View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_75 (Length: 309)

Name: NF18993_low_75
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_75
NF18993_low_75
[»] chr6 (4 HSPs)
chr6 (101-297)||(8911877-8912077)
chr6 (2-292)||(8918874-8919152)
chr6 (2-173)||(8865542-8865703)
chr6 (2-173)||(8871231-8871392)
[»] chr5 (1 HSPs)
chr5 (2-128)||(24543112-24543238)
[»] chr3 (3 HSPs)
chr3 (31-138)||(7771262-7771369)
chr3 (1-46)||(21304507-21304552)
chr3 (2-62)||(55036175-55036235)
[»] chr1 (5 HSPs)
chr1 (81-206)||(15813838-15813963)
chr1 (70-151)||(16054846-16054927)
chr1 (32-173)||(16357301-16357442)
chr1 (81-173)||(16084469-16084561)
chr1 (6-62)||(36757164-36757220)
[»] chr4 (1 HSPs)
chr4 (2-55)||(22049984-22050037)
[»] chr7 (1 HSPs)
chr7 (4-56)||(23392604-23392656)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 101 - 297
Target Start/End: Original strand, 8911877 - 8912077
Alignment:
Q  101 attttgtcattttcttctttatgttagatataata---ttttatattcctttaacaacattccattattgttattttccat-gacagtgcatattctttg 196  Q
    |||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||    
T  8911877 attttgtcattttcttctttatgttagatataatactattttttattcctttaacaacattcctttattgttattttcctttgacagtgcatattctttg 8911976  T
Q  197 caaacatgaccggaattgtccaaaaaatatgtgtctccttactcaaattccgaagtgctttaaaaatgtttgtaaatgtgtttaattgtaaccattttat 296  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8911977 caaacatgaccggaactgtccaaaaaatatgtgtctccttactcaaattccaaagtgctttaaaaatgtttgtaaatgtgtttaattgtaaccattttat 8912076  T
Q  297 t 297  Q
    |    
T  8912077 t 8912077  T

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Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 2 - 292
Target Start/End: Original strand, 8918874 - 8919152
Alignment:
Q  2 gaaaaatatggctcaaattctcaattttatttatactttgataatgtttctttctttgtttctcatgttaaccaatggaagtaagtaacttttgacatta 101  Q
    ||||||||||||||| ||| |||| | | ||||| ||||| || ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||     
T  8918874 gaaaaatatggctcacattttcaactatgtttatgctttgctagtgtttctttctctatttctcatggtaaccaatggaagtaagtaacttttgacattg 8918973  T
Q  102 ttttgtcattttcttctttatgttagatataatattttatattcctttaacaacattccattattgttattttccatgacagtgcatattctttgcaaac 201  Q
    || | |||||||||||||||||            |  |||||||||||||||| ||| | ||||||||||||  | ||||||| ||||||  |||| |      
T  8918974 ttctctcattttcttctttatg------------tactatattcctttaacaaaatttctttattgttatttgacttgacagtacatattggttgcgata 8919061  T
Q  202 atgaccggaattgtccaaaaaatatgtgtctccttactcaaattccgaagtgctttaaaaatgtttgtaaatgtgtttaattgtaaccatt 292  Q
    | |||||| | ||||||||| | ||||||| ||||| ||||| ||| |||||||| |||||| ||||||||||||||||| | ||||||||    
T  8919062 aggaccgggactgtccaaaacaaatgtgtcaccttaatcaaactccaaagtgcttgaaaaatatttgtaaatgtgtttaactataaccatt 8919152  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 8865703 - 8865542
Alignment:
Q  2 gaaaaatatggctcaaattctcaattttatttatactttgataatgtttctttctttgtttctcatgttaaccaatggaagtaagtaacttttgacatta 101  Q
    ||||||||||||| ||||| |||| | | ||||| |||||||||||||||||||| | |||||||||  ||||| ||||||||||||||| |||| |||     
T  8865703 gaaaaatatggctaaaattttcaactatgtttatgctttgataatgtttctttctctatttctcatgggaaccagtggaagtaagtaactcttgaaattc 8865604  T
Q  102 ttttgtcattttcttctttatgttagatataatattttatattcctttaacaacattccattattgttattt 173  Q
    |||| |||||   |||| ||||||||| | |       ||||||||||||||||||||| ||||||||||||    
T  8865603 ttttctcatt---ttctgtatgttagacaca-------atattcctttaacaacattcctttattgttattt 8865542  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 8871392 - 8871231
Alignment:
Q  2 gaaaaatatggctcaaattctcaattttatttatactttgataatgtttctttctttgtttctcatgttaaccaatggaagtaagtaacttttgacatta 101  Q
    ||||||||||||| ||||| |||| | | ||||| |||||||||||||||||||| | |||||||||  ||||| ||||||||||||||| |||| |||     
T  8871392 gaaaaatatggctaaaattttcaactatgtttatgctttgataatgtttctttctctatttctcatgggaaccagtggaagtaagtaactcttgaaattc 8871293  T
Q  102 ttttgtcattttcttctttatgttagatataatattttatattcctttaacaacattccattattgttattt 173  Q
    |||| |||||   |||| ||||||||| | |       ||||||||||||||||||||| ||||||||||||    
T  8871292 ttttctcatt---ttctgtatgttagacaca-------atattcctttaacaacattcctttattgttattt 8871231  T

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Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 24543112 - 24543238
Alignment:
Q  2 gaaaaatatggctcaaattctcaattttatttatactttgataatgtttctttctttgtttctcatgttaaccaatggaagtaagtaacttttgacatta 101  Q
    ||||||||||||||||||||  || ||| |||||||||||||||||||||||||| | ||| ||||| |||||||||| ||||||||| | |||| || |    
T  24543112 gaaaaatatggctcaaattcaaaaatttgtttatactttgataatgtttctttctctttttgtcatggtaaccaatggcagtaagtaattcttgaaataa 24543211  T
Q  102 ttttgtcattttcttctttatgttaga 128  Q
    |||| ||||||||||| ||||||||||    
T  24543212 ttttatcattttcttccttatgttaga 24543238  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 7771262 - 7771369
Alignment:
Q  31 tttatactttgataatgtttctttctttgtttctcatgttaaccaatggaagtaagtaacttttgacattattttgtcattttcttctttatgttagata 130  Q
    ||||| |||||||||| ||||||||  | | |||| || ||||| |||| |||||||||||||| |||||| ||| | |||||||| ||||| ||||| |    
T  7771262 tttattctttgataatctttctttcaatatatctcgtggtaaccgatggcagtaagtaactttttacattactttcttattttcttatttatattagaca 7771361  T
Q  131 taatattt 138  Q
    ||||||||    
T  7771362 taatattt 7771369  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21304552 - 21304507
Alignment:
Q  1 cgaaaaatatggctcaaattctcaattttatttatactttgataat 46  Q
    |||||||||||||||||||||| || ||||||||| |||| |||||    
T  21304552 cgaaaaatatggctcaaattcttaaatttatttatgcttttataat 21304507  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 55036175 - 55036235
Alignment:
Q  2 gaaaaatatggctcaaattctcaattttatttatactttgataatgtttctttctttgttt 62  Q
    ||||||||||||||||||| | || |||||||||  ||||||||| | | |||||||||||    
T  55036175 gaaaaatatggctcaaattttaaaatttatttatgttttgataatctctatttctttgttt 55036235  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 15813963 - 15813838
Alignment:
Q  81 agtaagtaacttttgacattattttgtcattttcttctttatgttagatataatattttatattcctttaacaacattccattattgttattttccatga 180  Q
    ||||||||| ||||||||||||||| |||||||||| ||||| ||| | ||||||||| ||| || ||||| || | | | ||||||||||||  |||      
T  15813963 agtaagtaatttttgacattattttctcattttcttatttatattacacataatatttcatactcttttaataaaaatactttattgttatttgacattg 15813864  T
Q  181 cagtgcatattctttgcaaacatgac 206  Q
    |||| | ||||| ||||||| |||||    
T  15813863 cagtacgtattcattgcaaagatgac 15813838  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 16054927 - 16054846
Alignment:
Q  70 taaccaatggaagtaagtaacttttgacattattttgtcattttcttctttatgttagatataatattttatattcctttaa 151  Q
    ||||||||||  |||||||| ||| ||||||||||| |||||||||| ||||| ||||| | ||||||| ||| || |||||    
T  16054927 taaccaatggcggtaagtaattttcgacattattttctcattttcttatttatattagacacaatatttcatactcttttaa 16054846  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 16357442 - 16357301
Alignment:
Q  32 ttatactttgataatgtttctttctttgtttctcatgttaaccaatggaagtaagtaacttttgacattattttgtcattttcttctttatgttagatat 131  Q
    |||| |||||||||| ||||||| | | | |||| || ||||| ||||  |||||| | ||||| |||||||||  ||||||||| ||||| ||| | ||    
T  16357442 ttatgctttgataatctttctttgtatatatctcgtggtaaccgatggcggtaagtcatttttgtcattattttcccattttcttatttatattatacat 16357343  T
Q  132 aatattttatattcctttaacaacattccattattgttattt 173  Q
    ||||||| ||| || ||||| || | | ||||||||||||||    
T  16357342 aatatttcatactcttttaataaaaatacattattgttattt 16357301  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 16084561 - 16084469
Alignment:
Q  81 agtaagtaacttttgacattattttgtcattttcttctttatgttagatataatattttatattcctttaacaacattccattattgttattt 173  Q
    ||||||||| ||||||| ||||||| |||||||||| ||||| ||| | ||||||||| ||| || ||||| || | | | ||||||||||||    
T  16084561 agtaagtaatttttgacgttattttctcattttcttatttatattacacataatatttcatactcttttaataaaaatactttattgttattt 16084469  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 36757220 - 36757164
Alignment:
Q  6 aatatggctcaaattctcaattttatttatactttgataatgtttctttctttgttt 62  Q
    ||||||||| ||||||  || |||| ||||||||||||||| ||| |||||||||||    
T  36757220 aatatggctgaaattcctaaatttagttatactttgataatctttatttctttgttt 36757164  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 22050037 - 22049984
Alignment:
Q  2 gaaaaatatggctcaaattctcaattttatttatactttgataatgtttctttc 55  Q
    |||||||||||||||||||||||  |||||||||  |||||| || ||||||||    
T  22050037 gaaaaatatggctcaaattctcatgtttatttatgatttgatcatctttctttc 22049984  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 23392604 - 23392656
Alignment:
Q  4 aaaatatggctcaaattctcaattttatttatactttgataatgtttctttct 56  Q
    |||||||| ||||||||||||| |||||||| ||||| || || |||||||||    
T  23392604 aaaatatgactcaaattctcaagtttatttacactttaatcatctttctttct 23392656  T

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