View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_67 (Length: 330)
Name: NF18993_low_67
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 313
Target Start/End: Complemental strand, 41901455 - 41901152
Alignment:
| Q |
10 |
gcagagattatacccaacaagataatttatgtaaagcatctaggtacgtagcccattcattcttgtgccttgacttaaaaatgttgccatatgtagccaa |
109 |
Q |
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| T |
41901455 |
gcagagattatacccaacaagataatttatgtaaagcatctaggtacgtagcccattcattcttgtgccttgacttaaaaatgttgccatatgtagccaa |
41901356 |
T |
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| Q |
110 |
acaaattgcttagagtcgattccaatggtgcacatttcttaacatgattccgctagaaaaaatgaatgatcacctgcttacacataaatggtcccgcatc |
209 |
Q |
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| T |
41901355 |
acaaattgcttagagtcgattccaatggtgcacatttcttaacatgattccgctagaaaaaatgaatgatcacctgcttacacataaatggtcccgcatc |
41901256 |
T |
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| Q |
210 |
tacatgaataattactctttctgtccttaacgttagagcttgtctagtacgtagaaaccctaatgtacgtaaatttaaaaaggtcatgattggagagaag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41901255 |
tacatgaataattactctttctgtccttaacgttagagcttgtctagtacgtagaaaccctaatgtacgtaaatttaaaaaggtcatgattggagagaag |
41901156 |
T |
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| Q |
310 |
ctat |
313 |
Q |
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|||| |
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| T |
41901155 |
ctat |
41901152 |
T |
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