View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18993_low_77 (Length: 305)
Name: NF18993_low_77
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18993_low_77 |
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| [»] scaffold0208 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 9066626 - 9066858
Alignment:
| Q |
10 |
aagaatatgaccggcgaagaccaaaccaacatcgatcaagatgctatggcagtaataaaaaaccgagattcctctcaacctcgtcattattcatctaccc |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
9066626 |
aagaagatgaccggcgaagaccaaaccaacatcgatcaacatgctatgacagtcataaaataccgagattcctctcaacctcgtcattattcatctgtcc |
9066725 |
T |
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| Q |
110 |
tcttcccaagaatacggcaaaggaaactgtcaaaaatccgagcatcggtggcggagggatcatgatatcacatcaggttgtgtctttctaattttgttat |
209 |
Q |
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||| |||||||||||| |||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9066726 |
tctacccaagaatacgacaaaggcagctgtcaaaactccgagcatcggtggcggagggatcatgatatcacatcaggttctgtctttctaattttgttat |
9066825 |
T |
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| Q |
210 |
cagttaatccctatccttttatctaaaagagat |
242 |
Q |
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| T |
9066826 |
cggttaatccctatccttatatctaaaagagat |
9066858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 6198917 - 6199144
Alignment:
| Q |
10 |
aagaatatgaccggcgaagaccaaaccaacatcgatcaagatgctatggcagtaataaaaaaccgagattcctctcaacctcgtcattattcatctaccc |
109 |
Q |
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||||| |||||||| |||||||||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
6198917 |
aagaagatgaccggtgaagaccaaaccaacatcgatcgagatgctatgacagtcataaaaaaccgagatttctctcaacctcgtcattattcatctgtcc |
6199016 |
T |
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| Q |
110 |
tcttcccaagaatacggcaaaggaaactgtcaaaaatccgagcatcggtggcggagggatcatgatatcacatcaggttgtgtctttctaattttgttat |
209 |
Q |
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|||||||||||||||| |||||| | || |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6199017 |
tcttcccaagaatacgacaaaggcagctatcaaaacttcgagcatcggtggcggagggatcatgatatcacatcaggttgtgtctttctaaatttgttat |
6199116 |
T |
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| Q |
210 |
cagttaatccctatccttttatctaaaa |
237 |
Q |
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| T |
6199117 |
cggttaatccctatccttatatctaaaa |
6199144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 17008059 - 17008282
Alignment:
| Q |
16 |
atgaccggcgaagaccaaaccaacatcgatcaagatgctatggcagtaataaaaaaccgagattcctctcaacctcgtcattattcatctaccctcttcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
17008059 |
atgaccggcgaagaccaaaccaacatcgatcaagatgctatgacagtcgtaaaaaaccgagattcctctcaacctc---attattcatctgccctcttcc |
17008155 |
T |
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| Q |
116 |
caagaatacggcaaaggaaactgtcaaaaatccgagcatcggtggcggagggatcatgatatcacatcaggttgtgtctttctaattttgttatcagtta |
215 |
Q |
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|||||||||| ||||| | ||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17008156 |
caagaatacgacaaagagagctgtcaaaacttcgagcatcggtggcagagggatcatgatatcacatcaggttgtgtctttctaactttgttatcagtta |
17008255 |
T |
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| Q |
216 |
atccctatccttttatctaaaagagat |
242 |
Q |
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|||||||||||| |||||||||||||| |
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| T |
17008256 |
atccctatccttatatctaaaagagat |
17008282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 17540891 - 17540668
Alignment:
| Q |
16 |
atgaccggcgaagaccaaaccaacatcgatcaagatgctatggcagtaataaaaaaccgagattcctctcaacctcgtcattattcatctaccctcttcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
17540891 |
atgaccggcgaagaccaaaccaacatcgatcaagatgctatgacagtcgtaaaaaaccgagattcctctcaacctc---attattcatctgccctcttcc |
17540795 |
T |
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| Q |
116 |
caagaatacggcaaaggaaactgtcaaaaatccgagcatcggtggcggagggatcatgatatcacatcaggttgtgtctttctaattttgttatcagtta |
215 |
Q |
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|||||||||| ||||| | ||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17540794 |
caagaatacgacaaagagagctgtcaaaacttcgagcatcggtggcagagggatcatgatatcacatcaggttgtgtctttctaactttgttatcagtta |
17540695 |
T |
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| Q |
216 |
atccctatccttttatctaaaagagat |
242 |
Q |
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|||||||||||| |||||||||||||| |
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| T |
17540694 |
atccctatccttatatctaaaagagat |
17540668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 1370 - 1154
Alignment:
| Q |
10 |
aagaatatgaccggcgaagaccaaaccaacatcgatcaagatgctatggcagtaataaaaaaccgagattcctctcaacctcgtcattattcatctaccc |
109 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||| ||||||| ||||| || |
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| T |
1370 |
aagaagatggccggcgaagaccaaaccaacatcgatcaagatgctatgacagtcataaaaaactgagattcctctcaacctcctcattatacatctgcc- |
1272 |
T |
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| Q |
110 |
tcttcccaagaatacggcaaaggaaactgtcaaaaatccgagcatcggtggcggagggatcatgatatcacatcaggttgtgtctttctaattttgttat |
209 |
Q |
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|||||||||||||||| | |||| | ||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
1271 |
tcttcccaagaatacgactaaggcagctgtcaaaactccaagtatcggtggcggagggattatgatatcacatcaggttgtgtctttctaactttgttat |
1172 |
T |
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| Q |
210 |
cagttaatccctatcctt |
227 |
Q |
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| T |
1171 |
cggttaatccctatcctt |
1154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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