View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_65 (Length: 336)
Name: NF18993_low_65
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_65 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 320
Target Start/End: Original strand, 1845134 - 1845448
Alignment:
| Q |
7 |
tccaagaatatacaaagttaaatagaaagattgtaataagacccacatcagcagatttataatgcattgggaggaaaccttacctataaataggtagtgg |
106 |
Q |
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| T |
1845134 |
tccaaaaatatacaaagttgaatagaaagattgtaataagacccacatcagcagatttataatgcattgggaggaaaccttacctataaataggtagtgg |
1845233 |
T |
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| Q |
107 |
actgcacatctttcatatacaatcaaatgcagatgcaatgtttttcaattggattggataaatcaaatatttgagatagtatccctttttgaacatccaa |
206 |
Q |
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| T |
1845234 |
actgcacatctttcatattcaatcaaatgcagatgcaatgtttttaaattggattggataaatcaaatatttgagatagtatcccttttcgaacatccaa |
1845333 |
T |
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| Q |
207 |
ttgtgtttttataaacgatgtgatgttcgaga-ggggtatatctctattatttgtttttattcctgtttgctctctattatgggacacaataaaattatc |
305 |
Q |
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| T |
1845334 |
ttgtgtttttataaacgatgcgatgttcgagagggggtatatttctattatttgtttttattcctgtttggtctctattatgggacacaataaaattatc |
1845433 |
T |
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| Q |
306 |
aaaattttaggccct |
320 |
Q |
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| T |
1845434 |
aaaattttaggccct |
1845448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 1847355 - 1847472
Alignment:
| Q |
7 |
tccaagaatatacaaagttaaatagaaagattgtaataagacccacatcagcagatttataatgcattgggaggaaaccttacctataaataggtagtgg |
106 |
Q |
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| T |
1847355 |
tccaaaaatatacaaagttgaatagaaagattgtaataagacccacaacggcagctt-ataatgcattgggaggaaacctttcatataaataggtaatgg |
1847453 |
T |
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| Q |
107 |
actgcacatctttcatata |
125 |
Q |
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| T |
1847454 |
acttcacatctttcatata |
1847472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 1819730 - 1819925
Alignment:
| Q |
7 |
tccaagaatatacaaagttaaatagaaagattgtaataagacccacatcagcagatttataatgcattgg-gaggaaaccttacctataaataggtagtg |
105 |
Q |
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| T |
1819730 |
tccaaaaatataccaagttgaataaaaagattgtaatatgacccacatcggcagctt-atatagcatttgagaggaaaccttagctataaataggtaggg |
1819828 |
T |
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| Q |
106 |
gactgcacatctttcatatacaatcaaatgcagatgcaatgtttttcaattggattggataaatcaaatatttgagatagtatccctttttgaacat |
202 |
Q |
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| T |
1819829 |
gattgaacacaattcaaatactatcaaatgcaaattcaacgtttttaaatttgattggataaaacaaatatttgaggtgatatacctttttgaacat |
1819925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 1848177 - 1848316
Alignment:
| Q |
21 |
aagttaaatagaaagattgtaataagacccacatcagcagatttataatgcattgggaggaaaccttacctataaataggtagtggactgcacatctttc |
120 |
Q |
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||||| |||||| |||| |||||||| ||||||| || | |||||| |||||| ||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
1848177 |
aagttgaatagagagatagtaataagtcccacattggc-gtcttataaagcattgagaggaaaccttacttataaataggtggtggactgcacatctttc |
1848275 |
T |
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| Q |
121 |
atatacaatcaaatgcagatgc-aatgtttttcaattggat |
160 |
Q |
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| T |
1848276 |
aaatacaattaaatgcagatacaaatgcttttaaattggat |
1848316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 1842827 - 1842920
Alignment:
| Q |
21 |
aagttaaatagaaagattgtaataagacccacatcagcagatttataatgcattgggaggaaaccttacctataaataggtagtggactgcacat |
115 |
Q |
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| T |
1842827 |
aagttgaatagagagatagtaataagtcccacatcggcagctt-ataaagcattgggaggaaaccttagctataaataggcagtggattgcacat |
1842920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 1848412 - 1848479
Alignment:
| Q |
253 |
ttatttgtttttattcctgtttgctctctattatgggacacaataaaattatcaaaattttaggccct |
320 |
Q |
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| T |
1848412 |
ttatttgtctttgttcgtgtttggtctctattatgggacacaataaaactattaaattttgaggccct |
1848479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 1836407 - 1836495
Alignment:
| Q |
63 |
ttataatgcattgggaggaaaccttacctataaataggtagtggactgcacatctttcatatacaatcaaatgcagatgcaatgtttttc |
152 |
Q |
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| T |
1836407 |
ttataaagcatttagaggacaccttagttataaataagtagtggactgt-catatttcaaatacaatcaaatgcaaatgcaatatttttc |
1836495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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