View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18993_low_80 (Length: 297)

Name: NF18993_low_80
Description: NF18993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18993_low_80
NF18993_low_80
[»] scaffold0083 (2 HSPs)
scaffold0083 (180-287)||(54065-54172)
scaffold0083 (18-106)||(53908-53996)
[»] chr3 (22 HSPs)
chr3 (180-287)||(9980965-9981072)
chr3 (180-276)||(10360185-10360281)
chr3 (78-175)||(10264591-10264688)
chr3 (18-106)||(10360028-10360116)
chr3 (18-106)||(9981141-9981229)
chr3 (229-276)||(10264483-10264530)
chr3 (96-159)||(10430097-10430160)
chr3 (80-137)||(11772695-11772752)
chr3 (252-287)||(10584471-10584506)
chr3 (79-113)||(10134711-10134745)
chr3 (239-287)||(10035589-10035637)
chr3 (88-127)||(10093176-10093215)
chr3 (18-61)||(10130686-10130729)
chr3 (88-127)||(10200058-10200097)
chr3 (18-61)||(10372286-10372329)
chr3 (18-64)||(10264700-10264746)
chr3 (78-135)||(10130614-10130671)
chr3 (80-113)||(10130846-10130879)
chr3 (80-113)||(10372136-10372169)
chr3 (78-135)||(10372344-10372401)
chr3 (77-106)||(10584614-10584643)
chr3 (239-287)||(10130514-10130562)


Alignment Details
Target: scaffold0083 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 180 - 287
Target Start/End: Original strand, 54065 - 54172
Alignment:
Q  180 gcaatcaatggaagccgctgagtcttcaatttgtcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatagcta 279  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54065 gcaatcaatggatgccgctgagtcttcaattcctcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatagcta 54164  T
Q  280 ggcctttg 287  Q
    ||||||||    
T  54165 ggcctttg 54172  T

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Target: scaffold0083; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 53908 - 53996
Alignment:
Q  18 tttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgcnnnnnnnnnntgttacaaattaagaatattacaaacccta 106  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||          ||||||||||||||||||||||||||||||    
T  53908 tttatcatatgagcattcatttaaaattacaaattaagaatcacgttgcaaacaaaaaatgttacaaattaagaatattacaaacccta 53996  T

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Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 180 - 287
Target Start/End: Complemental strand, 9981072 - 9980965
Alignment:
Q  180 gcaatcaatggaagccgctgagtcttcaatttgtcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatagcta 279  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9981072 gcaatcaatggatgccgctgagtcttcaattcctcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatagcta 9980973  T
Q  280 ggcctttg 287  Q
    ||||||||    
T  9980972 ggcctttg 9980965  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 10360185 - 10360281
Alignment:
Q  180 gcaatcaatggaagccgctgagtcttcaatttgtcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatag 276  Q
    ||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10360185 gcaatcaatggaagctgctgagtcttcaattcctcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatag 10360281  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 10264688 - 10264591
Alignment:
Q  78 gttacaaattaagaatattacaaaccctactgcattgtactttgtctgaccggatcatgcgggatattaggaaacattcaaatgataataaaatacaa 175  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||||    
T  10264688 gttacaaattaagaatattacaaatcctactacattgtactttgtctgatcggatcatgcaggttattacgaaacattcaaatgataataaaatacaa 10264591  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 10360028 - 10360116
Alignment:
Q  18 tttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgcnnnnnnnnnntgttacaaattaagaatattacaaacccta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||          ||||||||||||||||||||||||||||||    
T  10360028 tttatcatacgagcattcatttaaaattacaaattaagaatcacgttgcaaacaaaaaatgttacaaattaagaatattacaaacccta 10360116  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 9981229 - 9981141
Alignment:
Q  18 tttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgcnnnnnnnnnntgttacaaattaagaatattacaaacccta 106  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||          ||||||||||||||||||||||||||||||    
T  9981229 tttatcatatgagcattcatttaaaattacaaattaagaatcacgttgcaaacaaaaaatgttacaaattaagaatattacaaacccta 9981141  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 10264530 - 10264483
Alignment:
Q  229 aagcagttttcttcaattcatcaagtgagcagattatcatccacatag 276  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  10264530 aagcatttttcttcaattcatcaagtgagctgattatcatccacatag 10264483  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 10430097 - 10430160
Alignment:
Q  96 tacaaaccctactgcattgtactttgtctgaccggatcatgcgggatattaggaaacattcaaa 159  Q
    ||||||||||||||||||||| | |||||||||||||||||| || ||||| ||||||| ||||    
T  10430097 tacaaaccctactgcattgtaatctgtctgaccggatcatgcaggttattatgaaacatacaaa 10430160  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 11772752 - 11772695
Alignment:
Q  80 tacaaattaagaatattacaaaccctactgcattgtactttgtctgaccggatcatgc 137  Q
    |||||||||||||||||||||| |||| |||||| |||||||||| || |||||||||    
T  11772752 tacaaattaagaatattacaaatcctaatgcattctactttgtctaacgggatcatgc 11772695  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 287
Target Start/End: Complemental strand, 10584506 - 10584471
Alignment:
Q  252 agtgagcagattatcatccacatagctaggcctttg 287  Q
    ||||||||||||||||||||||||||||||||||||    
T  10584506 agtgagcagattatcatccacatagctaggcctttg 10584471  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 10134745 - 10134711
Alignment:
Q  79 ttacaaattaagaatattacaaaccctactgcatt 113  Q
    |||||||||||||||||||||||||||||||||||    
T  10134745 ttacaaattaagaatattacaaaccctactgcatt 10134711  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 10035637 - 10035589
Alignment:
Q  239 cttcaattcatcaagtgagcagattatcatccacatagctaggcctttg 287  Q
    ||||||||||  || ||||| ||||||||||||||||||||||||||||    
T  10035637 cttcaattcacgaaatgagctgattatcatccacatagctaggcctttg 10035589  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 10093215 - 10093176
Alignment:
Q  88 aagaatattacaaaccctactgcattgtactttgtctgac 127  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  10093215 aagaatattacaaaccctactgcattgtactctgtatgac 10093176  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 10130729 - 10130686
Alignment:
Q  18 tttatcatacgagcattcatttaaaattacaaattaagaatcac 61  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||    
T  10130729 tttatcatatgagcattcacttaaagttacaaattaagaatcac 10130686  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 10200097 - 10200058
Alignment:
Q  88 aagaatattacaaaccctactgcattgtactttgtctgac 127  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  10200097 aagaatattacaaaccctactgcattgtactctgtatgac 10200058  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 10372286 - 10372329
Alignment:
Q  18 tttatcatacgagcattcatttaaaattacaaattaagaatcac 61  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||    
T  10372286 tttatcatatgagcattcacttaaagttacaaattaagaatcac 10372329  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 10264746 - 10264700
Alignment:
Q  18 tttatcatacgagcattcatttaaaattacaaattaagaatcacgtc 64  Q
    ||||||||| ||||||||  ||||| |||||||||||||||||||||    
T  10264746 tttatcatatgagcattcgcttaaagttacaaattaagaatcacgtc 10264700  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 10130671 - 10130614
Alignment:
Q  78 gttacaaattaagaatattacaaaccctactgcattgtactttgtctgaccggatcat 135  Q
    |||||||||||  |||||| ||||||||||  ||||||| ||||||||||| ||||||    
T  10130671 gttacaaattataaatattgcaaaccctacaacattgtattttgtctgaccagatcat 10130614  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 10130879 - 10130846
Alignment:
Q  80 tacaaattaagaatattacaaaccctactgcatt 113  Q
    |||||||||||||||||||||||||||| |||||    
T  10130879 tacaaattaagaatattacaaaccctaccgcatt 10130846  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 10372136 - 10372169
Alignment:
Q  80 tacaaattaagaatattacaaaccctactgcatt 113  Q
    |||||||||||||||||||||||||||| |||||    
T  10372136 tacaaattaagaatattacaaaccctaccgcatt 10372169  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 10372344 - 10372401
Alignment:
Q  78 gttacaaattaagaatattacaaaccctactgcattgtactttgtctgaccggatcat 135  Q
    |||||||||||  |||||| ||||||||||  ||||||| ||||||||||| ||||||    
T  10372344 gttacaaattataaatattgcaaaccctacaacattgtattttgtctgaccagatcat 10372401  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 106
Target Start/End: Complemental strand, 10584643 - 10584614
Alignment:
Q  77 tgttacaaattaagaatattacaaacccta 106  Q
    ||||||||||||||||||||||||||||||    
T  10584643 tgttacaaattaagaatattacaaacccta 10584614  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 10130562 - 10130514
Alignment:
Q  239 cttcaattcatcaagtgagcagattatcatccacatagctaggcctttg 287  Q
    |||||||||| ||| |||||  |||||||||||||||||| ||||||||    
T  10130562 cttcaattcaccaaatgagctaattatcatccacatagctgggcctttg 10130514  T

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