q  174 ttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatt 273  Q
    ||||||||||||||  ||| ||||||||||||| |  |||||||||| |||||||||| |||||||||||||||||||| | |||||||||||| |||||    
T  29790329 ttacataagaaattaaaagcaaataatcaaaaact--aaagaaattgcccaatttataaaggtttatataagaaattcataagaatttacataagaaatt 29790232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 273
Target Start/End: Complemental strand, 10052606 - 10052513
Alignment:
Q  180 aagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatt 273  Q
    ||||||||||||| |||||||| |||| ||||||||||||  | |||||||||| ||||||||||| | |||||||| |||||||||| |||||    
T  10052606 aagaaattgcaagcaaataatctaaaattttaaagaaattacctaatttatagacgtttatataagtagttcagagggatttacataagaaatt 10052513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 15475507 - 15475408
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaat 272  Q
    ||||||||||||||| | || |||||||  ||||||||||||||||| | ||||||||| || ||||||||| ||||| |||| ||||||||||| ||||    
T  15475507 tttacataagaaattacgagaaaataatacaaaaatttaaagaaatttttcaatttatatagatttatataaaaaattaagagaaatttacataagaaat 15475408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 170 - 298
Target Start/End: Complemental strand, 3341235 - 3341108
Alignment:
Q  170 aggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatat-aagaaattcagaggaatttacataaa 268  Q
    |||||||||||| |||||| ||| ||||||||| ||||  ||||||||||  ||||||||||| || |||||| || ||||||||| ||||||||||||     
T  3341235 aggtttacataaaaaattgaaagcaaataatca-aaaagctaaagaaatttcccaatttataggggattatataaaaaaattcaga-gaatttacataag 3341138  T
Q  269 aaattacaaaatatttaggtcggagcctgg 298  Q
    ||||| ||||| |||| || | ||||||||    
T  3341137 aaattgcaaaaaatttgggccagagcctgg 3341108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 33188383 - 33188330
Alignment:
Q  226 tttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaa 279  Q
    ||||||| ||||||||||||||||| ||| |||||||||||| ||||| |||||    
T  33188383 tttataggggtttatataagaaatttagatgaatttacataagaaattgcaaaa 33188330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 19322110 - 19322058
Alignment:
Q  198 aatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaatt 250  Q
    ||||||||||| ||||| ||||| |||||||||||  ||||||||||||||||    
T  19322110 aatcaaaaaatctaaagtaattgcccaatttataggagtttatataagaaatt 19322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 10052645 - 10052598
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattg 220  Q
    |||||||||||||||||||| |||||||  |||| |||||||||||||    
T  10052645 tttacataagaaattgcaagcaaataatttaaaattttaaagaaattg 10052598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 171 - 298
Target Start/End: Complemental strand, 35322819 - 35322692
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| |||||| |||||||    
T  35322819 ggtttatataagaaattgcaagcaaataatcaaaaaatctaaagaaattgttcaatttatagaggtttatataagagattcagagaaatttatataaaaa 35322720  T
Q  271 attacaaaatatttaggtcggagcctgg 298  Q
    ||||||||| | || |||||||| ||||    
T  35322719 attacaaaaaaattgggtcggagactgg 35322692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 173 - 332
Target Start/End: Complemental strand, 19124851 - 19124691
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaat 272  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||  ||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  19124851 tttacataagaaattgtaagtaaataataaaaaaatttaaagaaattgatcaatttacagatgtttatataagaaattcagaggaatttacataagaaat 19124752  T
Q  273 tacaaaatatttaggtcggagcctgggcaa-tgcccaggcttgctgggccttagaaccgcc 332  Q
    | ||||| | ||||| ||||||| | |||| |||| || || || || |||||||||||||    
T  19124751 tgcaaaaaaattaggccggagcccgcgcaactgcctagactcgccggaccttagaaccgcc 19124691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 171 - 279
Target Start/End: Original strand, 50328809 - 50328917
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    ||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||    
T  50328809 ggtttacataaaaaattgcaagtgaataataaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattaagaggaatttacaaaagaa 50328908  T
Q  271 attacaaaa 279  Q
    ||| |||||    
T  50328909 attgcaaaa 50328917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 322663 - 322541
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaa----ttcagaggaatttaca-ta 266  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    |||||||||||||||| ||    
T  322663 gtttacataagaaattgcaagcaaataatcaaaaaatttaaagaaattgtccaatttataggggtttatataagaaattccttcagaggaatttacatta 322564  T
Q  267 aaaaattacaaaatatttaggtc 289  Q
    ||||||| ||||| |||| ||||    
T  322563 aaaaattgcaaaaaatttgggtc 322541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 172 - 273
Target Start/End: Complemental strand, 9742647 - 9742546
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    ||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| |||    
T  9742647 gtttacataagaaattgcatgaaaataatcaaaaaatctaaagaaattgcccaatttataggggttaatataagaaattcagaggaatttacataagaaa 9742548  T
Q  272 tt 273  Q
    ||    
T  9742547 tt 9742546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 171 - 300
Target Start/End: Complemental strand, 17888665 - 17888536
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| || |||||||||||||||| |||||||||||||| ||    
T  17888665 ggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattcataggaatttacataagaa 17888566  T
Q  271 attacaaaatatttaggtcggagcctgggc 300  Q
    |||  |||| |||| || ||||||| ||||    
T  17888565 attgaaaaaaatttgggccggagcccgggc 17888536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 175 - 337
Target Start/End: Original strand, 1535789 - 1535951
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| || |||||     
T  1535789 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 1535887  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctgg 337  Q
    ||||| |||| |  ||||||| |||| | ||||| || | || |||||||||||||||||||||    
T  1535888 caaaaaatttggcccggagcccgggcgagtgccccgggtcgccgggccttagaaccgcccctgg 1535951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 279
Target Start/End: Complemental strand, 12792345 - 12792238
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    ||||| |||||||||| |||| |||||||| |||||| ||||| ||||| ||||||||||| |||||||||||||||||||||| ||||||||||| |||    
T  12792345 gtttatataagaaatttcaagcaaataatctaaaaatctaaagtaattgcccaatttataggggtttatataagaaattcagagaaatttacataagaaa 12792246  T
Q  272 ttacaaaa 279  Q
    ||||||||    
T  12792245 ttacaaaa 12792238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 333
Target Start/End: Original strand, 31377403 - 31377565
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||||||||||||||||||| ||||| | ||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||||| ||    
T  31377403 ggtttacataagaaattgcaagcaaatagttaaaaaatctaaagaaattgcccaatttatagagggttatataagaaattcatagggatttacataagaa 31377502  T
Q  271 attacaaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgccc 333  Q
    |||  |||| |||| || ||||||| |||| | ||||| || | || ||||| |||||||||||    
T  31377503 att-gaaaaaatttgggccggagcccgggcgagtgcccggggtcgccgggccatagaaccgccc 31377565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 170 - 300
Target Start/End: Original strand, 20818579 - 20818709
Alignment:
Q  170 aggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaa 269  Q
    ||||||||||||||||||||||  ||||||||||||||| |||| |||||| |||||||||||  |||||||||||||||||| ||| ||||||| || |    
T  20818579 aggtttacataagaaattgcaaacaaataatcaaaaaatctaaaaaaattgaccaatttataggagtttatataagaaattcatagggatttacaaaaga 20818678  T
Q  270 aattacaaaatatttaggtcggagcctgggc 300  Q
    |||| ||||| |||| |||| ||||| ||||    
T  20818679 aattgcaaaaaatttgggtcagagcccgggc 20818709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 36012295 - 36012135
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    ||||||| |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||     
T  36012295 tacataaaaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattg 36012197  T
Q  275 caaaatatttaggtcggagcctgggcaatgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| |||| |  || |||| |   | |||||||| | || ||||||||||||||||||||    
T  36012196 caaaaaatttggcccgaagcccgacgagtgcccagggtcgccgggccttagaaccgcccctg 36012135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 10094495 - 10094395
Alignment:
Q  184 aattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaatatt 283  Q
    ||||||||| ||||||||||||||| |||| |||||  ||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||    
T  10094495 aattgcaagcaaataatcaaaaaatctaaataaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattacaaaaaatt 10094396  T
Q  284 t 284  Q
    |    
T  10094395 t 10094395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 336
Target Start/End: Original strand, 49284375 - 49284536
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||  ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| || |||||     
T  49284375 tacataagaaattgcaaacaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 49284473  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| |||| |  ||||||| || | | ||||| || | ||||||||||||||||| |||||    
T  49284474 caaaaaatttggcccggagcccggacgagtgcccgggttcgctgggccttagaaccgtccctg 49284536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 180 - 336
Target Start/End: Complemental strand, 16338318 - 16338162
Alignment:
Q  180 aagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaa 279  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||| |||||||| |||||    
T  16338318 aagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaa 16338220  T
Q  280 tatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
     | || |  ||||  | |||| ||||||| || | || ||||||||||||||||||||    
T  16338219 aaattggcccggaatccgggcgaatgcccggggtcgccgggccttagaaccgcccctg 16338162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 25954768 - 25954876
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||  |||||||||||||||||| ||||||||||| || |||||     
T  25954768 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggagtttatataagaaattcataggaatttacacaagaaattg 25954866  T
Q  275 caaaatattt 284  Q
    ||||| ||||    
T  25954867 caaaaaattt 25954876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 173 - 294
Target Start/End: Original strand, 46474009 - 46474130
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaat 272  Q
    ||||||||||||||| |||| |||||||  |||||| |||||||||||| |||||||||  ||||||||||| ||||||| |||||||||||||| ||||    
T  46474009 tttacataagaaattacaagcaaataatacaaaaatctaaagaaattgtacaatttatatgggtttatataaaaaattcacaggaatttacataagaaat 46474108  T
Q  273 tacaaaatatttaggtcggagc 294  Q
    | ||||| |||| || ||||||    
T  46474109 tgcaaaaaatttgggccggagc 46474130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 46583651 - 46583554
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatt 273  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| | ||||||||| ||||||||||||||||||| ||| ||||||| ||||||||    
T  46583651 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcatagggatttacacaaaaaatt 46583554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 11054465 - 11054577
Alignment:
Q  170 aggtttacataagaaattgcaagtaaataa-tcaaaaaatt--taaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacata 266  Q
    ||||||||||||||||||||||| |||||| | |||||| |  |||||| |||| ||||||||||||||||||||||||||||||| ||| |||||||||    
T  11054465 aggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttatataagaaattcatagggatttacata 11054564  T
Q  267 aaaaattacaaaa 279  Q
    | ||||| |||||    
T  11054565 agaaattgcaaaa 11054577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 34241011 - 34241119
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| || |||| || |||||     
T  34241011 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatctacacaagaaattg 34241109  T
Q  275 caaaatattt 284  Q
    ||||| ||||    
T  34241110 caaaaaattt 34241119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 47084056 - 47084149
Alignment:
Q  202 aaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaatatttaggtcggagcc 295  Q
    ||||||| ||||||||||  ||||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||| |||||||    
T  47084056 aaaaaatctaaagaaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattgcaaaaaatttaggccggagcc 47084149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 175 - 339
Target Start/End: Complemental strand, 37801374 - 37801210
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||| ||| ||||||||||| | ||||||||| ||||||| || |||||||| || |||||     
T  37801374 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaatttgcccaatttatagggatttatataaaaaattcatagaaatttacacaagaaattg 37801276  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctggat 339  Q
    ||||| ||||||  ||||||| || | ||||||   | | |  |||||||||||||||||||||||    
T  37801275 caaaaaatttagcccggagcccggacgaatgcctgagatcgtcgggccttagaaccgcccctggat 37801210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 170 - 336
Target Start/End: Original strand, 35018949 - 35019114
Alignment:
Q  170 aggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaa 269  Q
    |||| |||||||||||||||||| ||||||| ||||||| ||||||||||  | ||||||||  ||||||||||||||||||| ||| ||||||| || |    
T  35018949 aggtgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattacctaatttataagggtttatataagaaattcatagg-atttacacaaga 35019046  T
Q  270 aattacaaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||  |||| |||| |  | ||||| |||| | |||||||| | || ||||||||||||||||||||    
T  35019047 aattgtaaaaaatttggcccagagcccgggcgagtgcccagggtcgccgggccttagaaccgcccctg 35019114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 273
Target Start/End: Original strand, 52632536 - 52632633
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatt 273  Q
    |||||||||||||||||| ||||| | ||||||| ||||||||||| ||||||||||| | ||||||||||||||||| ||| ||||||| || |||||    
T  52632536 tacataagaaattgcaagcaaatatt-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaatt 52632633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 54090193 - 54090286
Alignment:
Q  171 ggtttacataagaaa-ttgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttaca 264  Q
    ||||||||||| ||| ||||||| ||||||| ||||||| |||| |||||| ||||||||||   |||||||||| ||||||||||| |||||||    
T  54090193 ggtttacataaaaaaattgcaagcaaataat-aaaaaatctaaaaaaattgcccaatttataagagtttatataataaattcagagggatttaca 54090286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 5780846 - 5780790
Alignment:
Q  194 aaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaatt 250  Q
    ||||||| ||||||||||||||||||| ||||||||||  | |||||||||||||||    
T  5780846 aaataataaaaaaatttaaagaaattgcccaatttataaggatttatataagaaatt 5780790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 24991966 - 24992014
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaatt 219  Q
    ||||||||||||||||||| || ||||||||| ||||| ||||||||||    
T  24991966 ggtttacataagaaattgccagcaaataatcataaaatctaaagaaatt 24992014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 287
Target Start/End: Original strand, 33982015 - 33982133
Alignment:
Q  171 ggtttacataagaaattgcaagtaaa--taatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaa 268  Q
    ||||||||||| |||||||||| |||  || | | | ||| |||||||||| || ||||||||   |||||||||||||||| ||||| ||||||| ||     
T  33982015 ggtttacataaaaaattgcaagcaaaaatattaatacaatctaaagaaattatctaatttataagagtttatataagaaatttagagggatttacaaaag 33982114  T
Q  269 aaattacaaaatatttagg 287  Q
    |||||  |||| |||||||    
T  33982115 aaattttaaaaaatttagg 33982133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 16338354 - 16338310
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattg 220  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||    
T  16338354 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattg 16338310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 171 - 279
Target Start/End: Original strand, 40780068 - 40780177
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagag-gtttatataagaaattcagaggaatttacataaaa 269  Q
    |||||||||||||||||||||| ||||||| |||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |    
T  40780068 ggtttacataagaaattgcaagcaaataattaaaaaatttaaaaaaattgtcaaatttatagggtgtttatataagaaattcagaggaatttacataaga 40780167  T
Q  270 aattacaaaa 279  Q
    ||||||||||    
T  40780168 aattacaaaa 40780177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 175 - 336
Target Start/End: Original strand, 29846460 - 29846621
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| || |||||     
T  29846460 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 29846558  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| |||| |  ||||||| |||| | ||||| || | |  ||||||||||||||||||||    
T  29846559 caaaaaatttggcccggagcccgggcgagtgcccggggtcgtcgggccttagaaccgcccctg 29846621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 40277398 - 40277237
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| | ||||||||||||||| | ||| ||||||||||||||||     
T  40277398 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatttatagggatttacataaaaaattg 40277300  T
Q  275 caaaatatttaggtcggagcctgggcaa-tgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| |||| |  ||||||| || ||| ||||| || | || ||||||||||||||||||||    
T  40277299 caaaaaatttggcccggagcccggacaagtgcccggggtcgccgggccttagaaccgcccctg 40277237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 42769868 - 42769707
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| || |||||     
T  42769868 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 42769770  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| |||| |  ||||||| |||| | ||||| || | || ||||||||||||||||||||    
T  42769769 caaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccctg 42769707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 172 - 297
Target Start/End: Complemental strand, 14539818 - 14539693
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    ||||| ||||||||||||||| ||||||| ||||||| ||||||||||| | |||||||||   ||||||||||||||||||||||| |||||||| |||    
T  14539818 gtttatataagaaattgcaagaaaataataaaaaaatctaaagaaattgcctaatttataggaatttatataagaaattcagaggaaattacataagaaa 14539719  T
Q  272 ttacaaaatatttaggtcggagcctg 297  Q
    || ||||| |||| |||||| |||||    
T  14539718 ttgcaaaaaatttgggtcggggcctg 14539693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 19181566 - 19181674
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| || |||||     
T  19181566 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattg 19181664  T
Q  275 caaaatattt 284  Q
    ||||| ||||    
T  19181665 caaaaaattt 19181674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 338
Target Start/End: Complemental strand, 14186548 - 14186385
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||| | ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| || ||||||    
T  14186548 tacataagaaattgcaagcaaataat-aaaaagtgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaatta 14186450  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctgga 338  Q
    ||||| |||| |  ||||||  |||| | ||||  || | || ||||||||||||||||||||||    
T  14186449 caaaaaatttggcccggagctcgggcgagtgcctggggtcgccgggccttagaaccgcccctgga 14186385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 3956584 - 3956687
Alignment:
Q  170 aggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaa 269  Q
    ||||||||||  ||||||||||| ||||||| ||||| |||||||||||||||||||||| || ||||||||||| ||||||| ||| ||||||||||||    
T  3956584 aggtttacatttgaaattgcaagcaaataataaaaaattttaaagaaattgtccaatttacaggggtttatataataaattcatagggatttacataaaa 3956683  T
Q  270 aatt 273  Q
    ||||    
T  3956684 aatt 3956687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 14942154 - 14941993
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| || |||||     
T  14942154 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 14942056  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| |||| |  ||||||| |||| | || || || | || | ||||||||||||||||||    
T  14942055 caaaaaatttggcccggagcccgggcgagtgtccggggtcgccgagccttagaaccgcccctg 14941993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 173 - 337
Target Start/End: Complemental strand, 41674820 - 41674655
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatt-taaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    |||| ||||||||||||||| ||||| | |||||| | ||||||||||||||||||||||  ||||||||||| ||||||||||  |||||||||| |||    
T  41674820 tttatataagaaattgcaagcaaatagttaaaaaaatctaaagaaattgtccaatttataagggtttatataaaaaattcagagagatttacataagaaa 41674721  T
Q  272 ttacaaaatatttaggtcggagcctgggcaa-tgcccaggcttgctgggccttagaaccgcccctgg 337  Q
    || || || | || ||||||||||| | ||| |||||||||| |  ||||||||||||| |||||||    
T  41674720 ttgcataaca-ttgggtcggagcctcgacaactgcccaggctcgtcgggccttagaaccacccctgg 41674655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 28321818 - 28321710
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||| ||||||||||| ||| |||||||||||||||| || ||||||| ||||||||||  ||||||||||||| ||||||  |||||||||||| ||    
T  28321818 ggtttatataagaaattggaagcaaataatcaaaaaattcaatgaaattgcccaatttataagggtttatataagatattcaggagaatttacataagaa 28321719  T
Q  271 attacaaaa 279  Q
    ||| |||||    
T  28321718 attgcaaaa 28321710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 279
Target Start/End: Original strand, 43139760 - 43139868
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatt-taaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    ||||| ||||||||||||||| ||||||| |||||| | |||||||||||  |||||||||| ||||||||||||||||| ||||||| |||||||| ||    
T  43139760 gtttatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgctcaatttataggggtttatataagaaattaagaggaacttacataagaa 43139859  T
Q  271 attacaaaa 279  Q
    ||| |||||    
T  43139860 attgcaaaa 43139868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 1387402 - 1387312
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaattta 262  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||||||||  ||||||||||| ||||||| ||||||||||| ||| |||||    
T  1387402 ggtttacataagaaattgcaagcaaataat-aaaaaatctaaagaaattacccaatttataggggtttatctaagaaattcatagggattta 1387312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 6318563 - 6318471
Alignment:
Q  182 gaaattgcaagtaaataatcaaaaaatt-taaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatt 273  Q
    ||||||||||| ||||||| |||||| | ||||||||||| ||||||||||| | ||||||||||||||||| ||| |||||||||| |||||    
T  6318563 gaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacataagaaatt 6318471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 23685485 - 23685406
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaatt 250  Q
    |||||||||||||||||||||| |||||||||||| || |||| |||||||| ||||||||  | |||||||||||||||    
T  23685485 ggtttacataagaaattgcaagcaaataatcaaaatatataaataaattgtcaaatttataaggatttatataagaaatt 23685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 273
Target Start/End: Original strand, 33009685 - 33009788
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatca-aaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaa 269  Q
    ||||||||||| |||||||||| ||||||| | |||||| ||||||||||||||||||||||  | ||||||||| ||||||| ||| ||||| |||| |    
T  33009685 ggtttacataaaaaattgcaagcaaataataataaaaatctaaagaaattgtccaatttataaggatttatataacaaattcatagggatttatataaga 33009784  T
Q  270 aatt 273  Q
    ||||    
T  33009785 aatt 33009788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 279
Target Start/End: Original strand, 2888054 - 2888162
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||||||||||  |||| || || |||| ||||||| |||| ||||||| ||||||||||  |||||||||| ||||||| ||  |||||||||| ||    
T  2888054 ggtttacataagactttgctagcaattaataaaaaaatctaaaaaaattgttcaatttataggagtttatataaaaaattcatagagatttacataagaa 2888153  T
Q  271 attacaaaa 279  Q
    |||||||||    
T  2888154 attacaaaa 2888162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 25665244 - 25665316
Alignment:
Q  178 ataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaatt 250  Q
    |||| |||||||||| |||||||||||||| |||||||||||  |||||||||| | ||||||||||||||||    
T  25665244 ataaaaaattgcaagcaaataatcaaaaaacttaaagaaattacccaatttataaatgtttatataagaaatt 25665316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 3597973 - 3597903
Alignment:
Q  179 taagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaatt 250  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |||| | ||||||||    
T  3597973 taagaaattgcaagtaaataat-aaaaaatgtaaagaaattgtccaatttatagggatttacacaagaaatt 3597903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 30477705 - 30477634
Alignment:
Q  32 agaggtgcagaggatcaacaccacaattgttcactagagaggatgtgatgcttaactggtatagtgtatagtt 104  Q
    |||| |||||||||||||||||||||||| |||||| ||| ||||||||| |||||| ||||| | |||||||    
T  30477705 agagatgcagaggatcaacaccacaattgatcactataga-gatgtgatggttaactagtataatatatagtt 30477634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 32486258 - 32486323
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtt 237  Q
    ||||| ||||||||||||||| ||||||| ||||||| | || |||||  ||||||||||| ||||    
T  32486258 gtttatataagaaattgcaagcaaataattaaaaaatcttaaaaaattacccaatttataggggtt 32486323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 44164853 - 44164692
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| || |||||||| || |||||     
T  44164853 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagaaatttacacaagaaattg 44164755  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| |||| |  ||||||| |||| | ||||| || | || ||||||||||||||||||||    
T  44164754 caaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccctg 44164692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 175 - 337
Target Start/End: Complemental strand, 29556049 - 29555887
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || |||||     
T  29556049 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcataggaatttacacaagaaattg 29555951  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctgg 337  Q
      ||| | || |  ||||| | |||| | |||||||| | |||||||| |||||||||||||||    
T  29555950 tcaaaaaattggcccggaggccgggcgagtgcccagggtcgctgggccatagaaccgcccctgg 29555887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 175 - 336
Target Start/End: Original strand, 34707134 - 34707295
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| || |||||     
T  34707134 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 34707232  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
    ||||| |||| |  ||||||| |||| | ||||| || | || ||| ||||||||||||||||    
T  34707233 caaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggtcttagaaccgcccctg 34707295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 171 - 295
Target Start/End: Complemental strand, 17303230 - 17303105
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatt-taaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaa 269  Q
    |||||||||||||||||||||| ||||||| |||||| | ||||||||||| |||||||| |  ||||||||||||||||||| |||||||||||||| |    
T  17303230 ggtttacataagaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttacaagggtttatataagaaattcataggaatttacataaga 17303131  T
Q  270 aattacaaaatatttaggtcggagcc 295  Q
    |||| ||||| | || ||||||||||    
T  17303130 aattgcaaaaaaattgggtcggagcc 17303105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 19334676 - 19334567
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatt-taaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaa 269  Q
    |||||| ||||||||||||||| ||||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |    
T  19334676 ggtttatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcataggtatttacataaga 19334577  T
Q  270 aattacaaaa 279  Q
    |||| |||||    
T  19334576 aattgcaaaa 19334567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 279
Target Start/End: Original strand, 10334191 - 10334299
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||||||||||||||||||||| ||||| | |||| || ||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||| ||    
T  10334191 ggtttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcccaatttataagagtttatataagaaattcagaggaatttacataagaa 10334290  T
Q  271 attacaaaa 279  Q
    ||| |||||    
T  10334291 attgcaaaa 10334299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 346
Target Start/End: Complemental strand, 29238253 - 29238082
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||| ||| ||||||| ||||||| |||||||||| |||||||| ||| ||||||||||||||||||| ||| ||||||| || |||||     
T  29238253 tacataagaaattgtaagcaaataat-aaaaaatgtaaagaaattttccaatttttaggggtttatataagaaattcatagggatttacacaagaaattg 29238155  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctggatatatata 346  Q
    ||||| | || |  ||||||| |||| | ||||| || |||| |||||||||||||||||||  |||||||||    
T  29238154 caaaaaaattggcccggagcccgggcgagtgcccggggttgccgggccttagaaccgcccctatatatatata 29238082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 279
Target Start/End: Complemental strand, 29981223 - 29981120
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| || |||||     
T  29981223 tacataagaaattgcaagcaaataat-aaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcatagggatttacacaagaaattg 29981125  T
Q  275 caaaa 279  Q
    |||||    
T  29981124 caaaa 29981120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 173 - 273
Target Start/End: Complemental strand, 33057770 - 33057670
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaat 272  Q
    |||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||||||| || |||||||||||||||| ||| |||||||||| ||||    
T  33057770 tttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatataagaaattcatagggatttacataagaaat 33057671  T
Q  273 t 273  Q
    |    
T  33057670 t 33057670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 175 - 337
Target Start/End: Original strand, 10576691 - 10576853
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| || |||||     
T  10576691 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 10576789  T
Q  275 caaaatatttaggtcggagcctggg-caatgcccaggcttgctgggccttagaaccgcccctgg 337  Q
    ||||| |||| |  ||||||| |||  | ||||| || | || || ||||||||||||||||||    
T  10576790 caaaaaatttggcccggagcccgggtgagtgcccggggtcgccggaccttagaaccgcccctgg 10576853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 175 - 337
Target Start/End: Original strand, 34259536 - 34259698
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| || |||||     
T  34259536 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 34259634  T
Q  275 caaaatatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctgg 337  Q
    ||||| | || |  ||||||| |||| | ||||| |  | || |||||||||||||||||||||    
T  34259635 caaaaaaattggcccggagcccgggcgagtgcccggagtcgccgggccttagaaccgcccctgg 34259698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 24320549 - 24320441
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||| || |||||     
T  24320549 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcgtaggaatttacacaagaaattg 24320451  T
Q  275 caaaatattt 284  Q
    ||||| ||||    
T  24320450 caaaaaattt 24320441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 32876640 - 32876532
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaatta 274  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| || |||| || |||||     
T  32876640 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatctacacaagaaattg 32876542  T
Q  275 caaaatattt 284  Q
    ||||| ||||    
T  32876541 caaaaaattt 32876532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 202 - 279
Target Start/End: Original strand, 15017817 - 15017894
Alignment:
Q  202 aaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaa 279  Q
    ||||||| ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||| |||||    
T  15017817 aaaaaatctaaagaaattgtccaatttatacgcgtttatataagaaattcagaggaatttacataagaaattgcaaaa 15017894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 26284492 - 26284385
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcaga-ggaatttacataaaa 269  Q
    |||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||   |||| ||||||||||||||| ||| ||||||||| |    
T  26284492 ggtttacaaaagaaattgcaagaaaataat-aaaaaatctaaagaaattgtccaatttatactagttt-tataagaaattcagagggattttacataaga 26284395  T
Q  270 aattacaaaa 279  Q
    |||| |||||    
T  26284394 aattgcaaaa 26284385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 9770682 - 9770780
Alignment:
Q  180 aagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaa 279  Q
    ||||||||||||| ||||||||||||  | |||||||||||||||||| |||| ||||||||||||||||||||    |||||||||| ||||| |||||    
T  9770682 aagaaattgcaagcaaataatcaaaag-tctaaagaaattgtccaattcatagtggtttatataagaaattcaggatgatttacataagaaattgcaaaa 9770780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 43342486 - 43342548
Alignment:
Q  234 ggtttatataagaaattcagaggaatttacataaaaaattac-aaaatatttaggtcggagcc 295  Q
    |||||||||||||||||||||||||||||||||| ||||| | |||| | |||||||||||||    
T  43342486 ggtttatataagaaattcagaggaatttacataagaaattgcaaaaaaaattaggtcggagcc 43342548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 23032164 - 23032117
Alignment:
Q  226 tttatagaggtttatataagaaattcagaggaatttacataaaaaatt 273  Q
    ||||||||||||||||||| || |||||||| ||||||||||||||||    
T  23032164 tttatagaggtttatataaaaatttcagagggatttacataaaaaatt 23032117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 2702335 - 2702283
Alignment:
Q  171 ggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtcc 223  Q
    |||||||||||||||||||| | ||||||| ||||||| |||| |||||||||    
T  2702335 ggtttacataagaaattgcatgaaaataataaaaaaatctaaaaaaattgtcc 2702283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 23032238 - 23032186
Alignment:
Q  173 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaa 225  Q
    |||| |||| ||||| |||| ||||||||||||||| ||||||||||||||||    
T  23032238 tttagataaaaaattacaagcaaataatcaaaaaatctaaagaaattgtccaa 23032186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 41853145 - 41853226
Alignment:
Q  170 aggtttacataagaaattgcaagtaaataatc-aaaaaatttaaagaaattgtccaatttatagaggtttatataagaaatt 250  Q
    ||||||| |||  |||||||||| |||||||| ||||||| |||| ||||||||||| ||||||   |||| ||||||||||    
T  41853145 aggtttatatagaaaattgcaagcaaataatcaaaaaaatctaaaaaaattgtccaacttataggaatttaaataagaaatt 41853226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 279
Target Start/End: Complemental strand, 34566 - 34459
Alignment:
Q  172 gtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaa 271  Q
    ||||||||||||||||| ||| ||||||||||||||| |||||||| |||||||||||||||| |||||||||  |||||||||| |||||||||| |||    
T  34566 gtttacataagaaattgtaagcaaataatcaaaaaatctaaagaaactgtccaatttatagagatttatataaagaattcagagggatttacataagaaa 34467  T
Q  272 ttacaaaa 279  Q
    || |||||    
T  34466 ttgcaaaa 34459  T

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Target: scaffold0079 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 180 - 336
Target Start/End: Original strand, 54542 - 54698
Alignment:
Q  180 aagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaa 279  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||| |||||||| |||||    
T  54542 aagaaattgcaagcaaataat-aaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaa 54640  T
Q  280 tatttaggtcggagcctgggc-aatgcccaggcttgctgggccttagaaccgcccctg 336  Q
     | || |  ||||  | |||| ||||||| || | || ||||||||||||||||||||    
T  54641 aaattggcccggaatccgggcgaatgcccggggtcgccgggccttagaaccgcccctg 54698  T

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Target: scaffold0079; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 54506 - 54550
Alignment:
Q  175 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattg 220  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||    
T  54506 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattg 54550  T

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Target: scaffold0086 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 20916 - 20838
Alignment:
Q  201 caaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaaattacaaaa 279  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||    
T  20916 caaaaaatctaaaaaaattgtccaatttatagagctttatataagaaattcagaggaatttacataagaaattgcaaaa 20838  T

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Target: scaffold0620 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 336
Target Start/End: Original strand, 2229 - 2322
Alignment:
Q  246 aaattcagaggaatttacataaaaaattacaaaatatttaggtcggagcctgggcaa-tgcccaggcttgct--gggccttagaaccgcccctg 336  Q
    ||||| ||| |||||||||||| ||||||||||| |||| |||||||| |||| ||| || ||||||| |||  ||||||||||||||||||||    
T  2229 aaatttagaagaatttacataagaaattacaaaaaatttgggtcggagtctggacaactgtccaggctcgctgggggccttagaaccgcccctg 2322  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 85547 - 85612
Alignment:
Q  205 aaatttaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacataaaaa 270  Q
    |||| ||||||||||||||||||||||| | ||| ||||| ||||| || | |||||||| |||||    
T  85547 aaatgtaaagaaattgtccaatttatagggatttttataaaaaatttagggaaatttacaaaaaaa 85612  T

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