View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18993_low_54 (Length: 365)
Name: NF18993_low_54
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 351
Target Start/End: Complemental strand, 12031927 - 12031588
Alignment:
| Q |
16 |
gatgattcaatatatggtaacataaacggcttgatttattctagagatattgcaatctctttcttt----gtgttaaagaatgagatgtctaaaatttga |
111 |
Q |
| |
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| T |
12031927 |
gatgattcaatatatggtaacataaacgggttgatttattctagagatattacaatctctttctttctttgtgttaaagaatgagatgtctaaaaattga |
12031828 |
T |
|
| Q |
112 |
tgcctttgtcaattatgcaacaagataaaagcttgtgtgaatttccctactttaaattcatttacaaatctgaaaatcatataaacacaagagaaacaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12031827 |
tgcctttgtcaattatgcaacaagataaaagcttgtgtgaatttccctactttaaattcatttacaaatctgaaaatcatataaacacaagagaaacaaa |
12031728 |
T |
|
| Q |
212 |
tttgaaacaagagaaacaaatttgagaattataaatatgtttcatggaagtattactttgttttgttgaatgctttattaagtttcttacattcaggatg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12031727 |
tttgaaacaagagaaacaaatttgagaattataaatatgtttcatggaagtattaaattgttttgttgaatgctttattaagtttcttgcattcaggata |
12031628 |
T |
|
| Q |
312 |
tgtaattttttaaatatatttcatggaagtattaaatgat |
351 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||| |
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| T |
12031627 |
tgtaatattttaaatatatttcatggaagtattaaatgat |
12031588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 15978071 - 15978420
Alignment:
| Q |
16 |
gatgattcaatatatggtaacataaacggcttgatttattctagagatattgcaatctctttctttgtgttaaa------------gaatgagatgtcta |
103 |
Q |
| |
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| T |
15978071 |
gatgattcaatgtattgtaacataaatggcttgatttattcttgagagattgcaatctctttctttgtgttaaatggacgtttaaagaatgagatgtcta |
15978170 |
T |
|
| Q |
104 |
aaatttgatgcctttgtcaattatgcaacaagataaaagctt------gtgtg------aatttccctactttaaat-tcatttacaaatctgaaaatca |
190 |
Q |
| |
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|| ||||||| ||||||||| |||||||||||||||||||| || || ||| | ||| | ||| |||||||||||| || |||||| |
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| T |
15978171 |
gaaattgatgcatttgtcaatcatgcaacaagataaaagctttattaagtctgtctataaatctgtctaataaaaaaatcatttacaaatatggaaatca |
15978270 |
T |
|
| Q |
191 |
tataaacacaagagaaacaaatttgaaacaagagaaacaaatttgagaattataaatatgtttcatggaagtattactttgttttgttgaatgctttatt |
290 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |
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| T |
15978271 |
tataaaca--agagaa-caaatttgaaacaagagaaacaaatttgagaattataaatatgtttcattgaagtattaaatggttttgttgaatgctttatt |
15978367 |
T |
|
| Q |
291 |
aagtttcttacattcaggatgtgtaattttttaaatatatttcatggaagtat |
343 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
15978368 |
aagtttcttgcattcaggatgtgtaatattttaaatatattgcatggaagtat |
15978420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 19123661 - 19123994
Alignment:
| Q |
16 |
gatgattcaatatatggtaacataaacggcttgatttattctagagatattgcaatctctttctttgtgttaaa------------gaatgagatgtcta |
103 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||||| |||||||| |
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| T |
19123661 |
gatgattcaatatatcgtaacataaacgtcttgatttattctagagatattgctatcactttctttgtgttaaatggacgtttaaagaatgtgatgtcta |
19123760 |
T |
|
| Q |
104 |
aaatttgatgcctttgtcaattatgcaacaagataaaagcttgtgtgaatttc-cctactttaaattcatttacaaatctgaaaatcatataaacacaag |
202 |
Q |
| |
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|| ||||||| ||| ||||| ||||||||||||||||| |||||| | |||| |||||||||||| ||| | ||| ||| |||| || |
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| T |
19123761 |
gaaattgatgcatttctcaatcatgcaacaagataaaagattgtgtaattttctcctactttaaat--attgtctaataacaaattcattta-------- |
19123850 |
T |
|
| Q |
203 |
agaaacaaatttgaaacaagagaaacaaatttgagaattataaatatgtttcatggaagtattactttgttttgttgaatgctttattaagtttcttaca |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||| ||||||| || |
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|
| T |
19123851 |
-----caaatttgaaacaagagaaacaaatttgagaattataaatatgattcattgaagtattaaatggttttgttgaatgctttattatgtttcttgca |
19123945 |
T |
|
| Q |
303 |
ttcaggatgtgtaattttttaaatatatttcatggaagtattaaatgat |
351 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
19123946 |
ttcaggatgtgtaatattttaaatatatttcatggaagtatcaaatgat |
19123994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 219 - 351
Target Start/End: Complemental strand, 12052871 - 12052739
Alignment:
| Q |
219 |
caagagaaacaaatttgagaattataaatatgtttcatggaagtattactttgttttgttgaatgctttattaagtttcttacattcaggatgtgtaatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12052871 |
caagagaaacaaatttgagaattataaatatgtttcatggaagtattaaattgttttgttgaatgctttattaagtttcttgcattcaggatgtgtaata |
12052772 |
T |
|
| Q |
319 |
ttttaaatatatttcatggaagtattaaatgat |
351 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
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|
| T |
12052771 |
ttttaaatatatttcttggaagtattaaatgat |
12052739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 207 - 343
Target Start/End: Original strand, 19109836 - 19109972
Alignment:
| Q |
207 |
acaaatttgaaacaagagaaacaaatttgagaattataaatatgtttcatggaagtattactttgttttgttgaatgctttattaagtttcttacattca |
306 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| |||||| |
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| T |
19109836 |
acaaatttgaaacaagacaaacaaatttgagaattataaatatgtttcattgaagtattaagtggttttgttgaatgctttattaagtttcttgcattca |
19109935 |
T |
|
| Q |
307 |
ggatgtgtaattttttaaatatatttcatggaagtat |
343 |
Q |
| |
|
||||||||||| |||||||| ||||||||| |||||| |
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|
| T |
19109936 |
ggatgtgtaatattttaaatgtatttcatgaaagtat |
19109972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 12059720 - 12059587
Alignment:
| Q |
218 |
acaagagaaacaaatttgagaattataaatatgtttcatggaagtattactttgttttgttgaatgctttattaagtttcttacattcaggatgtgtaat |
317 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||||||||| || |
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|
| T |
12059720 |
acaatagaatcaaatttgagaattataaatatgtttcatggaagtattatatggttttgttgaatggtttattaagtttcttgcattcaggatgtgtgat |
12059621 |
T |
|
| Q |
318 |
tttttaaatatatttcatggaagtattaaatgat |
351 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| |
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|
| T |
12059620 |
attttaaatatatttaatggaagtatcaaatgat |
12059587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 233 - 351
Target Start/End: Original strand, 19144869 - 19144987
Alignment:
| Q |
233 |
ttgagaattataaatatgtttcatggaagtattactttgttttgttgaatgctttattaagtttcttacattcaggatgtgtaattttttaaatatattt |
332 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||| | ||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
19144869 |
ttgagaattataaatacgattcattgaagtattaaatggttttgttgaatgctttattatgtttcttgcattcaggatgtgtaatattttaaatatattt |
19144968 |
T |
|
| Q |
333 |
catggaagtattaaatgat |
351 |
Q |
| |
|
||||||||||| ||||||| |
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|
| T |
19144969 |
catggaagtatcaaatgat |
19144987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 19144681 - 19144830
Alignment:
| Q |
16 |
gatgattcaatatatggtaacataaacggcttgatttattctagagatattgcaatctctttctttgtg------------ttaaagaatgagatgtcta |
103 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||| |||| |
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|
| T |
19144681 |
gatgattcaatatatcgtaacataaacgtcttgatttattcttgagatattgctatctctttctttgtgttaaatggacgtttaaagaatgtgatatcta |
19144780 |
T |
|
| Q |
104 |
aaatttgatgcctttgtcaattatgcaacaagataaaagcttgtgtgaat |
153 |
Q |
| |
|
|| ||||||| |||||| || ||||||||||||||||| |||||||||| |
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|
| T |
19144781 |
gaaattgatgcatttgtccatcatgcaacaagataaaagattgtgtgaat |
19144830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 12052996 - 12052932
Alignment:
| Q |
23 |
caatatatggtaacataaacggcttgatttattctagagatattgcaatctctttctttgtgtta |
87 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12052996 |
caatatatcataacataaacggcttgatttattctagagatattgcaatctctttctttgtgtta |
12052932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 19109693 - 19109764
Alignment:
| Q |
18 |
tgattcaatatatggtaacataaacggcttgatttattctagagatattgcaatctctttctttgtgttaaa |
89 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
19109693 |
tgattcaatatatcgtaacataaacggcttgaattattcttgagatattgaaatctctttctttgtgttaaa |
19109764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 12041663 - 12041590
Alignment:
| Q |
85 |
ttaaagaatgagatgtctaaaatttgatgcctttgtcaattatgcaacaagataaaagcttgtgtgaatttccc |
158 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||| |||| ||| |||||||||||||| ||||||||| |
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|
| T |
12041663 |
ttaaagaatgagatgtctagaatttgatgcatttgtcaatcatgccacatgataaaagcttgtgcgaatttccc |
12041590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 12059990 - 12059838
Alignment:
| Q |
16 |
gatgattcaatatatggtaacataaacggcttgatttattctagagatattgcaatctctttctttgtg----------ttaaagaatgagatgtctaaa |
105 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| | |||||||| |||||| ||| ||||| ||||||||||||||||| | | |
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|
| T |
12059990 |
gatgattcaatatatcataacataaacaacttgatttattgttgagatattacaatctttttgtttgttaaattgtggtttaaagaatgagatgtcaaga |
12059891 |
T |
|
| Q |
106 |
atttgatgcctttgtcaattatgcaacaagataaaagcttgtgtgaatttccc |
158 |
Q |
| |
|
| ||||||| ||||||||| |||| |||||||||||||||||| | ||||||| |
|
|
| T |
12059890 |
aattgatgcatttgtcaatcatgccacaagataaaagcttgtgcggatttccc |
12059838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 12041485 - 12041430
Alignment:
| Q |
296 |
tcttacattcaggatgtgtaattttttaaatatatttcatggaagtattaaatgat |
351 |
Q |
| |
|
|||| |||||||||||| |||| |||||||||||||| |||||||||| ||||||| |
|
|
| T |
12041485 |
tcttgcattcaggatgtctaatattttaaatatatttgatggaagtatcaaatgat |
12041430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 297
Target Start/End: Original strand, 12139572 - 12139631
Alignment:
| Q |
238 |
aattataaatatgtttcatggaagtattactttgttttgttgaatgctttattaagtttc |
297 |
Q |
| |
|
|||| ||||| |||||||||||||||| | | |||||||||| |||||||||||||||| |
|
|
| T |
12139572 |
aattttaaatgtgtttcatggaagtatcaaatggttttgttgactgctttattaagtttc |
12139631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 12028935 - 12028886
Alignment:
| Q |
248 |
atgtttcatggaagtattactttgttttgttgaatgctttattaagtttc |
297 |
Q |
| |
|
||||||||||||||||| | | |||||||||| |||||||||||||||| |
|
|
| T |
12028935 |
atgtttcatggaagtatcaaatggttttgttgactgctttattaagtttc |
12028886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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