View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_8 (Length: 577)

Name: NF18993_low_8
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_8
NF18993_low_8
[»] chr4 (9 HSPs)
chr4 (20-378)||(17224985-17225346)
chr4 (254-378)||(5373863-5373988)
chr4 (380-441)||(5357776-5357839)
chr4 (452-508)||(18444670-18444726)
chr4 (379-441)||(41457317-41457379)
chr4 (380-440)||(4732398-4732456)
chr4 (379-440)||(9354736-9354797)
chr4 (387-436)||(9409460-9409509)
chr4 (300-356)||(40225497-40225554)
[»] chr3 (11 HSPs)
chr3 (379-561)||(8737472-8737654)
chr3 (379-561)||(9089710-9089892)
chr3 (98-356)||(7051112-7051381)
chr3 (98-228)||(52099098-52099226)
chr3 (380-441)||(14132361-14132422)
chr3 (379-441)||(27718255-27718317)
chr3 (399-440)||(23378277-23378318)
chr3 (378-413)||(48895840-48895875)
chr3 (387-441)||(24699364-24699418)
chr3 (387-441)||(27304708-27304762)
chr3 (380-441)||(12144770-12144830)
[»] chr2 (10 HSPs)
chr2 (92-356)||(42735282-42735560)
chr2 (378-441)||(24543650-24543713)
chr2 (380-441)||(20515818-20515878)
chr2 (387-439)||(18929103-18929155)
chr2 (393-441)||(26650704-26650752)
chr2 (387-441)||(25520704-25520758)
chr2 (380-441)||(17636491-17636551)
chr2 (380-440)||(17162272-17162331)
chr2 (389-441)||(17402608-17402659)
chr2 (398-446)||(20489630-20489678)
[»] chr7 (9 HSPs)
chr7 (98-356)||(47762075-47762344)
chr7 (147-228)||(20290530-20290610)
chr7 (380-440)||(18084069-18084129)
chr7 (379-437)||(41131701-41131759)
chr7 (387-440)||(18151877-18151930)
chr7 (393-440)||(2545488-2545535)
chr7 (396-441)||(14987385-14987430)
chr7 (396-441)||(15416996-15417041)
chr7 (387-439)||(2546778-2546830)
[»] chr1 (12 HSPs)
chr1 (105-353)||(11398091-11398349)
chr1 (308-378)||(41956049-41956119)
chr1 (98-238)||(18136536-18136672)
chr1 (92-179)||(6904575-6904664)
chr1 (380-441)||(33102815-33102876)
chr1 (387-441)||(36571991-36572045)
chr1 (300-356)||(52935172-52935229)
chr1 (300-356)||(52942807-52942864)
chr1 (300-356)||(52946215-52946272)
chr1 (380-427)||(17615055-17615102)
chr1 (380-441)||(22608151-22608212)
chr1 (309-356)||(18136436-18136484)
[»] chr5 (12 HSPs)
chr5 (254-378)||(20319509-20319634)
chr5 (379-440)||(10235823-10235883)
chr5 (380-440)||(19924284-19924344)
chr5 (389-440)||(19927020-19927071)
chr5 (380-439)||(23355434-23355493)
chr5 (391-441)||(31533306-31533356)
chr5 (380-437)||(25667547-25667604)
chr5 (387-437)||(17167589-17167639)
chr5 (380-413)||(22847826-22847859)
chr5 (380-441)||(24411120-24411181)
chr5 (388-437)||(24878142-24878191)
chr5 (387-439)||(23379500-23379552)
[»] chr8 (14 HSPs)
chr8 (98-208)||(6142032-6142142)
chr8 (380-441)||(12669093-12669154)
chr8 (381-441)||(22713925-22713985)
chr8 (380-441)||(9217938-9217999)
chr8 (379-440)||(9286652-9286713)
chr8 (380-441)||(24681062-24681123)
chr8 (388-441)||(27123921-27123974)
chr8 (379-440)||(25094841-25094902)
chr8 (388-439)||(23355264-23355315)
chr8 (465-508)||(29292225-29292268)
chr8 (390-439)||(10600469-10600519)
chr8 (379-441)||(18672428-18672490)
chr8 (387-441)||(22450340-22450393)
chr8 (380-441)||(13109975-13110036)
[»] chr6 (8 HSPs)
chr6 (380-441)||(16142327-16142388)
chr6 (379-441)||(14767108-14767170)
chr6 (380-437)||(18713496-18713553)
chr6 (398-440)||(17948199-17948241)
chr6 (380-437)||(17352559-17352615)
chr6 (380-441)||(17296477-17296538)
chr6 (380-441)||(17524651-17524712)
chr6 (380-408)||(1469523-1469551)
[»] scaffold0337 (2 HSPs)
scaffold0337 (380-441)||(4329-4390)
scaffold0337 (380-440)||(17006-17065)
[»] scaffold0065 (1 HSPs)
scaffold0065 (387-441)||(15073-15127)
[»] scaffold0002 (1 HSPs)
scaffold0002 (380-440)||(376468-376529)
[»] scaffold0039 (1 HSPs)
scaffold0039 (379-441)||(51888-51950)
[»] scaffold0142 (1 HSPs)
scaffold0142 (380-441)||(20322-20383)
[»] scaffold0014 (1 HSPs)
scaffold0014 (380-441)||(191995-192056)
[»] scaffold0016 (1 HSPs)
scaffold0016 (387-439)||(12913-12965)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 378
Target Start/End: Original strand, 17224985 - 17225346
Alignment:
Q  20 gggacaagggagaggtagaaaagaaataacattgtgagatgaggaagcctatcctaaagctggaactgaggaaatgtgatggatcaaattgtaaccgaga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17224985 gggacaagggagaggtagaaaagaaataacattgtgagatgaggaagcctatcctaaagctggaactgaggaaatgtaatggatcaaattgtaaccgaga 17225084  T
Q  120 taattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaaccaatttgcaagtaaaataacaatacaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17225085 taattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaaccaatttgcaagtaaaataacaatagaa 17225184  T
Q  220 agaagaactcgaagaaagataagagcga--actagggaatcatagagagaagaagagtttcatcacatattttccatgc-tacttccttcgcttttctct 316  Q
    ||||||||| |||||||||  | |  ||  |  || |||||| ||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||    
T  17225185 agaagaacttgaagaaagagtacaaggaataagagagaatcagagagagaagaagagtttcatcacatatcttccatgcttacttccttggcttttctct 17225284  T
Q  317 tatttataagggtcctatttctatttcccatattgcccctggttgctctttgactcattaca 378  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17225285 tatttataagggtcctatttctatttcccatattgcccctgattgctctttgactcattaca 17225346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 254 - 378
Target Start/End: Original strand, 5373863 - 5373988
Alignment:
Q  254 gaatcatagagagaagaagagtttcatcacatattttccatgct-acttccttcgcttttctcttatttataagggtcctatttctatttcccatattgc 352  Q
    |||||| |||||||||||||||||||||||| ||||| |||||| | ||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  5373863 gaatcagagagagaagaagagtttcatcacacatttttcatgcttatttccttgacttttctcttatttataagggtcctatttctatttcccatattgc 5373962  T
Q  353 ccctggttgctctttgactcattaca 378  Q
    ||||| ||||||||||||| ||||||    
T  5373963 ccctgattgctctttgacttattaca 5373988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 5357839 - 5357776
Alignment:
Q  380 atttctagtttgat--catgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    ||||||||||||||  | ||||||||||||| |||| |||||||||||||||||||||||||||    
T  5357839 atttctagtttgatatcctgcttgtaataatcaaaatcagcccttattgtttaccaaaaacacc 5357776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 508
Target Start/End: Original strand, 18444670 - 18444726
Alignment:
Q  452 tggttgtttgatgtttaagctatttttagtggataaaccctagttttcttctcttaa 508  Q
    |||||| ||| | |||||||| ||||||||||| |||||||||||||||||| ||||    
T  18444670 tggttgcttggtttttaagctgtttttagtggaaaaaccctagttttcttcttttaa 18444726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 441
Target Start/End: Complemental strand, 41457379 - 41457317
Alignment:
Q  379 aatttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    ||||||| |||||||| | ||| ||||||  ||||||| ||||| ||||||||||||||||||    
T  41457379 aatttctggtttgatcctacttttaataaccaaaaccatcccttcttgtttaccaaaaacacc 41457317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 4732456 - 4732398
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacac 440  Q
    |||||| |||||||| || |||||||||  ||||||||||||  |||||||||||||||||    
T  4732456 atttctggtttgatcctgtttgtaataaccaaaaccagccct--ttgtttaccaaaaacac 4732398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 9354736 - 9354797
Alignment:
Q  379 aatttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacac 440  Q
    ||||||| |||||||||||  ||||||||  |||||||||| || || ||||||||||||||    
T  9354736 aatttctggtttgatcatgaatgtaataaccaaaaccagcctttcttatttaccaaaaacac 9354797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 9409460 - 9409509
Alignment:
Q  387 gtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaa 436  Q
    |||||||| | |||||||||| |||||||||||||  |||||||||||||    
T  9409460 gtttgatccttcttgtaataacaaaaaccagccctcgttgtttaccaaaa 9409509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 40225497 - 40225554
Alignment:
Q  300 ttccttcgcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 356  Q
    |||||| ||||||||| ||||||| ||||||| |||| |||||||||||| |||||||    
T  40225497 ttccttggcttttctcatatttattagggtccatattcctatttcccataatgcccct 40225554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 167; Significance: 4e-89; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 379 - 561
Target Start/End: Original strand, 8737472 - 8737654
Alignment:
Q  379 aatttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacctgcaagtagctggttgtttgatgtttaagctattttt 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||    
T  8737472 aatttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacctgcaaatagctggttgcttgatttttaagctgttttt 8737571  T
Q  479 agtggataaaccctagttttcttctcttaaccctagtgagtgtgacaaattctgttgaaattgctcgcaccttaccagaagaa 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8737572 agtggataaaccctagttttcttctcttaaccctagtgagtgtgacaaattctgttgaaattgctcgcaccttaccagaagaa 8737654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 379 - 561
Target Start/End: Original strand, 9089710 - 9089892
Alignment:
Q  379 aatttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacctgcaagtagctggttgtttgatgtttaagctattttt 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||    
T  9089710 aatttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacctgcaaatagctggttgcttgatttttaagctgttttt 9089809  T
Q  479 agtggataaaccctagttttcttctcttaaccctagtgagtgtgacaaattctgttgaaattgctcgcaccttaccagaagaa 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9089810 agtggataaaccctagttttcttctcttaaccctagtgagtgtgacaaattctgttgaaattgctcgcaccttaccagaagaa 9089892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 98 - 356
Target Start/End: Complemental strand, 7051381 - 7051112
Alignment:
Q  98 atggatcaaattgtaaccgagataattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaaccaatt 197  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||| |||||||||||||||    
T  7051381 atggatcaaattgtaacagagataattgttgctattgcattgaatatgaacaatcaattcaactcccacagtataaacaaaggacgaataacaaccaatt 7051282  T
Q  198 tgcaagtaaaataacaatacaaagaagaactcgaagaaag----------ataagagcgaactagggaatcatagagagaagaagagtttcatcacatat 287  Q
    ||||||||||||||||||| ||||||||||| ||||||||          ||||||| ||| ||| |||||  |||||||||||||||||||||||||||    
T  7051281 tgcaagtaaaataacaatagaaagaagaacttgaagaaagagtacaaggaataagagagaattagagaatccgagagagaagaagagtttcatcacatat 7051182  T
Q  288 tttccatgc-tacttccttcgcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 356  Q
    ||||||| | || |||||| |  |||||||||||||||||||||| |||| || ||||||||||| |||||    
T  7051181 tttccatccttatttcctt-ggatttctcttatttataagggtccatattcctttttcccatattacccct 7051112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 52099226 - 52099098
Alignment:
Q  98 atggatcaaattgtaaccgagataattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaaccaatt 197  Q
    |||||||||||| |||   ||| |||||||||||||||||||| | |||||||| ||| ||||||| |||||||||||||||||||||| ||||||||||    
T  52099226 atggatcaaattataatgaagacaattgttgctattgtattgatt-tgaacaatgaatccaactcctagtgtataaactaaggaggaat-acaaccaatt 52099129  T
Q  198 tgcaagtaaaataacaatacaaagaagaact 228  Q
     |||||||||||||| ||  |||||||||||    
T  52099128 agcaagtaaaataactattgaaagaagaact 52099098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 14132361 - 14132422
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    ||||||||||||||| ||||||||||||  |||||||||| || ||||||||||||||||||    
T  14132361 atttctagtttgatcctgcttgtaataaccaaaaccagcctttcttgtttaccaaaaacacc 14132422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 441
Target Start/End: Original strand, 27718255 - 27718317
Alignment:
Q  379 aatttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||||  ||||||||||||||||||||| |||| ||  |||| ||||||||||||||||||    
T  27718255 aatttctgatttgatcatgcttgtaataatcaaaatcaatcctttttgtttaccaaaaacacc 27718317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 23378318 - 23378277
Alignment:
Q  399 ttgtaataataaaaaccagcccttattgtttaccaaaaacac 440  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  23378318 ttgtaataatcaaaaccagcccgtattgtttaccaaaaacac 23378277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 413
Target Start/End: Complemental strand, 48895875 - 48895840
Alignment:
Q  378 aaatttctagtttgatcatgcttgtaataataaaaa 413  Q
    ||||||||||||||||| ||||||||||||||||||    
T  48895875 aaatttctagtttgatcctgcttgtaataataaaaa 48895840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 24699364 - 24699418
Alignment:
Q  387 gtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    ||||| || |||| |||||||||||||||| ||| |||||||||||||| |||||    
T  24699364 gtttgctcctgctcgtaataataaaaaccatcccgtattgtttaccaaacacacc 24699418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 27304708 - 27304762
Alignment:
Q  387 gtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||||| |||||| |||||| || | ||||||||||| |||||||||||||||    
T  27304708 gtttgatcctgcttgcaataatcaatatcagcccttattatttaccaaaaacacc 27304762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 12144830 - 12144770
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||| |||| ||| | ||||||||||  |||||||||| |||||||||||||||||||||    
T  12144830 atttctggtttaatcctacttgtaataaccaaaaccagcc-ttattgtttaccaaaaacacc 12144770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 7e-69; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 92 - 356
Target Start/End: Complemental strand, 42735560 - 42735282
Alignment:
Q  92 aatgtgatggatcaaattgtaaccgagataattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaa 191  Q
    ||||| |||||||||| |||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  42735560 aatgtaatggatcaaagtgtaacagagataattgtttctattgtattgaatatgaactatcaattcaactcccagtgtataaactaaggaggaataacag 42735461  T
Q  192 ccaatttgcaagtaaaataacaatacaaagaagaactcgaagaaag----------ataagagcgaactagggaatcatagagagaagaagagtttcatc 281  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||||          | ||||| ||||||| |||||| |||||||| ||||||||||||    
T  42735460 ccaatttgcaagtaaactaacaatagaaagaagaacttgaagaaagagtacaaggaacaagagagaactagagaatcagagagagaataagagtttcatc 42735361  T
Q  282 acatattttccatgc-tacttccttcgcttttctcttatttata--agggtcc-tatttctatttcccatattgcccct 356  Q
    ||||||||| ||||| || ||||||  |||||||| ||||||||  ||||||| |||| |||||||||||| |||||||    
T  42735360 acatatttttcatgcttatttccttgccttttctcatatttataagagggtccatattcctatttcccataatgcccct 42735282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 378 - 441
Target Start/End: Complemental strand, 24543713 - 24543650
Alignment:
Q  378 aaatttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||    
T  24543713 aaatttctagtttgatcatgcttgtaataatcaaaatcagcccgtattgtttaccaaaaacacc 24543650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 20515818 - 20515878
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||| |||||||| ||||||||||||| ||||| ||  ||||||||||||||||||||||    
T  20515818 atttctggtttgatcctgcttgtaataatcaaaactag-tcttattgtttaccaaaaacacc 20515878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 18929155 - 18929103
Alignment:
Q  387 gtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaaca 439  Q
    ||||| || |||| |||||||| ||||||||||| ||||||||||||||||||    
T  18929155 gtttggtcctgctcgtaataatcaaaaccagcccgtattgtttaccaaaaaca 18929103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 26650752 - 26650704
Alignment:
Q  393 tcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||||  ||||||| ||||||||||| ||||||||||||||||||||    
T  26650752 tcatgctcataataatcaaaaccagcccgtattgtttaccaaaaacacc 26650704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 25520704 - 25520758
Alignment:
Q  387 gtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||||| ||||||||||||  ||||||  ||||| ||||||||||||||||||    
T  25520704 gtttgatcctgcttgtaataaccaaaacctacccttgttgtttaccaaaaacacc 25520758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 17636551 - 17636491
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||| |||||||| ||||||||||||  ||| | ||||||| ||||||||||||||||||    
T  17636551 atttctggtttgatcctgcttgtaataaccaaatc-agcccttcttgtttaccaaaaacacc 17636491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 17162272 - 17162331
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacac 440  Q
    |||||| |||||||| ||||||||||||| |||||||   | |||||||||||||||||||    
T  17162272 atttctggtttgatcctgcttgtaataatcaaaaccaattc-tattgtttaccaaaaacac 17162331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 441
Target Start/End: Complemental strand, 17402659 - 17402608
Alignment:
Q  389 ttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||| |||||||||||| |||||| | |||| |||||||||||||||||||    
T  17402659 ttgatcctgcttgtaataagaaaaacaa-ccctcattgtttaccaaaaacacc 17402608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 446
Target Start/End: Original strand, 20489630 - 20489678
Alignment:
Q  398 cttgtaataataaaaaccagcccttattgtttaccaaaaacacctgcaa 446  Q
    ||||||||||| ||||| | ||| |||||||||||||||||||| ||||    
T  20489630 cttgtaataatcaaaactatcccgtattgtttaccaaaaacaccggcaa 20489678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 3e-68; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 98 - 356
Target Start/End: Complemental strand, 47762344 - 47762075
Alignment:
Q  98 atggatcaaattgtaaccgagataattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaaccaatt 197  Q
    ||||||||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| ||    
T  47762344 atggatcaaattgtaaaagagataattgttgctattgtatt-aatttgaacaatcaattcaactcccaatgtataaactaaggagaaataacaaccattt 47762246  T
Q  198 tgcaagtaaaataacaatacaaagaagaactcgaagaaag----------ataagagcgaactagggaatcatagagagaagaagagtttcatcacatat 287  Q
    ||||||||||||||||||| |||||| |||| ||||||||          ||||||| ||||||| |||||| |||||||||||||||||||||||||||    
T  47762245 tgcaagtaaaataacaatagaaagaaaaacttgaagaaagagtacaaggaataagagagaactagagaatcagagagagaagaagagtttcatcacatat 47762146  T
Q  288 tttccatgc-tacttccttcgcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 356  Q
    |||| || | || |||||| ||||||||| ||||||||||||||| |||| |||||| ||||| |||||||    
T  47762145 tttcaatccttatttccttggcttttctcatatttataagggtccatattcctattttccataatgcccct 47762075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 20290530 - 20290610
Alignment:
Q  147 acaatcaattcaactcccagtgtataaactaaggaggaataacaaccaatttgcaagtaaaataacaatacaaagaagaact 228  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  20290530 acaatcaatccaactcccagtgtataaactaaggaggaataacaaccaatttgcaagt-aaataacaatagaaagaagaact 20290610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 18084129 - 18084069
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacac 440  Q
    ||||||||||||||| | ||||||||||  ||||||||||||| |||||||||||||||||    
T  18084129 atttctagtttgatccttcttgtaataaccaaaaccagcccttcttgtttaccaaaaacac 18084069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 379 - 437
Target Start/End: Complemental strand, 41131759 - 41131701
Alignment:
Q  379 aatttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaa 437  Q
    |||||||| ||||||| ||||||||||||| ||||||| ||||| ||||||||||||||    
T  41131759 aatttctaatttgatcgtgcttgtaataatcaaaaccaaccctttttgtttaccaaaaa 41131701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 440
Target Start/End: Original strand, 18151877 - 18151930
Alignment:
Q  387 gtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacac 440  Q
    ||||| |||||||||||||||| |||| |||||| |||||||||||||||||||    
T  18151877 gtttggtcatgcttgtaataatcaaaatcagcccgtattgtttaccaaaaacac 18151930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 440
Target Start/End: Complemental strand, 2545535 - 2545488
Alignment:
Q  393 tcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacac 440  Q
    ||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  2545535 tcatgctcgtaataatcaaaaccagcccgtattgtttaccaaaaacac 2545488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 14987385 - 14987430
Alignment:
Q  396 tgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||| |||||||| ||||||| ||| ||||||||||||||||||||    
T  14987385 tgctcgtaataatcaaaaccaacccgtattgtttaccaaaaacacc 14987430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 15416996 - 15417041
Alignment:
Q  396 tgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||| |||||||| ||||||| ||| ||||||||||||||||||||    
T  15416996 tgctcgtaataatcaaaaccaacccgtattgtttaccaaaaacacc 15417041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 2546830 - 2546778
Alignment:
Q  387 gtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaaca 439  Q
    ||||| || |||| |||||||| |||| |||||| ||||||||||||||||||    
T  2546830 gtttggtcctgctcgtaataatcaaaatcagcccatattgtttaccaaaaaca 2546778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 1e-58; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 105 - 353
Target Start/End: Original strand, 11398091 - 11398349
Alignment:
Q  105 aaattgtaaccgagataattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaaccaatttgcaagt 204  Q
    ||||||||||  |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11398091 aaattgtaacaaagataattgttgctattgtatt-aatttgaacaatcaattcaactcccagtgtataaactaaggaggaataacaaccaatttgcaagt 11398189  T
Q  205 aaaataacaatacaaagaagaactcgaagaaag----------ataagagcgaactagggaatcatagagagaagaagagtttcatcacata-ttttcca 293  Q
    |||||||||||| |||||| |||| ||||||||          ||| ||| ||||| | |||||  |||||||||||||||||||||||||| |||||||    
T  11398190 aaaataacaatagaaagaaaaacttgaagaaagagtacaaggaataggagagaactggagaatc--agagagaagaagagtttcatcacatatttttcca 11398287  T
Q  294 tgc-tacttccttcgcttttctcttatttataagggtcc-tatttctatttcccatattgcc 353  Q
    | | || |||||| ||||||||| ||||||||||||||| |||| |||||| ||||| ||||    
T  11398288 tccttatttccttggcttttctcatatttataagggtccatattcctattttccataatgcc 11398349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 308 - 378
Target Start/End: Complemental strand, 41956119 - 41956049
Alignment:
Q  308 cttttctcttatttataagggtcctatttctatttcccatattgcccctggttgctctttgactcattaca 378  Q
    |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||    
T  41956119 cttttctcttatttataagggtcctatttctatttcccatattgtccttgattgctctttgactcattaca 41956049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 18136672 - 18136536
Alignment:
Q  98 atggatcaaattgtaaccgagataattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaaccaatt 197  Q
    |||||||||||| |||   ||| |||||||||||||| ||| ||| |||||||| |||  |||||||||||| ||||||||||||||||| |||||||||    
T  18136672 atggatcaaattataatgaagacaattgttgctattgcatttaatgtgaacaatgaatcaaactcccagtgtgtaaactaaggaggaata-caaccaatt 18136574  T
Q  198 tgcaagtaaaataacaatacaaagaagaactcgaagaaaga 238  Q
     |||||||||||||   |  ||||||||||| |||||||||    
T  18136573 agcaagtaaaataa---ttgaaagaagaacttgaagaaaga 18136536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 6904664 - 6904575
Alignment:
Q  92 aatgtgatggatcaaattgtaaccgagataattgttgctattgtattgaatatga--acaatcaattcaactcccagtgtataaactaag 179  Q
    ||||| ||||||||||||||||   ||| || |||||||||||||||||||||||  ||||||||| ||| ||||||||||||| |||||    
T  6904664 aatgtaatggatcaaattgtaatgaagacaaatgttgctattgtattgaatatgatcacaatcaatccaattcccagtgtataagctaag 6904575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 33102876 - 33102815
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||| |||||||| ||||||||||||| ||||||||| | ||||||||||||||| ||||    
T  33102876 atttctggtttgatcctgcttgtaataatcaaaaccagctcgtattgtttaccaaaatcacc 33102815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 36571991 - 36572045
Alignment:
Q  387 gtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||||  |||||| |||||| |||| |||||||||||||||||||||||||||    
T  36571991 gtttgattctgcttgcaataatcaaaatcagcccttattgtttaccaaaaacacc 36572045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 52935229 - 52935172
Alignment:
Q  300 ttccttcgcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 356  Q
    |||||| ||||||||| ||||||||||||||| |||| |||||||||||| |||||||    
T  52935229 ttccttggcttttctcatatttataagggtccatattcctatttcccataatgcccct 52935172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 52942864 - 52942807
Alignment:
Q  300 ttccttcgcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 356  Q
    |||||| ||||||||| ||||||||||||||| |||| |||||||||||| |||||||    
T  52942864 ttccttggcttttctcatatttataagggtccatattcctatttcccataatgcccct 52942807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 52946272 - 52946215
Alignment:
Q  300 ttccttcgcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 356  Q
    |||||| ||||||||| ||||||||||||||| |||| |||||||||||| |||||||    
T  52946272 ttccttggcttttctcatatttataagggtccatattcctatttcccataatgcccct 52946215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 427
Target Start/End: Complemental strand, 17615102 - 17615055
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgt 427  Q
    |||||| |||||||| ||||||||||||| ||||||||||||| ||||    
T  17615102 atttctggtttgatcctgcttgtaataattaaaaccagcccttcttgt 17615055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 22608151 - 22608212
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||| ||||||||||| ||||||||||  ||||||||   |||||||||||| |||||||    
T  22608151 atttctggtttgatcatgtttgtaataatcgaaaccagcttgtattgtttaccagaaacacc 22608212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 18136484 - 18136436
Alignment:
Q  309 ttttctcttatttataagggtcc-tatttctatttcccatattgcccct 356  Q
    ||||||| ||||||||||||||| |||| |||||||||||| |||||||    
T  18136484 ttttctcatatttataagggtccatattcctatttcccataatgcccct 18136436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 254 - 378
Target Start/End: Original strand, 20319509 - 20319634
Alignment:
Q  254 gaatcatagagagaagaagagtttcatcacatattttccatgct-acttccttcgcttttctcttatttataagggtcctatttctatttcccatattgc 352  Q
    |||||| |||||||||||||||||||||||| || || |||||| | |||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  20319509 gaatcagagagagaagaagagtttcatcacacatatttcatgcttatttcctggacttttctcttatttataagggtcctatttctatttcccatattgc 20319608  T
Q  353 ccctggttgctctttgactcattaca 378  Q
    ||||| ||||||||||||| ||||||    
T  20319609 ccctgattgctctttgacttattaca 20319634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 10235883 - 10235823
Alignment:
Q  379 aatttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacac 440  Q
    ||||||| |||||||||||||||||||||| ||||| ||  |||||||||||||||||||||    
T  10235883 aatttctggtttgatcatgcttgtaataatcaaaactag-tcttattgtttaccaaaaacac 10235823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 19924284 - 19924344
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacac 440  Q
    |||| ||| |||||| |||||||||||||  |||||||||| |||||||||||||||||||    
T  19924284 atttttaggttgatcctgcttgtaataattcaaaccagcccatattgtttaccaaaaacac 19924344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 440
Target Start/End: Original strand, 19927020 - 19927071
Alignment:
Q  389 ttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacac 440  Q
    |||||| |||||||||||||  |||||||||| |||||||||||||||||||    
T  19927020 ttgatcctgcttgtaataattcaaaccagcccatattgtttaccaaaaacac 19927071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 23355493 - 23355434
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaaca 439  Q
    ||||||||||||||||| ||||||||||  ||||||| || | |||||||||||||||||    
T  23355493 atttctagtttgatcattcttgtaataaccaaaaccatccgtcattgtttaccaaaaaca 23355434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 31533306 - 31533356
Alignment:
Q  391 gatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||| ||||||||||||  ||||||||||||| ||||||||||||||||||    
T  31533306 gatcctgcttgtaataaccaaaaccagcccttcttgtttaccaaaaacacc 31533356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 380 - 437
Target Start/End: Original strand, 25667547 - 25667604
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaa 437  Q
    |||| |||||||||| ||||||||||||  ||||||||||||| |||||||| |||||    
T  25667547 atttttagtttgatcctgcttgtaataaccaaaaccagcccttcttgtttacaaaaaa 25667604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 437
Target Start/End: Original strand, 17167589 - 17167639
Alignment:
Q  387 gtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaa 437  Q
    |||| ||| ||||||||||||| |||| |||||| ||||||||||||||||    
T  17167589 gttttatcctgcttgtaataatcaaaatcagcccgtattgtttaccaaaaa 17167639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 413
Target Start/End: Complemental strand, 22847859 - 22847826
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaa 413  Q
    |||||||||||||||||||||||||||| |||||    
T  22847859 atttctagtttgatcatgcttgtaataacaaaaa 22847826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 24411181 - 24411120
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||| ||||||||  |||||||||||  |||| || ||||| ||||||||||||||||||    
T  24411181 atttctggtttgatcccgcttgtaataaccaaaatcaacccttcttgtttaccaaaaacacc 24411120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 437
Target Start/End: Complemental strand, 24878191 - 24878142
Alignment:
Q  388 tttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaa 437  Q
    ||||||| ||||||||||||| ||||||| || || ||||||||||||||    
T  24878191 tttgatcctgcttgtaataattaaaaccaacctttcttgtttaccaaaaa 24878142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 23379500 - 23379552
Alignment:
Q  387 gtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaaca 439  Q
    |||||||| |||| |||||||| ||||| ||||| || |||||||||||||||    
T  23379500 gtttgatcctgctcgtaataatcaaaactagcccgtaatgtttaccaaaaaca 23379552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 6142142 - 6142032
Alignment:
Q  98 atggatcaaattgtaaccgagataattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaaccaatt 197  Q
    |||||||||||| |||   ||| |||||||||||||| | ||||||||||| || ||| ||||||||||||||||||| ||||||||||| | |||||||    
T  6142142 atggatcaaattataataaagacaattgttgctattgcactgaatatgaacgatgaatccaactcccagtgtataaacaaaggaggaatatctaccaatt 6142043  T
Q  198 tgcaagtaaaa 208  Q
    | | |||||||    
T  6142042 tactagtaaaa 6142032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 12669093 - 12669154
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||| |||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  12669093 atttctggtttgatcctgcttgtaataatcaaaaccagcccgtattgtttaccaaaaacacc 12669154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 381 - 441
Target Start/End: Original strand, 22713925 - 22713985
Alignment:
Q  381 tttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    ||||| |||||||| ||||||||||||||||||||||||||| |||||| |||||||||||    
T  22713925 tttctggtttgatcctgcttgtaataataaaaaccagcccttcttgtttgccaaaaacacc 22713985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 9217999 - 9217938
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||| ||||||||||||| || ||||  ||||||||||||||||||||||||||||||||    
T  9217999 atttctggtttgatcatgctggttataaccaaaaccagcccttattgtttaccaaaaacacc 9217938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 9286652 - 9286713
Alignment:
Q  379 aatttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacac 440  Q
    ||||||| |||||||| |||||| |||||| |||| || |||||||||||||||||||||||    
T  9286652 aatttctggtttgatcttgcttgcaataatcaaaatcaacccttattgtttaccaaaaacac 9286713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 24681062 - 24681123
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||| |||||||  ||||||||||||| ||||||||||||| |||||| |||||||||||    
T  24681062 atttctggtttgattctgcttgtaataatcaaaaccagcccttcttgttttccaaaaacacc 24681123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 441
Target Start/End: Original strand, 27123921 - 27123974
Alignment:
Q  388 tttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    ||||||||||||||||||||  ||||||| ||||| ||||||||||||||||||    
T  27123921 tttgatcatgcttgtaataaccaaaaccatcccttcttgtttaccaaaaacacc 27123974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 25094902 - 25094841
Alignment:
Q  379 aatttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacac 440  Q
    ||||||| |||||||| |||||||||||||  |||||| ||||| |||||||| ||||||||    
T  25094902 aatttctggtttgatcctgcttgtaataatctaaaccaacccttcttgtttactaaaaacac 25094841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 439
Target Start/End: Complemental strand, 23355315 - 23355264
Alignment:
Q  388 tttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaaca 439  Q
    ||||||| ||||||||||||| |||| || ||||| ||||||||||||||||    
T  23355315 tttgatcctgcttgtaataatcaaaatcatcccttcttgtttaccaaaaaca 23355264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 508
Target Start/End: Original strand, 29292225 - 29292268
Alignment:
Q  465 tttaagctatttttagtggataaaccctagttttcttctcttaa 508  Q
    |||||||| ||||||||||| || ||||||||||||||||||||    
T  29292225 tttaagctgtttttagtggaaaacccctagttttcttctcttaa 29292268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 439
Target Start/End: Original strand, 10600469 - 10600519
Alignment:
Q  390 tgatcatgcttgtaataat-aaaaaccagcccttattgtttaccaaaaaca 439  Q
    ||||||||||||||||||  |||||||||| ||| ||||||||||||||||    
T  10600469 tgatcatgcttgtaataaccaaaaaccagcacttcttgtttaccaaaaaca 10600519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 441
Target Start/End: Original strand, 18672428 - 18672490
Alignment:
Q  379 aatttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||||  ||||||  ||||||||||||  ||||||| ||||||||||||| ||||||||||    
T  18672428 aatttctgctttgatgctgcttgtaataactaaaaccaacccttattgtttatcaaaaacacc 18672490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 22450340 - 22450393
Alignment:
Q  387 gtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||||| ||||||||||||| ||||| || |||| ||||||||||||||||||    
T  22450340 gtttgatcttgcttgtaataatcaaaactagtcctt-ttgtttaccaaaaacacc 22450393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 13110036 - 13109975
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||| |||||||  | ||||||||||  |||| |||||||||||||||| ||||||||||    
T  13110036 atttctggtttgatgctacttgtaataaccaaaatcagcccttattgtttatcaaaaacacc 13109975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 16142388 - 16142327
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||    
T  16142388 atttctagtttgatcatgtttgtaataaccaaaaccagcccttattgtttaccaaaaacacc 16142327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 441
Target Start/End: Original strand, 14767108 - 14767170
Alignment:
Q  379 aatttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    ||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  14767108 aatttctggtttgatcgtgcttgtaataatcaaaactagcccttattgtttaccaaaaacacc 14767170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 18713553 - 18713496
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaa 437  Q
    |||||| |||||||| ||||||||||||| ||||||||||||| ||||||||||||||    
T  18713553 atttctggtttgatcttgcttgtaataatcaaaaccagcccttcttgtttaccaaaaa 18713496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 440
Target Start/End: Original strand, 17948199 - 17948241
Alignment:
Q  398 cttgtaataataaaaaccagcccttattgtttaccaaaaacac 440  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  17948199 cttgtaataatcaaaaccagcccgtattgtttaccaaaaacac 17948241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 17352615 - 17352559
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaa 437  Q
    |||||||||||||||||| |||||||||| ||||| || || ||||||||||||||||    
T  17352615 atttctagtttgatcatgtttgtaataattaaaactagtcc-tattgtttaccaaaaa 17352559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 17296477 - 17296538
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||| |||||||| || |||||||||  ||||| || |||| ||||||||||||||||||    
T  17296477 atttcttgtttgatcctgattgtaataaccaaaactagaccttcttgtttaccaaaaacacc 17296538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 17524712 - 17524651
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    ||||| |||| |||| ||||||||||||  ||||||||||||  | ||||||||||||||||    
T  17524712 atttcaagttagatcctgcttgtaataaccaaaaccagccctcgtggtttaccaaaaacacc 17524651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 408
Target Start/End: Original strand, 1469523 - 1469551
Alignment:
Q  380 atttctagtttgatcatgcttgtaataat 408  Q
    |||||||||||||||||||||||||||||    
T  1469523 atttctagtttgatcatgcttgtaataat 1469551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 4390 - 4329
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||| |||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  4390 atttctggtttgatcctgcttgtaataatcaaaaccatcccttattgtttaccaaaaacacc 4329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 17065 - 17006
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacac 440  Q
    ||||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||||||    
T  17065 atttctagtttgatcctgcttgtaataatcaaa-ccatcccttattgtttaccaaaaacac 17006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 15127 - 15073
Alignment:
Q  387 gtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||    
T  15127 gtttgatcatgcttgtaataatcaaaaccatcccttattgtttacccaaaacacc 15073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 376468 - 376529
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccag-cccttattgtttaccaaaaacac 440  Q
    |||||| |||||||| | ||||||||||| |||||||| |||||||||||||||||||||||    
T  376468 atttctggtttgatcctccttgtaataatcaaaaccagccccttattgtttaccaaaaacac 376529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 441
Target Start/End: Original strand, 51888 - 51950
Alignment:
Q  379 aatttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||||  ||||||| ||||||||||||  ||||||| ||||| ||||||||||||||||||    
T  51888 aatttctgatttgatcctgcttgtaataactaaaaccatcccttcttgtttaccaaaaacacc 51950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 20383 - 20322
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    |||||| |||||||| ||||||||||||  ||||||| ||||| ||||||||| ||||||||    
T  20383 atttctggtttgatcctgcttgtaataaccaaaaccatcccttcttgtttacccaaaacacc 20322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 191995 - 192056
Alignment:
Q  380 atttctagtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaacacc 441  Q
    ||||||||||||||||||||| ||||||  ||||| ||||||| |||||  | |||||||||    
T  191995 atttctagtttgatcatgcttataataaccaaaactagcccttcttgttcgcgaaaaacacc 192056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 12965 - 12913
Alignment:
Q  387 gtttgatcatgcttgtaataataaaaaccagcccttattgtttaccaaaaaca 439  Q
    |||||||| |||| |||||||| ||||| ||||| || |||||||||||||||    
T  12965 gtttgatcctgctcgtaataatcaaaactagcccgtaatgtttaccaaaaaca 12913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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