View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_58 (Length: 353)

Name: NF18993_low_58
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_58
NF18993_low_58
[»] chr6 (11 HSPs)
chr6 (18-353)||(31230018-31230353)
chr6 (39-255)||(31214564-31214781)
chr6 (101-261)||(31145101-31145261)
chr6 (94-261)||(31171407-31171574)
chr6 (68-261)||(30955577-30955770)
chr6 (101-261)||(31189159-31189319)
chr6 (98-261)||(31224830-31224993)
chr6 (101-249)||(31200966-31201114)
chr6 (68-261)||(30945317-30945510)
chr6 (97-261)||(30961325-30961489)
chr6 (94-263)||(30992805-30992974)
[»] chr8 (1 HSPs)
chr8 (121-238)||(44036028-44036145)


Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 31230353 - 31230018
Alignment:
Q  18 agaatatacaacaaatatgataaataatgcagtgtggaacatttaccccaaaatttcatgaagctgatgattcttgtactgatctagtaggagaagaaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31230353 agaatatacaacaaatatgataaataatgcagtgtggaacatttaccccaaaatttcatgaagctgatgattcttgtactgatctagtaggagaagaaag 31230254  T
Q  118 aataggttttggtggtatttccaaagaattcgtgttgccttctaacatttcaatcactctactcattgttggtctatcatttggaaatgtttgaatgcac 217  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31230253 aataggttttggtggtatttccaaacaattcttgttgccttctaacatttcaatcactctactcattgttggtctatcatttggaaatgtttgaatgcac 31230154  T
Q  218 cataaacctacaatggtcaatctccttgcaatttcatcttcttccgagacaatcacttcgtccggtctcaaatcattgcgtagatcaggtttcttgtatc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||     
T  31230153 cataaacctacaatggtcaatctccttgcaatttcatcttcttccgagacaatcacttcgtccggtctcaaatcattgcgtagatcaagattcttgtata 31230054  T
Q  318 cccgctgtggctcgtatctctcacttgtttggcttg 353  Q
    |||  || ||   |||| ||||||||||||| ||||    
T  31230053 cccaatgaggaaagtatatctcacttgtttgacttg 31230018  T

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Target: chr6; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 39 - 255
Target Start/End: Complemental strand, 31214781 - 31214564
Alignment:
Q  39 aaataatgcagtgtggaacatttacccca-aaatttcatgaagctgatgattcttgtactgatctagtaggagaagaaagaataggttttggtggtattt 137  Q
    |||||||||||||||||| | ||||  || ||||||||||||||||| |||| | |||||| |||||||||||||||||||||||||||||| |||||||    
T  31214781 aaataatgcagtgtggaagacttacaacataaatttcatgaagctgacgattttggtactggtctagtaggagaagaaagaataggttttgggggtattt 31214682  T
Q  138 ccaaagaattcgtgttgccttctaacatttcaatcactctactcattgttggtctatcatttggaaatgtttgaatgcaccataaacctacaatggtcaa 237  Q
    |||| ||| ||   |||||||||||||||||||| |||||||||||||  |||||||||||||||| |||||||||||||||||| ||||| |||||||     
T  31214681 ccaatgaactcacattgccttctaacatttcaataactctactcattgcaggtctatcatttggaagtgtttgaatgcaccataatcctactatggtcat 31214582  T
Q  238 tctccttgcaatttcatc 255  Q
    |||| |||| || |||||    
T  31214581 tctctttgcgatgtcatc 31214564  T

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Target: chr6; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 101 - 261
Target Start/End: Original strand, 31145101 - 31145261
Alignment:
Q  101 ctagtaggagaagaaagaataggttttggtggtatttccaaagaattcgtgttgccttctaacatttcaatcactctactcattgttggtctatcatttg 200  Q
    ||||||||||||||||| |  ||||| ||||||||||| |  |||||| ||||  |||||||||||||||| ||| |||||||||| ||||||||| |||    
T  31145101 ctagtaggagaagaaagcaacggtttgggtggtatttcaagtgaattcatgttaacttctaacatttcaataactttactcattgtaggtctatcacttg 31145200  T
Q  201 gaaatgtttgaatgcaccataaacctacaatggtcaatctccttgcaatttcatcttcttc 261  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||||||| |||||||||||    
T  31145201 gaaatgtttgaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttc 31145261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 94 - 261
Target Start/End: Original strand, 31171407 - 31171574
Alignment:
Q  94 tactgatctagtaggagaagaaagaataggttttggtggtatttccaaagaattcgtgttgccttctaacatttcaatcactctactcattgttggtcta 193  Q
    |||||||||||| ||||| ||| | |  ||||||||||| |||||||  |||||| |  |  |||||||||||||||||||| |||||||||| ||||||    
T  31171407 tactgatctagtgggagatgaatgtaatggttttggtggcatttccagtgaattcattgtaacttctaacatttcaatcactttactcattgtaggtcta 31171506  T
Q  194 tcatttggaaatgtttgaatgcaccataaacctacaatggtcaatctccttgcaatttcatcttcttc 261  Q
    ||| |||||||||||||||||||||||||||| ||||| |||| |||||||||||| |||||||||||    
T  31171507 tcacttggaaatgtttgaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttc 31171574  T

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Target: chr6; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 30955770 - 30955577
Alignment:
Q  68 aaatttcatgaagctgatgattcttgtactgatctagtaggagaagaaagaataggttttggtggtatttccaaaga-attcgtgttgccttctaacatt 166  Q
    |||||||| |||| ||| |||||   || ||||||||||||||||||||  | |||||||||||||||||| || || |||| || | ||||| ||||||    
T  30955770 aaatttcaagaagttgaagattccaataatgatctagtaggagaagaaaccaaaggttttggtggtatttc-aaggacattcatgctaccttccaacatt 30955672  T
Q  167 tcaatcactctactcattgttggtctatcatttggaaatgtttgaatgcaccataaacctacaatggtcaatctccttgcaatttcatcttcttc 261  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| ||   ||||||| |||| ||||||    
T  30955671 tcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatggtcattccttttgcaatctcattttcttc 30955577  T

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Target: chr6; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 101 - 261
Target Start/End: Original strand, 31189159 - 31189319
Alignment:
Q  101 ctagtaggagaagaaagaataggttttggtggtatttccaaagaattcgtgttgccttctaacatttcaatcactctactcattgttggtctatcatttg 200  Q
    |||||||| |||||||||   ||||| ||||||||||| |   ||||| ||||  |||||||||||||||||||| |||||||||| ||||||||| |||    
T  31189159 ctagtaggtgaagaaagatatggtttaggtggtatttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttg 31189258  T
Q  201 gaaatgtttgaatgcaccataaacctacaatggtcaatctccttgcaatttcatcttcttc 261  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||||||| || ||||||||    
T  31189259 gaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatctcgtcttcttc 31189319  T

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Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 98 - 261
Target Start/End: Complemental strand, 31224993 - 31224830
Alignment:
Q  98 gatctagtaggagaagaaagaataggttttggtggtatttccaaagaattcgtgttgccttctaacatttcaatcactctactcattgttggtctatcat 197  Q
    |||||||| ||||||||||| |  ||||||||||| |||||||| |||||| || |  | |||||||||||||||||| |||||||||| || |||||||    
T  31224993 gatctagtcggagaagaaagcaatggttttggtggcatttccaacgaattcatgctaacatctaacatttcaatcactttactcattgtaggcctatcat 31224894  T
Q  198 ttggaaatgtttgaatgcaccataaacctacaatggtcaatctccttgcaatttcatcttcttc 261  Q
    | ||||| |||||||| ||||| |||||||||||||||| |||||||||||| | |||||||||    
T  31224893 taggaaacgtttgaatacaccacaaacctacaatggtcattctccttgcaatcttatcttcttc 31224830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 101 - 249
Target Start/End: Original strand, 31200966 - 31201114
Alignment:
Q  101 ctagtaggagaagaaagaataggttttggtggtatttccaaagaattcgtgttgccttctaacatttcaatcactctactcattgttggtctatcatttg 200  Q
    |||||||| |||||||||   ||||| ||||||||||| |   ||||| ||||  |||||||||||||||||||| |||||||||| ||||||||| |||    
T  31200966 ctagtaggtgaagaaagatatggtttaggtggtatttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttg 31201065  T
Q  201 gaaatgtttgaatgcaccataaacctacaatggtcaatctccttgcaat 249  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  31201066 gaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaat 31201114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 30945510 - 30945317
Alignment:
Q  68 aaatttcatgaagctgatgattcttgtactgatctagtaggagaagaaagaataggttttggtggtatttccaaaga-attcgtgttgccttctaacatt 166  Q
    |||||||| |||| ||| |||||   || |||||| |||||||||||||  | |||||||||||||||||| || || |||| || | ||||| ||||||    
T  30945510 aaatttcaagaagttgaagattccaataatgatcttgtaggagaagaaaccaaaggttttggtggtatttc-aaggatattcatgctaccttccaacatt 30945412  T
Q  167 tcaatcactctactcattgttggtctatcatttggaaatgtttgaatgcaccataaacctacaatggtcaatctccttgcaatttcatcttcttc 261  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||| ||   ||||||| |||| ||||||    
T  30945411 tcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatagtcattccttttgcaatctcattttcttc 30945317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 97 - 261
Target Start/End: Complemental strand, 30961489 - 30961325
Alignment:
Q  97 tgatctagtaggagaagaaagaataggttttggtggtatttccaaagaattcgtgttgccttctaacatttcaatcactctactcattgttggtctatca 196  Q
    ||||||||||||||| ||||| |  |||||||||||||||||||| |||||| ||||  |||||||||||||||  ||| |||||||||| || ||  ||    
T  30961489 tgatctagtaggagacgaaagcaatggttttggtggtatttccaatgaattcatgttaacttctaacatttcaactactttactcattgtaggcctgcca 30961390  T
Q  197 tttggaaatgtttgaatgcaccataaacctacaatggtcaatctccttgcaatttcatcttcttc 261  Q
    || |||||||||||||| ||||| ||||| |||||||||| |||| ||||||| |||| ||||||    
T  30961389 ttaggaaatgtttgaatacaccacaaacccacaatggtcattctctttgcaatctcattttcttc 30961325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 94 - 263
Target Start/End: Complemental strand, 30992974 - 30992805
Alignment:
Q  94 tactgatctagtaggagaagaaagaataggttttggtggtatttccaaagaattcgtgttgccttctaacatttcaatcactctactcattgttggtcta 193  Q
    |||||||||||||||||| ||||| |  |||||||||||||||||||| |||||  |||   |||||||||||||||  ||| |||||||||| |||||     
T  30992974 tactgatctagtaggagacgaaagcaatggttttggtggtatttccaacgaattaatgtcaacttctaacatttcaactactttactcattgtaggtctg 30992875  T
Q  194 tcatttggaaatgtttgaatgcaccataaacctacaatggtcaatctccttgcaatttcatcttcttccg 263  Q
     |||| |||||||||||||| ||||| ||||  ||||||||||  ||| ||||||| |||||||||||||    
T  30992874 ccattaggaaatgtttgaatacaccacaaactcacaatggtcatcctctttgcaatctcatcttcttccg 30992805  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 121 - 238
Target Start/End: Complemental strand, 44036145 - 44036028
Alignment:
Q  121 aggttttggtggtatttccaaagaattcgtgttgccttctaacatttcaatcactctactcattgttggtctatcatttggaaatgtttgaatgcaccat 220  Q
    |||||||||||| ||||||||||||| | || | || || ||||| ||||||||| |||| ||||| ||||||| | | |||| |||||||||||||||     
T  44036145 aggttttggtggcatttccaaagaatccatgctaccatccaacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccac 44036046  T
Q  221 aaacctacaatggtcaat 238  Q
    ||||| || || ||||||    
T  44036045 aaaccaaccatagtcaat 44036028  T

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