View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_7 (Length: 577)
Name: NF18993_low_7
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 30 - 559
Target Start/End: Complemental strand, 7195487 - 7194969
Alignment:
| Q |
30 |
tcacctgttaccaagaagacgatgaagtcttatgatcatgtcttcttcgtcggtagagatatcgcctctctttatacctggtttgagataattcaaccat |
129 |
Q |
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| T |
7195487 |
tcacctgttaccaagaagacgatgaagtcttatgatcatgtcttcttcgtcggtagagatatggcctctctttatacctggtttgagataattcaaccat |
7195388 |
T |
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| Q |
130 |
ctttgtctacaactttttccacaccgctttaaacctacaccatataaaccaaagagaccaatcgaaaactatttaagaaaaattataatagacaacatga |
229 |
Q |
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| T |
7195387 |
ctttgtctacaactttttccacaccgctttaaacctactccatataaaccaaagagaccaatcgaaaactatttaagaaaaattataatagacaacatga |
7195288 |
T |
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| Q |
230 |
tcttctgccacggccaaatcggattcaaaatctaaggacatgcatggaacaatcttgtatcctctacggtctctctagacaaacctctcggccattcaaa |
329 |
Q |
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| T |
7195287 |
tcttctgccacggccaaatcggattcaaaatctaaggacatgcatggaacaatcttgtatcctctacagtctctctagacaaacctctcggccattcaaa |
7195188 |
T |
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| Q |
330 |
taaatccaactatcaagatttgtttagatttgtttggagagacagcaaaggatacaagtctcatgaaaacacattgaatggcaacctataatatagttgt |
429 |
Q |
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| T |
7195187 |
ttaatccaactatcaagattt----------gtttggagagacaggaaaggatacaagtctcatgaaaacacattgaatggcaa-ctataatatagttgt |
7195099 |
T |
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| Q |
430 |
gcattagagaaaatcagtaattaatttagcacctgcattttgggcaaccttttgccattttccttctccatgaatgacaacatatttggagaggatatca |
529 |
Q |
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| T |
7195098 |
gcattagagaaaatcagtaattaatttagcacctgcattttgggcaaccttttgccattttccttctccatgaatgacaacatatttggagaggatatca |
7194999 |
T |
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| Q |
530 |
tcttcttcacgagaccaagcacctttatta |
559 |
Q |
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| T |
7194998 |
tcttcttcacgagaccaagcacctttatta |
7194969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 9622004 - 9621946
Alignment:
| Q |
94 |
cctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca |
152 |
Q |
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| T |
9622004 |
cctctctttatatctggtctaagataattcatccatctaagtctacaacttttcccaca |
9621946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 52071733 - 52071792
Alignment:
| Q |
93 |
gcctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca |
152 |
Q |
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| T |
52071733 |
gcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccaca |
52071792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 48892615 - 48892673
Alignment:
| Q |
94 |
cctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca |
152 |
Q |
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|||||||||||| ||||| | ||||| |||| ||||||| |||| |||||||||||||| |
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| T |
48892615 |
cctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccaca |
48892673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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