View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_76 (Length: 309)
Name: NF18993_low_76
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 26954078 - 26954181
Alignment:
| Q |
192 |
ttgcaatctgcgaaagcaaagatatatacatccaacacatcattaacgtcgatactattaccaacacacaaacactgctaataattttaaaaaacataag |
291 |
Q |
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| T |
26954078 |
ttgcaatctgcgaaagcaaagatatatacatccgacacatcattaacgtcgatactattaccaacacacaaacactgctaataattttaaaaaacataag |
26954177 |
T |
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| Q |
292 |
tagt |
295 |
Q |
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|||| |
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| T |
26954178 |
tagt |
26954181 |
T |
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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 26953904 - 26953998
Alignment:
| Q |
21 |
aacgttaaggtcatgtaatcacaaacaaccgtggcaggacctgctcgtgagagatggaaattataggaagtattattc---agcagaatttgatg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
26953904 |
aacgttaaggtcatgtaatcacaaacaaccgtggcaggacctgctcgtgagagatggaaattatatgaagtattattattaagcagaatttgatg |
26953998 |
T |
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